MGE detailed information
MGE type: Prophage MGE length: 66120 bp
Accession: NZ_CP024473 Location: 2212586..2278705 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Accession: NZ_CP024473 Location: 2212586..2278705 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ98_RS10800 (2211878) | 2211878..2212681 | + | 804 | WP_000997035.1 | 2,5-didehydrogluconate reductase DkgB | - |
| CPZ98_RS10805 (2212720) | 2212720..2212965 | - | 246 | Protein_2080 | IS4 family transposase | - |
| CPZ98_RS10810 (2213424) | 2213424..2213425 | - | 2 | WP_232046046.1 | IS1 family transposase | - |
| CPZ98_RS10815 (2213733) | 2213733..2214842 | - | 1110 | Protein_2082 | IS4-like element IS4 family transposase | - |
| CPZ98_RS10820 (2214892) | 2214892..2215806 | - | 915 | WP_000648578.1 | DNA-binding transcriptional regulator YafC | - |
| CPZ98_RS10825 (2216047) | 2216047..2216847 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| CPZ98_RS10830 (2216925) | 2216925..2217695 | + | 771 | WP_000211683.1 | class I SAM-dependent methyltransferase | - |
| CPZ98_RS10835 (2217743) | 2217743..2219101 | - | 1359 | WP_000644678.1 | murein transglycosylase D | - |
| CPZ98_RS10840 (2219173) | 2219173..2219928 | - | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| CPZ98_RS10845 (2219962) | 2219962..2220684 | + | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| CPZ98_RS10850 (2220681) | 2220681..2221148 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| CPZ98_RS10855 (2221213) | 2221213..2221944 | + | 732 | WP_005060334.1 | DNA polymerase III subunit epsilon | - |
| CPZ98_RS10865 (2222284) | 2222284..2223330 | - | 1047 | WP_000402248.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| CPZ98_RS10870 (2223341) | 2223341..2224326 | - | 986 | Protein_2092 | type VI secretion system baseplate subunit TssG | - |
| CPZ98_RS10875 (2224323) | 2224323..2226206 | - | 1884 | WP_000371479.1 | type VI secretion system baseplate subunit TssF | - |
| CPZ98_RS10880 (2226222) | 2226222..2226716 | - | 495 | WP_001276640.1 | type VI secretion system baseplate subunit TssE | - |
| CPZ98_RS10885 (2226713) | 2226713..2227543 | - | 831 | Protein_2095 | type VI secretion system accessory protein TagJ | - |
| CPZ98_RS26355 (2227530) | 2227530..2228093 | - | 564 | WP_232046051.1 | type VI secretion system-associated protein TagK | - |
| CPZ98_RS26360 (2228145) | 2228145..2228444 | - | 300 | WP_000804009.1 | FHA domain-containing protein | - |
| CPZ98_RS10895 (2228542) | 2228542..2229770 | + | 1229 | WP_094081542.1 | IS3-like element IS2 family transposase | - |
| CPZ98_RS10900 (2229827) | 2229827..2230114 | - | 288 | WP_000343120.1 | hypothetical protein | - |
| CPZ98_RS10910 (2231388) | 2231388..2231546 | - | 159 | Protein_2101 | helix-turn-helix domain-containing protein | - |
| CPZ98_RS10915 (2231546) | 2231546..2231851 | - | 306 | WP_000206732.1 | protein YfdT | - |
| CPZ98_RS10920 (2231851) | 2231851..2232210 | - | 360 | WP_000563002.1 | hypothetical protein | - |
| CPZ98_RS10925 (2232194) | 2232194..2233403 | - | 1210 | Protein_2104 | IS3 family transposase | - |
| CPZ98_RS10930 (2233566) | 2233566..2234722 | + | 1157 | WP_094081509.1 | IS3-like element IS600 family transposase | - |
| CPZ98_RS10935 (2234768) | 2234768..2235124 | + | 357 | Protein_2106 | integrase | - |
| CPZ98_RS10940 (2235386) | 2235386..2235748 | + | 363 | WP_000915849.1 | GtrA family protein | - |
| CPZ98_RS10945 (2235745) | 2235745..2236665 | + | 921 | WP_000703663.1 | glycosyltransferase family 2 protein | - |
| CPZ98_RS26365 (2236668) | 2236668..2238188 | + | 1521 | WP_228355687.1 | glycosyltransferase family 39 protein | - |
| CPZ98_RS10965 (2238422) | 2238422..2238862 | - | 441 | WP_001223320.1 | tail assembly chaperone | - |
| CPZ98_RS10970 (2238834) | 2238834..2239346 | - | 513 | Protein_2111 | hypothetical protein | - |
| CPZ98_RS10975 (2239411) | 2239411..2240567 | + | 1157 | WP_094099483.1 | IS3-like element IS600 family transposase | - |
| CPZ98_RS10980 (2240611) | 2240611..2241579 | + | 969 | Protein_2113 | site-specific integrase | - |
| CPZ98_RS10990 (2241784) | 2241784..2243037 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| CPZ98_RS10995 (2243049) | 2243049..2244152 | - | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| CPZ98_RS11005 (2245216) | 2245216..2246271 | + | 1056 | WP_128832292.1 | phosphoporin PhoE | - |
| CPZ98_RS11010 (2246310) | 2246310..2246711 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| - (2247429) | 2247429..2247509 | - | 81 | NuclAT_8 | - | - |
