MGE detailed information
MGE type: Prophage MGE length: 79226 bp
Accession: NZ_CP024289 Location: 926505..1005730 Organism: Escherichia coli O178:H19 strain 2012C-4431 Replicon: chromosome
Accession: NZ_CP024289 Location: 926505..1005730 Organism: Escherichia coli O178:H19 strain 2012C-4431 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5960_RS04765 () | 923524..924495 | - | 972 | WP_000564742.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| A5960_RS04770 () | 924492..925235 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| A5960_RS04775 () | 925276..925671 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| A5960_RS04780 () | 925724..926500 | - | 777 | WP_170986505.1 | DUF72 domain-containing protein | - |
| A5960_RS04785 () | 926505..927791 | - | 1287 | WP_028985372.1 | site-specific integrase | - |
| A5960_RS04790 () | 927825..928079 | - | 255 | WP_001193437.1 | excisionase family protein | - |
| A5960_RS04795 () | 928098..928232 | - | 135 | WP_032295370.1 | hypothetical protein | - |
| A5960_RS04800 () | 928236..928482 | - | 247 | Protein_886 | DUF4222 domain-containing protein | - |
| A5960_RS04805 () | 928514..928885 | - | 372 | WP_001367902.1 | DUF5406 family protein | - |
| A5960_RS04810 () | 928926..929753 | - | 828 | WP_000720013.1 | hypothetical protein | - |
| A5960_RS04820 () | 930123..930695 | - | 573 | WP_028985373.1 | hypothetical protein | - |
| A5960_RS04825 () | 930701..930883 | - | 183 | WP_000553977.1 | hypothetical protein | - |
| A5960_RS04830 () | 931082..931282 | - | 201 | WP_000147364.1 | hypothetical protein | - |
| A5960_RS04835 () | 931279..931752 | - | 474 | WP_050457556.1 | helix-turn-helix domain-containing protein | - |
| A5960_RS04840 () | 932136..932840 | - | 705 | WP_028985374.1 | helix-turn-helix transcriptional regulator | - |
| A5960_RS04845 () | 932964..933209 | + | 246 | WP_028985375.1 | helix-turn-helix domain-containing protein | - |
| A5960_RS04850 () | 933280..933573 | - | 294 | WP_000867913.1 | hypothetical protein | - |
| A5960_RS04855 () | 933693..934400 | + | 708 | WP_096096184.1 | Rha family transcriptional regulator | - |
| A5960_RS04860 () | 934453..935277 | + | 825 | WP_000794367.1 | transporter | - |
| A5960_RS04865 () | 935274..936125 | + | 852 | WP_028985377.1 | Rha family phage regulatory protein | - |
| A5960_RS04870 () | 936122..936346 | + | 225 | WP_000618002.1 | hypothetical protein | - |
| A5960_RS04875 () | 936343..937254 | + | 912 | WP_096096181.1 | helix-turn-helix domain-containing protein | - |
| A5960_RS04880 () | 937274..938164 | + | 891 | WP_028985379.1 | ATP-binding protein | - |
| A5960_RS04885 () | 938161..939561 | + | 1401 | WP_028985380.1 | replicative DNA helicase | - |
| A5960_RS04890 () | 939558..939815 | + | 258 | WP_001065352.1 | hypothetical protein | - |
| A5960_RS04895 () | 939867..940856 | + | 990 | WP_050864163.1 | DUF968 domain-containing protein | - |
| A5960_RS04900 () | 940875..941309 | + | 435 | WP_024213837.1 | antitermination protein | - |
| A5960_RS04915 () | 941816..942763 | + | 948 | WP_000691354.1 | Shiga toxin Stx1 subunit A | - |
| A5960_RS04920 () | 942773..943042 | + | 270 | WP_000752026.1 | Shiga toxin Stx1a subunit B | - |
| A5960_RS04930 () | 943546..945483 | + | 1938 | WP_099528339.1 | SASA family carbohydrate esterase | - |
| A5960_RS04935 () | 945617..945796 | + | 180 | WP_000142786.1 | DUF1378 family protein | - |
| A5960_RS04940 () | 945837..946082 | + | 246 | WP_001290210.1 | DUF826 domain-containing protein | - |
| A5960_RS04945 () | 946160..946375 | + | 216 | WP_000284506.1 | class II holin family protein | - |
| A5960_RS04950 () | 946379..946963 | + | 585 | WP_096096232.1 | hypothetical protein | - |
| A5960_RS04955 () | 946943..947263 | - | 321 | WP_001063217.1 | hypothetical protein | - |
| A5960_RS04960 () | 947389..947922 | + | 534 | WP_096096231.1 | lysozyme | - |
| A5960_RS04965 () | 948197..948769 | + | 573 | WP_001056888.1 | hypothetical protein | - |
| A5960_RS28060 () | 948769..948918 | + | 150 | WP_032295774.1 | hypothetical protein | - |
| A5960_RS04970 () | 948921..949358 | + | 438 | WP_032295775.1 | lysis protein | - |
| A5960_RS04975 () | 949561..950103 | + | 543 | WP_028985600.1 | Rha family transcriptional regulator | - |
| A5960_RS04985 () | 950772..951317 | + | 546 | WP_000867498.1 | terminase small subunit | - |
| A5960_RS04990 () | 951292..953217 | + | 1926 | WP_099528340.1 | phage terminase large subunit family protein | - |
| A5960_RS04995 () | 953214..953420 | + | 207 | WP_000198155.1 | gpW family protein | - |
| A5960_RS05000 () | 953417..955018 | + | 1602 | WP_001365551.1 | phage portal protein | - |
| A5960_RS05005 () | 954999..956318 | + | 1320 | WP_001702225.1 | S49 family peptidase | - |
| A5960_RS05010 () | 956328..956660 | + | 333 | WP_001299443.1 | head decoration protein | - |
| A5960_RS05015 () | 956715..957740 | + | 1026 | WP_096096245.1 | major capsid protein | - |
| A5960_RS05020 () | 957782..958180 | + | 399 | WP_028985614.1 | DNA-packaging protein FI | - |
| A5960_RS05025 () | 958192..958545 | + | 354 | WP_028985615.1 | tail attachment protein | - |
| A5960_RS05030 () | 958561..959136 | + | 576 | WP_028985616.1 | phage tail protein | - |
