MGE detailed information
MGE type: Prophage MGE length: 68443 bp
Accession: NZ_CP024289 Location: 1788534..1856976 Organism: Escherichia coli O178:H19 strain 2012C-4431 Replicon: chromosome
Accession: NZ_CP024289 Location: 1788534..1856976 Organism: Escherichia coli O178:H19 strain 2012C-4431 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5960_RS09450 () | 1783553..1784194 | + | 642 | WP_001297479.1 | high frequency lysogenization protein HflD | - |
| A5960_RS09455 () | 1784198..1785568 | + | 1371 | WP_000423729.1 | adenylosuccinate lyase | - |
| A5960_RS09460 () | 1785736..1786407 | + | 672 | WP_001265481.1 | two-component system response regulator PhoP | - |
| A5960_RS09465 () | 1786407..1787867 | + | 1461 | WP_000735412.1 | two-component system sensor histidine kinase PhoQ | - |
| A5960_RS09470 () | 1788534..1788815 | - | 282 | WP_028985837.1 | hypothetical protein | - |
| A5960_RS09480 () | 1789073..1790962 | - | 1890 | WP_050867864.1 | Clp protease ClpP | - |
| A5960_RS09490 () | 1791621..1792043 | - | 423 | WP_032307311.1 | single-stranded DNA-binding protein | - |
| A5960_RS09495 () | 1792040..1792291 | - | 252 | WP_032307310.1 | hypothetical protein | - |
| A5960_RS09505 () | 1792493..1793902 | - | 1410 | WP_047090986.1 | helicase RepA family protein | - |
| A5960_RS09510 () | 1793899..1794198 | - | 300 | WP_000770163.1 | DUF4222 domain-containing protein | - |
| A5960_RS09515 () | 1794204..1794437 | - | 234 | WP_001204973.1 | hypothetical protein | - |
| A5960_RS09520 () | 1794439..1794660 | - | 222 | WP_052904140.1 | hypothetical protein | - |
| A5960_RS09525 () | 1794653..1794892 | - | 240 | WP_052904139.1 | hypothetical protein | - |
| A5960_RS09530 () | 1794882..1795094 | - | 213 | WP_000609225.1 | hypothetical protein | - |
| A5960_RS09535 () | 1795087..1795644 | - | 558 | WP_157774579.1 | host cell division inhibitor Icd-like protein | - |
| A5960_RS28150 () | 1795843..1796148 | + | 306 | WP_001403025.1 | hypothetical protein | - |
| A5960_RS28155 () | 1796206..1796433 | + | 228 | WP_157774580.1 | hypothetical protein | - |
| A5960_RS09545 () | 1796654..1796833 | + | 180 | WP_000103621.1 | hypothetical protein | - |
| A5960_RS28160 () | 1796891..1797094 | + | 204 | WP_000182306.1 | hypothetical protein | - |
| A5960_RS09555 () | 1797338..1797526 | - | 189 | WP_000953271.1 | AlpA family transcriptional regulator | - |
| A5960_RS09560 () | 1797901..1799130 | - | 1230 | WP_096970353.1 | site-specific integrase | - |
| A5960_RS09565 () | 1799379..1800500 | + | 1122 | WP_001295435.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| A5960_RS09570 () | 1800646..1801875 | - | 1230 | WP_099528378.1 | peptidase T | - |
| A5960_RS09580 () | 1802125..1803261 | + | 1137 | WP_000531601.1 | spermidine/putrescine ABC transporter ATP-binding protein PotA | - |
| A5960_RS09585 () | 1803245..1804108 | + | 864 | WP_000799399.1 | spermidine/putrescine ABC transporter permease PotB | - |
| A5960_RS09590 () | 1804274..1804603 | + | 330 | WP_022581964.1 | YkgJ family cysteine cluster protein | - |
| A5960_RS09595 () | 1804767..1805441 | - | 675 | WP_001373129.1 | DUF4376 domain-containing protein | - |
| A5960_RS09600 () | 1805453..1805665 | - | 213 | WP_000438830.1 | hypothetical protein | - |
| A5960_RS09605 () | 1805675..1807378 | - | 1704 | WP_047082338.1 | prophage tail fiber N-terminal domain-containing protein | - |
