MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 167927 bp
Accession: NZ_CP024425 Location: 1..167927 Organism: Paracoccus yeei strain TT13 Replicon: plasmid pTT13-3
Accession: NZ_CP024425 Location: 1..167927 Organism: Paracoccus yeei strain TT13 Replicon: plasmid pTT13-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYTT13_RS20400 () | 101..1312 | + | 1212 | WP_099650549.1 | Iron-sulfur cluster carrier protein | VF |
| PYTT13_RS20405 () | 1309..2316 | + | 1008 | WP_099650550.1 | plasmid partitioning protein RepB | - |
| PYTT13_RS20410 () | 2504..3715 | + | 1212 | WP_099650661.1 | replication initiation protein | - |
| PYTT13_RS20415 () | 4109..4299 | - | 191 | Protein_3 | aldo/keto reductase | - |
| PYTT13_RS20420 () | 4423..4572 | + | 150 | Protein_4 | IS5/IS1182 family transposase | - |
| PYTT13_RS23315 () | 5163..5375 | + | 213 | WP_191569392.1 | hypothetical protein | - |
| PYTT13_RS20430 () | 5368..5505 | + | 138 | Protein_6 | IS3 family transposase | - |
| PYTT13_RS20435 () | 5827..6537 | + | 711 | WP_099650552.1 | hypothetical protein | - |
| PYTT13_RS20440 () | 6561..8867 | + | 2307 | WP_099650553.1 | UDP-forming cellulose synthase catalytic subunit | - |
| PYTT13_RS20445 () | 8870..11080 | + | 2211 | WP_157767435.1 | cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB | - |
| PYTT13_RS20450 () | 11080..12165 | + | 1086 | WP_099650555.1 | glycosyl hydrolase family 5 | - |
| PYTT13_RS20455 () | 12162..13565 | + | 1404 | WP_099650556.1 | hypothetical protein | - |
| PYTT13_RS20460 () | 13657..16737 | + | 3081 | WP_191569390.1 | Sensor histidine kinase RcsC | VF |
| PYTT13_RS20465 () | 16721..17581 | + | 861 | WP_150349443.1 | protein-glutamate O-methyltransferase CheR | - |
| PYTT13_RS20470 () | 17578..18915 | + | 1338 | WP_191569391.1 | Sensor histidine kinase RcsC | VF |
| PYTT13_RS20475 () | 18990..20342 | + | 1353 | WP_099650560.1 | hypothetical protein | VF |
| PYTT13_RS20485 () | 20772..20924 | - | 153 | Protein_16 | IS256 family transposase ISOan9 | Transposase |
| PYTT13_RS20490 () | 20912..21997 | - | 1086 | WP_157767437.1 | Vitamin B12 transporter BtuB | VF |
| PYTT13_RS20495 () | 22576..24225 | - | 1650 | WP_099650562.1 | Na/Pi cotransporter family protein | - |
| PYTT13_RS20500 () | 24441..25778 | - | 1338 | WP_099650563.1 | cation:proton antiporter | - |
| PYTT13_RS20510 () | 26344..27081 | - | 738 | WP_099650564.1 | ABC transporter permease | - |
| PYTT13_RS20515 () | 27078..28067 | - | 990 | WP_099650565.1 | Glycine betaine uptake system ATP-binding protein YehX | VF |
| PYTT13_RS20520 () | 28064..29284 | - | 1221 | WP_099650662.1 | ABC transporter permease | - |
| PYTT13_RS20525 () | 29367..30269 | - | 903 | WP_099650566.1 | ABC transporter substrate-binding protein | - |
| PYTT13_RS20530 () | 30976..32385 | - | 1410 | WP_099648851.1 | IS4 family transposase ISLpn5 | Transposase |
| PYTT13_RS20535 () | 32614..32783 | - | 170 | Protein_25 | transposase | - |
| PYTT13_RS20540 () | 32859..33157 | + | 299 | Protein_26 | transposase | - |
| PYTT13_RS20545 () | 33288..34514 | + | 1227 | WP_099647977.1 | IS256 family transposase ISPko2 | Transposase |
| PYTT13_RS20550 () | 34527..34715 | - | 189 | WP_157767463.1 | IS3 family transposase ISMex7 | Transposase |
| PYTT13_RS20555 () | 34867..35163 | - | 297 | WP_099650568.1 | hypothetical protein | - |
| PYTT13_RS20560 () | 35241..35819 | + | 579 | WP_099650569.1 | hypothetical protein | - |
| PYTT13_RS22990 () | 35835..36002 | + | 168 | WP_157767439.1 | hypothetical protein | - |
