MGE detailed information
MGE type: Conjugative plasmid MGE length: 95350 bp
Accession: NZ_CP024268 Location: 1..95350 Organism: Escherichia coli O6:H16 strain F6699 Replicon: plasmid unnamed2
Accession: NZ_CP024268 Location: 1..95350 Organism: Escherichia coli O6:H16 strain F6699 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG39_RS24380 (1) | 1..790 | - | 790 | Protein_0 | IS3-like element IS3 family transposase | - |
| COG39_RS24385 (857) | 857..1102 | - | 246 | Protein_1 | IS256 family transposase IS1414 | Transposase |
| COG39_RS24390 (1264) | 1264..1620 | - | 357 | WP_013188496.1 | hypothetical protein | - |
| COG39_RS24405 (3499) | 3499..4661 | - | 1163 | Protein_4 | IS3 family transposase ISEc17 | Transposase |
| COG39_RS24410 (4844) | 4844..5470 | - | 627 | WP_000593828.1 | ABC transporter ATP-binding protein | - |
| COG39_RS24415 (5463) | 5463..6230 | - | 768 | WP_001394312.1 | hypothetical protein | - |
| COG39_RS24420 (6193) | 6193..7395 | - | 1203 | WP_001394311.1 | TolC family protein | - |
| COG39_RS24425 (7392) | 7392..8521 | - | 1130 | Protein_8 | ABC transporter permease | - |
| COG39_RS24430 (9080) | 9080..9898 | - | 819 | Protein_9 | IS630 family transposase | - |
| COG39_RS24435 (10014) | 10014..10310 | + | 297 | WP_001355719.1 | hypothetical protein | - |
| COG39_RS24440 (10310) | 10310..11141 | + | 832 | Protein_11 | transposase zinc-binding domain-containing protein | - |
| COG39_RS24445 (11415) | 11415..12112 | + | 698 | WP_236920210.1 | IS1-like element IS1A family transposase | - |
| COG39_RS24450 (12235) | 12235..12369 | - | 135 | WP_271359317.1 | ANR family transcriptional regulator | - |
| COG39_RS24455 (12627) | 12627..13424 | + | 798 | WP_000346363.1 | CFA/I fimbrial subunit D | VF |
| COG39_RS24460 (13793) | 13793..14624 | - | 832 | Protein_15 | transposase zinc-binding domain-containing protein | - |
| COG39_RS24465 (14624) | 14624..15046 | - | 423 | WP_012131092.1 | hypothetical protein | - |
| COG39_RS25735 (15157) | 15157..15549 | - | 393 | WP_000434829.1 | IS3 family transposase ISPa31 | Transposase |
| COG39_RS25740 (15803) | 15803..16309 | - | 507 | WP_013188494.1 | CS3 fimbrial subunit A | VF |
| COG39_RS24480 (16331) | 16331..16810 | - | 480 | WP_236920212.1 | outer membrane usher CS3-2 domain protein | - |
| COG39_RS25745 (16939) | 16939..17130 | - | 192 | WP_001342359.1 | F1 capsule-anchoring protein | VF |
| COG39_RS24485 (17281) | 17281..19382 | - | 2102 | Protein_21 | F1 capsule-anchoring protein | VF |
| COG39_RS24490 (19357) | 19357..20082 | - | 726 | WP_001391304.1 | Chaperone protein caf1M | VF |
| COG39_RS24495 (20561) | 20561..20813 | - | 253 | Protein_23 | IS3 family transposase | - |
| COG39_RS24500 (20940) | 20940..21737 | - | 798 | WP_000544814.1 | IS21 family transposase IS21 | Transposase |
| COG39_RS24505 (21737) | 21737..22902 | - | 1166 | Protein_25 | IS21 family transposase IS21 | Transposase |
| COG39_RS24510 (22984) | 22984..23160 | - | 177 | Protein_26 | transposase domain-containing protein | - |
| COG39_RS24515 (23221) | 23221..24350 | + | 1130 | Protein_27 | IS110 family transposase ISEc45 | Transposase |
| COG39_RS25750 (24603) | 24603..25833 | - | 1231 | Protein_28 | IS66 family transposase | - |