| A5960_RS09610 () | 1807523..1807663 | - | 141 | WP_000078855.1 | Hok/Gef family protein | - |
| A5960_RS09615 () | 1807862..1811548 | - | 3687 | WP_099528379.1 | DUF1983 domain-containing protein | - |
| A5960_RS09620 () | 1811788..1812420 | - | 633 | WP_072121435.1 | tail assembly protein | - |
| A5960_RS09625 () | 1812366..1813109 | - | 744 | WP_062867322.1 | C40 family peptidase | - |
| A5960_RS09630 () | 1813120..1813818 | - | 699 | WP_001365876.1 | phage minor tail protein L | - |
| A5960_RS09635 () | 1813818..1814147 | - | 330 | WP_000847280.1 | phage tail protein | - |
| A5960_RS09640 () | 1814144..1816750 | - | 2607 | WP_064506725.1 | phage tail tape measure protein | - |
| A5960_RS09645 () | 1816740..1817144 | - | 405 | WP_047081971.1 | phage tail assembly protein T | - |
| A5960_RS09650 () | 1817171..1817602 | - | 432 | WP_032330778.1 | phage minor tail protein G | - |
| A5960_RS09655 () | 1817622..1818371 | - | 750 | WP_000235129.1 | phage tail protein | - |
| A5960_RS09660 () | 1818379..1818777 | - | 399 | WP_000682716.1 | tail protein | - |
| A5960_RS09665 () | 1818790..1819413 | - | 624 | WP_047082262.1 | phage tail protein | - |
| A5960_RS09670 () | 1819416..1819697 | - | 282 | WP_001281349.1 | hypothetical protein | - |
| A5960_RS09675 () | 1819690..1820016 | - | 327 | WP_001097065.1 | DUF2190 family protein | - |
| A5960_RS09680 () | 1820104..1822128 | - | 2025 | WP_001114424.1 | Clp protease ClpP | - |
| A5960_RS09685 () | 1822073..1823575 | - | 1503 | WP_062865652.1 | phage portal protein | - |
| A5960_RS09690 () | 1823575..1823787 | - | 213 | WP_157774581.1 | hypothetical protein | - |
| A5960_RS09695 () | 1823784..1825907 | - | 2124 | WP_001077608.1 | phage terminase large subunit family protein | - |
| A5960_RS09700 () | 1825904..1826380 | - | 477 | WP_000373398.1 | DUF1441 family protein | - |
| A5960_RS28165 () | 1826855..1827040 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| A5960_RS09715 () | 1827559..1828092 | - | 534 | WP_001092868.1 | lysozyme | - |
| A5960_RS09720 () | 1828604..1829089 | - | 486 | WP_001457151.1 | hypothetical protein | - |
| A5960_RS09725 () | 1829093..1829308 | - | 216 | WP_000284510.1 | class II holin family protein | - |
| A5960_RS09730 () | 1829386..1829631 | - | 246 | WP_001290230.1 | DUF826 domain-containing protein | - |
| A5960_RS09735 () | 1829672..1829851 | - | 180 | WP_000143458.1 | DUF1378 family protein | - |
| A5960_RS09740 () | 1830002..1831948 | - | 1947 | WP_062865884.1 | DUF1737 domain-containing protein | - |
| A5960_RS09750 () | 1832461..1832730 | - | 270 | WP_000738080.1 | Shiga toxin Stx2c subunit B | - |
| A5960_RS09755 () | 1832742..1833701 | - | 960 | WP_001365055.1 | Shiga toxin Stx2d subunit A | - |
| A5960_RS09775 () | 1834084..1835142 | - | 1059 | WP_099528381.1 | site-specific DNA-methyltransferase | - |
| A5960_RS28175 () | 1835294..1835491 | - | 198 | WP_000917741.1 | hypothetical protein | - |
| A5960_RS09785 () | 1835734..1836264 | - | 531 | WP_001367730.1 | DUF1133 family protein | - |
| A5960_RS09790 () | 1836273..1836632 | - | 360 | WP_000904149.1 | RusA family crossover junction endodeoxyribonuclease | - |
| A5960_RS09795 () | 1836645..1837694 | - | 1050 | WP_099528382.1 | DUF968 domain-containing protein | - |