| PYTT13_RS20565 () | 36227..38866 | - | 2640 | WP_099650570.1 | AAA family ATPase | - |
| PYTT13_RS20570 () | 38863..39975 | - | 1113 | WP_099650571.1 | metallophosphoesterase | - |
| PYTT13_RS20575 () | 40179..40577 | - | 399 | WP_099650572.1 | PIN domain-containing protein | Toxin Detail |
| PYTT13_RS20580 () | 40567..40794 | - | 228 | WP_099650573.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| PYTT13_RS20585 () | 40940..41883 | + | 944 | Protein_36 | IS110 family transposase ISPko7 | Transposase |
| PYTT13_RS20590 () | 41882..42094 | + | 213 | Protein_37 | IS3 family transposase | - |
| PYTT13_RS20600 () | 42167..42814 | - | 648 | WP_099650663.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| PYTT13_RS20605 () | 42857..43120 | - | 264 | WP_028720295.1 | hypothetical protein | - |
| PYTT13_RS20610 () | 43285..44290 | + | 1006 | Protein_40 | IS3 family transposase IS1133 | Transposase |
| PYTT13_RS20615 () | 44578..45582 | - | 1005 | WP_099650574.1 | IS110 family transposase ISMex29 | Transposase |
| PYTT13_RS20620 () | 45687..45851 | + | 165 | Protein_42 | IS3 family transposase IS1133 | Transposase |
| PYTT13_RS20625 () | 45985..46725 | - | 741 | WP_099650575.1 | sulfite exporter TauE/SafE family protein | - |
| PYTT13_RS20630 () | 46823..47704 | + | 882 | WP_099650576.1 | hypothetical protein | VF |
| PYTT13_RS20635 () | 47640..48608 | - | 969 | WP_099650664.1 | alpha/beta fold hydrolase | - |
| PYTT13_RS20640 () | 48669..49268 | + | 600 | WP_099650577.1 | HTH-type transcriptional regulator BetI | VF |
| PYTT13_RS20645 () | 49408..51399 | + | 1992 | WP_099650578.1 | PhoX family phosphatase | - |
| PYTT13_RS20650 () | 51516..52705 | + | 1190 | WP_099648611.1 | IS3 family transposase ISOba1 | Transposase |
| PYTT13_RS20655 () | 52930..53778 | - | 849 | WP_157767441.1 | LysR family transcriptional regulator | - |
| PYTT13_RS20660 () | 53765..54487 | + | 723 | Protein_50 | IS256 family transposase ISPko2 | Transposase |
| PYTT13_RS23000 () | 54757..54906 | + | 150 | WP_157767445.1 | hypothetical protein | - |
| PYTT13_RS20665 () | 54934..55416 | - | 483 | WP_099650579.1 | helix-turn-helix domain-containing protein | - |
| PYTT13_RS20670 () | 55650..56396 | + | 747 | WP_099650580.1 | hypothetical protein | - |
| PYTT13_RS20675 () | 56400..56903 | + | 504 | WP_099650581.1 | alginate export family protein | - |
| PYTT13_RS20685 () | 57363..58589 | - | 1227 | WP_099647977.1 | IS256 family transposase ISPko2 | Transposase |
| PYTT13_RS20690 () | 58505..59692 | + | 1188 | WP_099650666.1 | MFS transporter | - |
| PYTT13_RS20695 () | 59854..60630 | - | 777 | Protein_57 | IS256 family transposase ISPko2 | Transposase |
| PYTT13_RS23005 () | 60650..60832 | + | 183 | WP_157767447.1 | IS256 family transposase ISPko2 | Transposase |
| PYTT13_RS20700 () | 61140..61631 | + | 492 | WP_090757591.1 | phosphate-starvation-inducible PsiE family protein | - |
| PYTT13_RS20705 () | 61854..63263 | + | 1410 | WP_099648851.1 | IS4 family transposase ISLpn5 | Transposase |
| PYTT13_RS20710 () | 63361..63540 | + | 180 | WP_099650582.1 | IS66 family transposase ISPpa5 | Transposase |
| PYTT13_RS20715 () | 63780..65189 | + | 1410 | WP_099648851.1 | IS4 family transposase ISLpn5 | Transposase |
| PYTT13_RS20720 () | 65383..65514 | - | 132 | Protein_63 | IS256 family transposase | - |
| PYTT13_RS20725 () | 65823..66065 | - | 243 | WP_028718929.1 | ISNCY family transposase ISH7A | Transposase |
| PYTT13_RS20730 () | 66154..66459 | + | 306 | WP_099650583.1 | hypothetical protein | - |