| COG39_RS24525 (26043) | 26043..26351 | - | 309 | WP_000030204.1 | molecular chaperone GroEL | - |
| COG39_RS24530 (26438) | 26438..27082 | - | 645 | WP_001144037.1 | ParA family protein | - |
| COG39_RS24535 (27260) | 27260..28066 | - | 807 | WP_000016960.1 | site-specific integrase | - |
| COG39_RS24540 (28067) | 28067..28372 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| COG39_RS24545 (28374) | 28374..28592 | - | 219 | WP_000829078.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| COG39_RS24560 (29114) | 29114..29371 | + | 258 | WP_000343095.1 | hypothetical protein | - |
| COG39_RS24565 (29371) | 29371..29892 | + | 522 | WP_044307843.1 | hypothetical protein | - |
| COG39_RS24570 (30136) | 30136..30978 | + | 843 | WP_162749921.1 | polysaccharide deacetylase family protein | - |
| COG39_RS24575 (30981) | 30981..32069 | + | 1089 | WP_012131088.1 | putative hexosyltransferase CapU | - |
| COG39_RS24580 (32074) | 32074..33024 | + | 951 | WP_001398306.1 | virulence factor VirK | - |
| COG39_RS24585 (33089) | 33089..34032 | + | 944 | Protein_39 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| COG39_RS24590 (34094) | 34094..34339 | - | 246 | Protein_40 | transposase | - |
| COG39_RS24595 (34424) | 34424..35607 | + | 1184 | Protein_41 | IS3 family transposase ISKpn38 | Transposase |
| COG39_RS24600 (35669) | 35669..35836 | - | 168 | Protein_42 | IS91 family transposase ISSbo1 | Transposase |
| COG39_RS24605 (35884) | 35884..37422 | - | 1539 | WP_001394809.1 | IS66 family transposase ISEc8 | Transposase |
| COG39_RS24610 (37472) | 37472..37819 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| COG39_RS24615 (37816) | 37816..38196 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| COG39_RS25755 (38285) | 38285..38428 | - | 144 | Protein_46 | hypothetical protein | - |
| COG39_RS24620 (38488) | 38488..39649 | + | 1162 | Protein_47 | IS3 family transposase IS3 | Transposase |
| COG39_RS25760 (39680) | 39680..39748 | - | 69 | Protein_48 | hypothetical protein | - |
| COG39_RS24625 (39904) | 39904..40095 | - | 192 | WP_122994480.1 | ANR family transcriptional regulator | - |
| COG39_RS24630 (40281) | 40281..41515 | + | 1235 | WP_167553378.1 | IS3 family transposase IS2 | Transposase |
| COG39_RS24635 (41681) | 41681..42375 | + | 695 | WP_085950855.1 | IS1 family transposase | - |
| COG39_RS25220 (42464) | 42464..42691 | - | 228 | WP_140159966.1 | hypothetical protein | - |
| COG39_RS24645 (42732) | 42732..43409 | + | 678 | WP_001704819.1 | IS66 family transposase ISCro1 | Transposase |
| COG39_RS24650 (43409) | 43409..43756 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| COG39_RS24655 (43776) | 43776..45346 | + | 1571 | Protein_55 | IS66 family transposase ISCro1 | Transposase |
| COG39_RS24660 (45350) | 45350..46162 | - | 813 | WP_001393437.1 | hypothetical protein | - |
| COG39_RS24670 (47076) | 47076..47933 | - | 858 | WP_134881246.1 | incFII family plasmid replication initiator RepA | - |
| COG39_RS24675 (47926) | 47926..48000 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| COG39_RS24685 (48236) | 48236..48491 | - | 256 | Protein_59 | replication regulatory protein RepA | - |
| COG39_RS24690 (48731) | 48731..49321 | - | 591 | WP_001393319.1 | DUF2726 domain-containing protein | - |