| A5960_RS09800 () | 1837696..1837968 | - | 273 | WP_001341173.1 | hypothetical protein | - |
| A5960_RS09805 () | 1838135..1838290 | - | 156 | WP_198406609.1 | Hok/Gef family protein | - |
| A5960_RS28465 () | 1838722..1838898 | - | 177 | WP_000753060.1 | hypothetical protein | - |
| A5960_RS09810 () | 1838891..1839073 | - | 183 | WP_001224668.1 | hypothetical protein | - |
| A5960_RS09815 () | 1839221..1839526 | - | 306 | WP_072095369.1 | DUF4406 domain-containing protein | - |
| A5960_RS09820 () | 1839523..1839804 | - | 282 | WP_072094476.1 | DNA-binding protein | - |
| A5960_RS09825 () | 1839837..1840553 | - | 717 | WP_047082289.1 | DUF1627 domain-containing protein | - |
| A5960_RS28180 () | 1840587..1841129 | - | 543 | WP_072130322.1 | replication protein | - |
| A5960_RS28185 () | 1841041..1842072 | - | 1032 | WP_028985607.1 | phage replisome organiser | - |
| A5960_RS09840 () | 1842141..1842566 | - | 426 | WP_000693925.1 | Rha family transcriptional regulator | - |
| A5960_RS09845 () | 1842550..1842822 | - | 273 | WP_000887454.1 | helix-turn-helix domain-containing protein | - |
| A5960_RS09850 () | 1842931..1843332 | + | 402 | WP_000986593.1 | helix-turn-helix domain-containing protein | - |
| A5960_RS09855 () | 1843360..1843551 | + | 192 | WP_044705396.1 | hypothetical protein | Antitoxin Detail |
| A5960_RS09860 () | 1843551..1843838 | + | 288 | WP_032351442.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A5960_RS09865 () | 1844113..1844265 | + | 153 | WP_047082292.1 | DUF1391 family protein | - |
| A5960_RS28190 () | 1844421..1844678 | + | 258 | WP_122993601.1 | hypothetical protein | - |
| A5960_RS09875 () | 1844759..1844944 | - | 186 | WP_000389971.1 | hypothetical protein | - |
| A5960_RS09885 () | 1845491..1845679 | + | 189 | WP_044808604.1 | cell division inhibitor | - |
| A5960_RS09890 () | 1845676..1845864 | + | 189 | WP_000092782.1 | DUF1482 family protein | - |
| A5960_RS09895 () | 1845960..1848389 | + | 2430 | WP_062865829.1 | exonuclease | - |
| A5960_RS09900 () | 1848451..1848720 | + | 270 | WP_000003742.1 | excisionase | - |
| A5960_RS09905 () | 1848689..1849807 | + | 1119 | WP_047082091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| A5960_RS09910 () | 1849974..1850768 | + | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| A5960_RS09915 () | 1850765..1851811 | + | 1047 | WP_000759318.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| A5960_RS09920 () | 1851869..1852330 | + | 462 | WP_001341497.1 | DUF3592 domain-containing protein | - |
| A5960_RS09925 () | 1852327..1853115 | + | 789 | WP_000713472.1 | TPM domain-containing protein | - |
| A5960_RS09930 () | 1853254..1854075 | - | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| A5960_RS09935 () | 1854091..1855002 | - | 912 | WP_000291270.1 | N-acetylglucosamine kinase | - |
| A5960_RS09940 () | 1855031..1856275 | - | 1245 | WP_001251348.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| A5960_RS09945 () | 1856275..1856976 | - | 702 | WP_001033694.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| A5960_RS09950 () | 1856969..1858168 | - | 1200 | WP_000284709.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| A5960_RS09955 () | 1858430..1859503 | + | 1074 | WP_000810250.1 | acyltransferase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|