| PYTT13_RS20735 () | 66506..66982 | + | 477 | WP_099650584.1 | hypothetical protein | - |
| PYTT13_RS20740 () | 67053..68432 | + | 1380 | WP_099650585.1 | hypothetical protein | - |
| PYTT13_RS20745 () | 68782..69762 | - | 981 | WP_099650586.1 | Biotin synthase | VF |
| PYTT13_RS20750 () | 69759..70256 | - | 498 | WP_198406729.1 | biotin transporter BioY | - |
| PYTT13_RS20755 () | 70409..71047 | - | 639 | WP_036762303.1 | GntR family transcriptional regulator | - |
| PYTT13_RS20760 () | 71910..72287 | - | 378 | WP_099650588.1 | hypothetical protein | - |
| PYTT13_RS20765 () | 72355..72579 | - | 225 | WP_099650589.1 | hypothetical protein | - |
| PYTT13_RS20770 () | 72596..73822 | - | 1227 | WP_099647977.1 | IS256 family transposase ISPko2 | Transposase |
| PYTT13_RS20775 () | 74058..74267 | - | 210 | WP_099650590.1 | cold-shock protein | - |
| PYTT13_RS20780 () | 74458..75611 | - | 1154 | Protein_75 | alpha/beta hydrolase | - |
| PYTT13_RS20785 () | 75511..75924 | - | 414 | WP_099650591.1 | DUF883 C-terminal domain-containing protein | - |
| PYTT13_RS20790 () | 76154..77344 | - | 1191 | WP_099650592.1 | MFS transporter | - |
| PYTT13_RS20795 () | 77344..78051 | - | 708 | WP_099650593.1 | arsenical resistance protein ArsH | - |
| PYTT13_RS20800 () | 78048..79124 | - | 1077 | WP_099650594.1 | ACR3 family arsenite efflux transporter | - |
| PYTT13_RS20805 () | 79139..79564 | - | 426 | WP_099650595.1 | arsenate reductase (glutaredoxin) | - |
| PYTT13_RS20810 () | 79568..79927 | - | 360 | WP_099650596.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| PYTT13_RS20815 () | 80174..83374 | - | 3201 | WP_099650597.1 | error-prone DNA polymerase | - |
| PYTT13_RS20820 () | 83371..84840 | - | 1470 | WP_099650598.1 | DNA polymerase Y family protein | - |
| PYTT13_RS20825 () | 84761..85516 | - | 756 | WP_099650599.1 | damage-inducible protein | - |
| PYTT13_RS20830 () | 85668..86315 | + | 648 | WP_099650667.1 | SOS response-associated peptidase | - |
| PYTT13_RS20835 () | 86315..86629 | + | 315 | WP_099650600.1 | hypothetical protein | - |
| PYTT13_RS23010 () | 86957..87097 | + | 141 | WP_157767449.1 | hypothetical protein | - |
| PYTT13_RS20840 () | 87100..87621 | + | 522 | WP_099650601.1 | hypothetical protein | - |
| PYTT13_RS20845 () | 87662..88333 | + | 672 | WP_099650602.1 | hypothetical protein | - |
| PYTT13_RS20850 () | 88375..89319 | + | 945 | WP_157767451.1 | hypothetical protein | - |
| PYTT13_RS20855 () | 89772..90545 | - | 774 | WP_099650604.1 | FadR family transcriptional regulator | - |
| PYTT13_RS20860 () | 91238..93892 | + | 2655 | WP_099650605.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
| PYTT13_RS20865 () | 93914..95197 | + | 1284 | WP_099650606.1 | dihydrolipoyllysine-residue acetyltransferase | - |
| PYTT13_RS20870 () | 95212..96981 | + | 1770 | WP_099650607.1 | dihydrolipoyl dehydrogenase | - |
| PYTT13_RS20875 () | 97092..98867 | + | 1776 | WP_028720075.1 | L-lactate permease | - |
| PYTT13_RS20880 () | 98878..99645 | + | 768 | WP_028720074.1 | (Fe-S)-binding protein | - |
| PYTT13_RS20885 () | 99648..101069 | + | 1422 | WP_099650608.1 | lactate utilization protein | - |
| PYTT13_RS20890 () | 101066..101707 | + | 642 | WP_099650609.1 | LUD domain-containing protein | - |
| PYTT13_RS20895 () | 101741..102181 | + | 441 | WP_099650610.1 | hypothetical protein | - |
| PYTT13_RS20900 () | 102580..103434 | + | 855 | WP_099650611.1 | DMT family transporter | - |
| PYTT13_RS20905 () | 103747..104073 | + | 327 | Protein_101 | transposase | - |