| COG39_RS24695 (49473) | 49473..50099 | - | 627 | WP_001393151.1 | NYN domain-containing protein | - |
| COG39_RS24700 (50512) | 50512..50721 | - | 210 | WP_001297500.1 | hypothetical protein | - |
| COG39_RS24705 (50852) | 50852..51412 | - | 561 | WP_000840475.1 | fertility inhibition protein FinO | - |
| COG39_RS24710 (51515) | 51515..52375 | - | 861 | WP_000704511.1 | putative protein YcjY | VF |
| COG39_RS24715 (52434) | 52434..52739 | - | 306 | Protein_65 | type-F conjugative transfer system pilin acetylase TraX | - |
| COG39_RS24720 (52732) | 52732..54758 | - | 2027 | Protein_66 | Multifunctional conjugation protein TraI | Relaxase |
| COG39_RS24725 (54758) | 54758..56973 | - | 2216 | Protein_67 | type IV conjugative transfer system coupling protein TraD | - |
| COG39_RS24730 (57024) | 57024..57761 | - | 738 | WP_000199908.1 | hypothetical protein | - |
| COG39_RS24735 (57964) | 57964..58677 | - | 714 | WP_099550612.1 | conjugal transfer complement resistance protein TraT | - |
| COG39_RS24740 (58721) | 58721..59242 | - | 522 | WP_013188483.1 | conjugal transfer entry exclusion protein TraS | - |
| COG39_RS24745 (59275) | 59275..62091 | - | 2817 | WP_001395538.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| COG39_RS24750 (62088) | 62088..63461 | - | 1374 | WP_001393322.1 | conjugal transfer pilus assembly protein TraH | - |
| COG39_RS24755 (63448) | 63448..63840 | - | 393 | WP_000138370.1 | F-type conjugal transfer protein TrbF | - |
| COG39_RS24760 (63794) | 63794..64108 | - | 315 | WP_001417954.1 | P-type conjugative transfer protein TrbJ | - |
| COG39_RS24765 (64098) | 64098..64427 | - | 330 | Protein_75 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| COG39_RS24770 (64591) | 64591..65307 | - | 717 | Protein_76 | type-F conjugative transfer system secretin TraK | - |
| COG39_RS24775 (65294) | 65294..65860 | - | 567 | WP_000399782.1 | type IV conjugative transfer system protein TraE | - |
| COG39_RS24780 (65882) | 65882..66193 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| COG39_RS24785 (66198) | 66198..66560 | - | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| COG39_RS24790 (66593) | 66593..66820 | - | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| COG39_RS24795 (66957) | 66957..67628 | - | 672 | WP_000283565.1 | conjugal transfer transcriptional regulator TraJ | - |
| COG39_RS24800 (67832) | 67832..68206 | - | 375 | WP_249929231.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| COG39_RS24810 (68622) | 68622..69130 | + | 509 | Protein_83 | hypothetical protein | VF |
| COG39_RS24815 (69426) | 69426..70246 | - | 821 | Protein_84 | DUF932 domain-containing protein | - |
| COG39_RS24820 (70363) | 70363..70650 | - | 288 | WP_000107522.1 | hypothetical protein | - |
| COG39_RS24830 (70806) | 70806..71108 | - | 303 | WP_001272235.1 | hypothetical protein | - |
| COG39_RS25765 (71425) | 71425..71785 | + | 361 | Protein_87 | hypothetical protein | - |
| COG39_RS24850 (72023) | 72023..72148 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | - |
| COG39_RS25770 (72090) | 72090..72239 | - | 150 | Protein_89 | plasmid maintenance protein Mok | - |
| - (72246) | 72246..72440 | - | 195 | NuclAT_0 | - | - |
| - (72246) | 72246..72440 | - | 195 | NuclAT_0 | - | - |
| - (72246) | 72246..72440 | - | 195 | NuclAT_0 | - | - |