| A5960_RS05035 () | 959133..959528 | + | 396 | WP_000683074.1 | phage minor tail U family protein | - |
| A5960_RS05040 () | 959536..960285 | + | 750 | WP_099528341.1 | phage tail protein | - |
| A5960_RS05045 () | 960301..960732 | + | 432 | WP_001299690.1 | phage minor tail protein G | - |
| A5960_RS05050 () | 960759..961172 | + | 414 | WP_071532372.1 | phage tail assembly protein T | - |
| A5960_RS05055 () | 961153..963732 | + | 2580 | WP_099528342.1 | phage tail tape measure protein | - |
| A5960_RS05060 () | 963729..964058 | + | 330 | WP_000847280.1 | phage tail protein | - |
| A5960_RS05065 () | 964058..964756 | + | 699 | WP_001365876.1 | phage minor tail protein L | - |
| A5960_RS05070 () | 964767..965510 | + | 744 | WP_099528343.1 | C40 family peptidase | - |
| A5960_RS05075 () | 965456..966088 | + | 633 | WP_072121435.1 | tail assembly protein | - |
| A5960_RS05080 () | 967004..970607 | + | 3604 | Protein_938 | DUF1983 domain-containing protein | - |
| A5960_RS05085 () | 970806..970946 | + | 141 | WP_000078853.1 | Hok/Gef family protein | - |
| A5960_RS05090 () | 971092..972804 | + | 1713 | WP_062893928.1 | prophage tail fiber N-terminal domain-containing protein | - |
| A5960_RS05095 () | 972814..973026 | + | 213 | WP_000438829.1 | hypothetical protein | - |
| A5960_RS05100 () | 973038..973712 | + | 675 | WP_001373129.1 | DUF4376 domain-containing protein | - |
| A5960_RS05105 () | 973982..974230 | - | 249 | WP_001217534.1 | DinI-like family protein | - |
| A5960_RS05110 () | 974548..975114 | - | 567 | WP_000891610.1 | hydrolase | - |
| A5960_RS05115 () | 975424..977196 | + | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| A5960_RS05120 () | 977314..977766 | + | 453 | WP_099528344.1 | dihydroneopterin triphosphate diphosphatase | - |
| A5960_RS05125 () | 977795..978535 | + | 741 | WP_000907248.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| A5960_RS05130 () | 978570..979091 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| A5960_RS05135 () | 979093..979695 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| A5960_RS05140 () | 979766..979831 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| A5960_RS05145 () | 979970..980581 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| A5960_RS05150 () | 980590..981600 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| A5960_RS05155 () | 981747..982532 | - | 786 | WP_000571479.1 | zinc ABC transporter permease subunit ZnuB | - |
| A5960_RS05160 () | 982529..983284 | - | 756 | WP_000202996.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| A5960_RS05165 () | 983363..984295 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| A5960_RS05170 () | 984311..985633 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| A5960_RS05175 () | 985753..986724 | + | 972 | WP_000448381.1 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | - |
| A5960_RS05180 () | 986856..988298 | - | 1443 | WP_000091176.1 | pyruvate kinase | - |
| A5960_RS05185 () | 988426..989295 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| A5960_RS05190 () | 989633..991108 | + | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| A5960_RS05195 () | 991343..993154 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| A5960_RS05200 () | 993191..993832 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| A5960_RS05205 () | 993888..995066 | - | 1179 | WP_000173493.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| A5960_RS05210 () | 995200..995490 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| A5960_RS05215 () | 995557..995913 | + | 357 | WP_001295500.1 | protein YebF | - |
| A5960_RS05220 () | 996240..996899 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| A5960_RS05225 () | 997108..999168 | + | 2061 | WP_000936951.1 | oligopeptidase B | - |
| A5960_RS05230 () | 999165..999827 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| A5960_RS05235 () | 999851..1000507 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| A5960_RS05240 () | 1000609..1000839 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A5960_RS05245 () | 1000978..1001352 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| A5960_RS05250 () | 1001356..1002228 | + | 873 | WP_099528345.1 | copper homeostasis membrane protein CopD | - |
| A5960_RS05255 () | 1002241..1002582 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - () | 1002610..1002881 | - | 272 | - | - | Antitoxin Detail |
| - () | 1002740..1002843 | + | 104 | - | - | Toxin Detail |
| A5960_RS05260 () | 1002978..1003634 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| A5960_RS05265 () | 1003635..1003826 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A5960_RS05270 () | 1003931..1004167 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A5960_RS05275 () | 1004285..1005724 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A5960_RS05280 () | 1005804..1008437 | - | 2634 | WP_032281032.1 | lipid-binding membrane homeostasis protein YebT | - |
| A5960_RS05285 () | 1008406..1009689 | - | 1284 | WP_001207283.1 | membrane integrity lipid transport subunit YebS | - |
| A5960_RS05290 () | 1009819..1010316 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|