| PYTT13_RS20910 () | 104042..104917 | - | 876 | WP_099650668.1 | GntR family transcriptional regulator | - |
| PYTT13_RS20915 () | 104841..105503 | + | 663 | WP_099650612.1 | flavin reductase family protein | - |
| PYTT13_RS20920 () | 105565..106899 | + | 1335 | WP_099650613.1 | MFS transporter | - |
| PYTT13_RS20925 () | 107051..107368 | + | 318 | Protein_105 | IS110 family transposase ISMch6 | Transposase |
| PYTT13_RS20930 () | 107388..107693 | + | 306 | Protein_106 | transposase | - |
| PYTT13_RS20935 () | 107734..108204 | + | 471 | Protein_107 | IS3 family transposase ISPko4 | Transposase |
| PYTT13_RS20940 () | 108572..109534 | - | 963 | WP_099650614.1 | XdhC family protein | - |
| PYTT13_RS20945 () | 109554..110786 | - | 1233 | WP_099650615.1 | benzoate/H(+) symporter BenE family transporter | - |
| PYTT13_RS20950 () | 110842..111648 | - | 807 | WP_099650616.1 | enoyl-CoA hydratase/isomerase family protein | - |
| PYTT13_RS20955 () | 111684..113204 | - | 1521 | WP_099650617.1 | AMP-binding protein | - |
| PYTT13_RS20960 () | 113207..113710 | - | 504 | WP_099650618.1 | (2Fe-2S)-binding protein | - |
| PYTT13_RS20965 () | 113698..114537 | - | 840 | WP_099650619.1 | FAD binding domain-containing protein | - |
| PYTT13_RS20970 () | 114534..117518 | - | 2985 | WP_099650620.1 | molybdopterin-dependent oxidoreductase | - |
| PYTT13_RS20975 () | 117637..118476 | - | 840 | WP_191569504.1 | helix-turn-helix domain-containing protein | - |
| PYTT13_RS20980 () | 118717..119127 | + | 411 | WP_099650622.1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PYTT13_RS20985 () | 119264..120001 | + | 738 | WP_099650669.1 | helix-turn-helix transcriptional regulator | - |
| PYTT13_RS20990 () | 121159..122373 | + | 1215 | WP_099648848.1 | IS256 family transposase ISPa1328 | Transposase |
| PYTT13_RS20995 () | 123109..123447 | + | 339 | WP_099650623.1 | hypothetical protein | - |
| PYTT13_RS21000 () | 123453..123779 | - | 327 | WP_099650624.1 | hypothetical protein | - |
| PYTT13_RS21005 () | 124059..124547 | - | 489 | WP_099650625.1 | hypothetical protein | - |
| PYTT13_RS21010 () | 124537..124728 | + | 192 | WP_099650626.1 | hypothetical protein | - |
| PYTT13_RS21015 () | 124855..125181 | + | 327 | WP_157767453.1 | hypothetical protein | - |
| PYTT13_RS21025 () | 125415..125678 | - | 264 | WP_099650629.1 | hypothetical protein | - |
| PYTT13_RS21030 () | 125799..126023 | + | 225 | WP_089389169.1 | transcriptional regulator/antitoxin MazE | - |
| PYTT13_RS21035 () | 126020..126406 | + | 387 | WP_099650630.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| PYTT13_RS21040 () | 126627..126860 | - | 234 | WP_191569657.1 | hypothetical protein | - |
| PYTT13_RS21045 () | 127166..128542 | - | 1377 | WP_099650631.1 | hypothetical protein | VF |
| PYTT13_RS21050 () | 128539..131643 | - | 3105 | WP_099650632.1 | Multidrug resistance protein MdtC | VF |
| PYTT13_RS21055 () | 131647..132852 | - | 1206 | WP_099650633.1 | Multidrug resistance protein MdtA | VF |
| PYTT13_RS21060 () | 132986..133249 | - | 264 | WP_099650634.1 | hypothetical protein | - |
| PYTT13_RS21065 () | 133747..134961 | - | 1215 | WP_099648848.1 | IS256 family transposase ISPa1328 | Transposase |
| PYTT13_RS21070 () | 135001..135720 | + | 720 | Protein_133 | IS5 family transposase ISRosp6 | Transposase |
| PYTT13_RS21075 () | 135881..136288 | + | 408 | Protein_134 | IS5 family transposase ISRosp6 | Transposase |
| PYTT13_RS21080 () | 136624..137412 | - | 789 | Protein_135 | IS66 family transposase ISRhsp5 | Transposase |