| - (2247429) | 2247429..2247509 | - | 81 | NuclAT_8 | - | - |
| - (2247429) | 2247429..2247509 | - | 81 | NuclAT_8 | - | - |
| - (2247429) | 2247429..2247509 | - | 81 | NuclAT_8 | - | - |
| CPZ98_RS11015 (2246769) | 2246769..2248013 | - | 1245 | WP_000189557.1 | esterase FrsA | - |
| CPZ98_RS11020 (2248105) | 2248105..2248563 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| CPZ98_RS11025 (2248825) | 2248825..2250282 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| CPZ98_RS11030 (2250339) | 2250339..2250899 | - | 561 | Protein_2122 | peptide chain release factor H | - |
| CPZ98_RS11035 (2251015) | 2251015..2252058 | - | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| CPZ98_RS11040 (2252304) | 2252304..2252756 | - | 453 | WP_001059846.1 | GNAT family N-acetyltransferase | - |
| CPZ98_RS11045 (2252766) | 2252766..2253164 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| CPZ98_RS11050 (2253167) | 2253167..2253460 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| CPZ98_RS11055 (2253512) | 2253512..2254567 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| CPZ98_RS11060 (2254638) | 2254638..2255423 | - | 786 | WP_000207560.1 | putative lateral flagellar export/assembly protein LafU | - |
| CPZ98_RS11065 (2255395) | 2255395..2257107 | + | 1713 | Protein_2129 | flagellar biosynthesis protein FlhA | - |
| CPZ98_RS11070 (2257161) | 2257161..2257682 | - | 522 | Protein_2130 | C40 family peptidase | - |
| CPZ98_RS11075 (2258066) | 2258066..2258806 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| CPZ98_RS11080 (2258777) | 2258777..2259544 | - | 768 | WP_005060449.1 | class II glutamine amidotransferase | - |
| CPZ98_RS11085 (2259750) | 2259750..2260328 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| CPZ98_RS11090 (2260568) | 2260568..2263012 | + | 2445 | Protein_2134 | acyl-CoA dehydrogenase FadE | - |
| CPZ98_RS11095 (2263055) | 2263055..2263501 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| CPZ98_RS11100 (2263682) | 2263682..2264452 | + | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| CPZ98_RS11105 (2264562) | 2264562..2264782 | + | 221 | Protein_2137 | SymE family type I addiction module toxin | - |
| CPZ98_RS11110 (2264816) | 2264816..2265513 | + | 698 | WP_232046045.1 | IS1 family transposase | - |
| CPZ98_RS11115 (2265795) | 2265795..2266721 | + | 927 | WP_045177322.1 | taurine ABC transporter substrate-binding protein | - |
| CPZ98_RS11120 (2266734) | 2266734..2267501 | + | 768 | WP_000939367.1 | taurine ABC transporter ATP-binding subunit | - |
| CPZ98_RS11125 (2267498) | 2267498..2268325 | + | 828 | WP_000114607.1 | taurine ABC transporter permease TauC | - |
| CPZ98_RS11130 (2268322) | 2268322..2269173 | + | 852 | WP_000004031.1 | taurine dioxygenase | - |
| CPZ98_RS11135 (2269279) | 2269279..2270253 | - | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| CPZ98_RS11140 (2270778) | 2270778..2271146 | + | 369 | Protein_2144 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CPZ98_RS11150 (2272015) | 2272015..2273243 | + | 1229 | WP_094081542.1 | IS3-like element IS2 family transposase | - |
| CPZ98_RS11155 (2273251) | 2273251..2273784 | + | 534 | Protein_2147 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CPZ98_RS11160 (2273848) | 2273848..2273955 | + | 108 | Protein_2148 | IS3 family transposase | - |
| CPZ98_RS11165 (2274020) | 2274020..2275176 | + | 1157 | WP_094081493.1 | IS3-like element IS600 family transposase | - |
| CPZ98_RS11170 (2275217) | 2275217..2276262 | + | 1046 | Protein_2150 | IS3 family transposase | - |
| CPZ98_RS11175 (2276282) | 2276282..2276809 | + | 528 | Protein_2151 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CPZ98_RS11180 (2276897) | 2276897..2277400 | + | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| CPZ98_RS11185 (2277401) | 2277401..2278558 | - | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| CPZ98_RS11190 (2278910) | 2278910..2280130 | + | 1221 | WP_005062822.1 | peptide antibiotic transporter SbmA | - |
| CPZ98_RS11195 (2280143) | 2280143..2281237 | + | 1095 | WP_000092055.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| CPZ98_RS11200 (2281296) | 2281296..2281604 | - | 309 | WP_000763148.1 | YaiY family protein | - |
| CPZ98_RS11205 (2281864) | 2281864..2282076 | + | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| CPZ98_RS11210 (2282100) | 2282100..2283194 | - | 1095 | WP_000413677.1 | D-alanine--D-alanine ligase | - |
| CPZ98_RS25940 (2283272) | 2283272..2283475 | + | 204 | WP_023517632.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|