MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 38177 bp
Accession: NZ_CP024276 Location: 1..38177 Organism: Escherichia coli O6:H16 strain M9682-C1 Replicon: plasmid unnamed1
Accession: NZ_CP024276 Location: 1..38177 Organism: Escherichia coli O6:H16 strain M9682-C1 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG40_RS24915 () | 1..405 | + | 405 | WP_074576690.1 | IS21 family transposase ISEc62 | Transposase |
| COG40_RS24920 () | 464..796 | + | 333 | Protein_1 | hypothetical protein | VF |
| COG40_RS24930 () | 1173..1850 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| COG40_RS24935 () | 1850..2197 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| COG40_RS24940 () | 2217..3788 | + | 1572 | WP_047608463.1 | IS66 family transposase ISCro1 | Transposase |
| COG40_RS24945 () | 3815..4621 | - | 807 | WP_001705702.1 | DUF945 domain-containing protein | - |
| COG40_RS24950 () | 4732..5028 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| COG40_RS26335 () | 5368..5685 | + | 318 | WP_000820288.1 | hypothetical protein | - |
| COG40_RS24970 () | 5923..6084 | - | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 6150..6284 | - | 135 | NuclAT_0 | - | - |
| - () | 6150..6284 | - | 135 | NuclAT_0 | - | - |
| - () | 6150..6284 | - | 135 | NuclAT_0 | - | - |
| - () | 6150..6284 | - | 135 | NuclAT_0 | - | - |
| COG40_RS24980 () | 6260..6778 | - | 519 | WP_001178556.1 | hypothetical protein | - |
| COG40_RS24985 () | 6778..8454 | - | 1677 | WP_052158500.1 | plasmid SOS inhibition protein A | - |
| COG40_RS24990 () | 8518..8751 | - | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| COG40_RS24995 () | 8808..9335 | - | 528 | WP_000290820.1 | single-stranded DNA-binding protein | - |
| COG40_RS26340 () | 9637..10069 | + | 433 | Protein_13 | hypothetical protein | - |
| COG40_RS25020 () | 10155..10718 | - | 564 | WP_001297832.1 | class I SAM-dependent methyltransferase | - |
| COG40_RS25025 () | 10765..12126 | - | 1362 | WP_000170687.1 | DUF3560 domain-containing protein | - |
| COG40_RS25030 () | 12178..12408 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| COG40_RS25050 () | 13014..13436 | - | 423 | WP_047608407.1 | DUF1380 family protein | - |
| COG40_RS25055 () | 13483..13785 | - | 303 | WP_072105978.1 | antirestriction protein | - |
| COG40_RS25065 () | 14320..15090 | - | 771 | WP_023486083.1 | hypothetical protein | - |
| COG40_RS25070 () | 15135..15569 | - | 435 | WP_000274493.1 | DUF1380 family protein | - |
| COG40_RS25075 () | 15583..15804 | - | 222 | WP_047608411.1 | hypothetical protein | - |
| COG40_RS25080 () | 15805..16488 | - | 684 | WP_023485601.1 | DNA methylase | - |
| COG40_RS25085 () | 16564..16875 | - | 312 | WP_012680995.1 | hypothetical protein | - |
| COG40_RS25090 () | 16872..17775 | - | 904 | Protein_24 | DUF1281 domain-containing protein | - |
| COG40_RS26345 () | 17971..18123 | + | 153 | WP_001300268.1 | hypothetical protein | - |
| COG40_RS25100 () | 18199..18621 | - | 423 | WP_000774834.1 | plasmid partitioning/stability family protein | - |
| COG40_RS25105 () | 18624..19604 | - | 981 | WP_001218105.1 | plasmid segregation protein ParM | - |
| COG40_RS25110 () | 19806..19925 | + | 120 | Protein_28 | transposase domain-containing protein | - |
| COG40_RS25115 () | 19993..20211 | - | 219 | WP_000862856.1 | hypothetical protein | - |
| COG40_RS25120 () | 20607..21304 | - | 698 | Protein_30 | IS1 family transposase | - |
| COG40_RS25125 () | 21441..22118 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| COG40_RS25130 () | 22118..22465 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| COG40_RS25135 () | 22485..24056 | + | 1572 | WP_047608463.1 | IS66 family transposase ISCro1 | Transposase |
| COG40_RS26350 () | 24103..24279 | - | 177 | Protein_34 | IS3 family transposase ISBope1 | Transposase |
| COG40_RS25145 () | 24380..24741 | + | 362 | Protein_35 | Tn3 family transposase | - |
| COG40_RS25150 () | 25507..29601 | + | 4095 | WP_001394776.1 | Serine protease EatA | VF |
| COG40_RS25155 () | 29944..30647 | - | 704 | Protein_37 | helix-turn-helix domain-containing protein | - |
| COG40_RS25160 () | 30895..31575 | + | 681 | WP_000452091.1 | EAL domain-containing protein | - |
| COG40_RS25170 () | 32015..32656 | - | 642 | WP_001705742.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| COG40_RS25175 () | 32986..33699 | - | 714 | WP_000016957.1 | site-specific integrase | - |
| COG40_RS25180 () | 33700..34005 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| COG40_RS25185 () | 34007..34225 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| COG40_RS25195 () | 34670..34927 | + | 258 | WP_000343092.1 | hypothetical protein | - |
| COG40_RS25200 () | 34927..35457 | + | 531 | WP_011387704.1 | hypothetical protein | - |
| COG40_RS25205 () | 35701..36543 | + | 843 | WP_160371899.1 | polysaccharide deacetylase family protein | - |
| COG40_RS25210 () | 36546..37634 | + | 1089 | Protein_46 | putative hexosyltransferase CapU | - |
| COG40_RS25215 () | 37639..38177 | + | 539 | Protein_47 | virulence factor VirK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|