| PYTT13_RS21085 () | 137373..137737 | - | 365 | Protein_136 | IS66 family transposase ISApr6 | Transposase |
| PYTT13_RS21090 () | 137868..138236 | - | 369 | WP_099650635.1 | transposase | - |
| PYTT13_RS21095 () | 138597..139850 | - | 1254 | WP_099650636.1 | Osmolarity sensor protein EnvZ | VF |
| PYTT13_RS21100 () | 139847..140572 | - | 726 | WP_051578277.1 | Transcriptional regulatory protein OmpR | VF |
| PYTT13_RS23015 () | 140772..141446 | + | 675 | WP_157767455.1 | hypothetical protein | - |
| PYTT13_RS23020 () | 141517..141972 | + | 456 | WP_157767457.1 | hypothetical protein | - |
| PYTT13_RS21115 () | 141991..142395 | + | 405 | WP_099650639.1 | hypothetical protein | - |
| PYTT13_RS21120 () | 142466..142747 | - | 282 | WP_143809872.1 | RcnB family protein | - |
| PYTT13_RS21125 () | 142769..144718 | - | 1950 | WP_099650640.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| PYTT13_RS21130 () | 144721..145944 | - | 1224 | WP_099650641.1 | efflux RND transporter periplasmic adaptor subunit | - |
| PYTT13_RS21135 () | 146162..146542 | - | 381 | WP_099650642.1 | FAD-binding oxidoreductase | - |
| PYTT13_RS23320 () | 146611..146739 | - | 129 | WP_099650643.1 | integrase core domain-containing protein | - |
| PYTT13_RS21145 () | 146783..148861 | - | 2079 | WP_157767459.1 | Fe(3+)-pyochelin receptor | VF |
| PYTT13_RS21150 () | 149083..150405 | - | 1323 | WP_157767461.1 | HAMP domain-containing histidine kinase | - |
| PYTT13_RS21155 () | 150447..151115 | - | 669 | WP_028719355.1 | Transcriptional regulatory protein QseB | VF |
| PYTT13_RS21160 () | 151118..151537 | - | 420 | WP_099650646.1 | hypothetical protein | - |
| PYTT13_RS21165 () | 151684..151884 | + | 201 | Protein_152 | IS256 family transposase ISAli7 | Transposase |
| PYTT13_RS21170 () | 151948..153492 | - | 1545 | WP_099650647.1 | ABC transporter substrate-binding protein | - |
| PYTT13_RS21175 () | 153532..154254 | - | 723 | WP_099650648.1 | urease accessory protein UreF | - |
| PYTT13_RS21180 () | 154251..154775 | - | 525 | WP_099650649.1 | urease accessory protein UreE | - |
| PYTT13_RS21185 () | 154786..155601 | - | 816 | WP_099650650.1 | urease accessory protein UreD | - |
| PYTT13_RS21190 () | 155598..156209 | - | 612 | WP_099650651.1 | Urease accessory protein UreG | VF |
| PYTT13_RS21195 () | 156223..157938 | - | 1716 | WP_099650652.1 | Urease subunit alpha | VF |
| PYTT13_RS21200 () | 157941..158624 | - | 684 | WP_099650670.1 | Urease subunit alpha | VF |
| PYTT13_RS21205 () | 158629..159336 | - | 708 | WP_099650653.1 | High-affinity branched-chain amino acid transport ATP-binding protein LivF | VF |
| PYTT13_RS21210 () | 159336..161129 | - | 1794 | WP_099650654.1 | Arginine transport ATP-binding protein ArtM | VF |
| PYTT13_RS21215 () | 161122..161958 | - | 837 | WP_099650655.1 | branched-chain amino acid ABC transporter permease | - |
| PYTT13_RS21220 () | 162012..163169 | - | 1158 | WP_099650656.1 | substrate-binding protein | - |
| PYTT13_RS21225 () | 163166..164068 | - | 903 | WP_099650657.1 | nitrilase family protein | - |
| PYTT13_RS21230 () | 164284..164862 | - | 579 | WP_099650671.1 | ANTAR domain-containing protein | - |
| PYTT13_RS21235 () | 164889..166031 | - | 1143 | WP_099650658.1 | transporter substrate-binding domain-containing protein | - |
| PYTT13_RS21240 () | 166710..167324 | - | 615 | WP_099650659.1 | SMC-Scp complex subunit ScpB | - |
| PYTT13_RS21245 () | 167326..167901 | - | 576 | WP_099650660.1 | DUF1403 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|