| - (72246) | 72246..72440 | - | 195 | NuclAT_0 | - | - |
| COG39_RS24855 (72412) | 72412..73172 | - | 761 | Protein_90 | plasmid SOS inhibition protein A | - |
| COG39_RS24860 (73169) | 73169..73603 | - | 435 | WP_000845954.1 | conjugation system SOS inhibitor PsiB | - |
| COG39_RS25775 (73658) | 73658..75625 | - | 1968 | Protein_92 | ParB/RepB/Spo0J family partition protein | - |
| COG39_RS24875 (75700) | 75700..76058 | - | 359 | Protein_93 | IS3 family transposase | - |
| COG39_RS24880 (76081) | 76081..76506 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| COG39_RS24885 (76503) | 76503..76853 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| COG39_RS24890 (76884) | 76884..78497 | + | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| COG39_RS25780 (78584) | 78584..78664 | + | 81 | Protein_97 | hypothetical protein | - |
| COG39_RS24900 (78661) | 78661..79811 | + | 1151 | Protein_98 | IS30 family transposase IS30D | Transposase |
| COG39_RS24905 (79818) | 79818..80714 | + | 897 | Protein_99 | IS3 family transposase ISSd1 | Transposase |
| COG39_RS24910 (81035) | 81035..81409 | - | 375 | WP_013188479.1 | Heat-labile enterotoxin B chain | VF |
| COG39_RS24915 (81406) | 81406..82182 | - | 777 | WP_001378495.1 | Heat-labile enterotoxin A chain | VF |
| COG39_RS24925 (82499) | 82499..82771 | + | 273 | WP_000019162.1 | hypothetical protein | - |
| COG39_RS24930 (82752) | 82752..83243 | + | 492 | Protein_103 | IS91 family transposase ISSbo1 | Transposase |
| COG39_RS24935 (83393) | 83393..83767 | + | 375 | WP_029238993.1 | IS3 family transposase ISCARN101 | Transposase |
| COG39_RS24940 (83793) | 83793..84531 | + | 739 | Protein_105 | IS3 family transposase IS629 | Transposase |
| COG39_RS24950 (85204) | 85204..86712 | + | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
| COG39_RS24955 (86906) | 86906..87688 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| COG39_RS24960 (87685) | 87685..88708 | - | 1024 | Protein_108 | IS21 family transposase IS100kyp | Transposase |
| COG39_RS24965 (88786) | 88786..89235 | + | 450 | Protein_109 | IS3 family transposase IS629 | Transposase |
| COG39_RS24970 (89279) | 89279..90145 | - | 867 | Protein_110 | IS110 family transposase ISEc45 | Transposase |
| COG39_RS24975 (90206) | 90206..90400 | + | 195 | Protein_111 | transposase domain-containing protein | - |
| COG39_RS24980 (90666) | 90666..90915 | - | 250 | Protein_112 | transposase | - |
| COG39_RS24985 (91022) | 91022..91240 | - | 219 | WP_013188501.1 | Heat-stable enterotoxin A3/A4 | VF |
| COG39_RS24990 (91619) | 91619..92038 | + | 420 | Protein_114 | IS3 family transposase ISBmu11 | Transposase |
| COG39_RS24995 (92232) | 92232..92561 | + | 330 | WP_000471255.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| COG39_RS25000 (92542) | 92542..92823 | + | 282 | WP_000780221.1 | helix-turn-helix transcriptional regulator | - |
| COG39_RS25785 (93146) | 93146..93481 | + | 336 | WP_249929232.1 | HNH endonuclease | - |
| COG39_RS25790 (93532) | 93532..94089 | + | 558 | WP_249929233.1 | hypothetical protein | - |
| COG39_RS25015 (94156) | 94156..94506 | - | 351 | WP_001393279.1 | plasmid partitioning/stability family protein | - |
| COG39_RS25020 (94509) | 94509..95350 | - | 842 | WP_134881248.1 | plasmid segregation protein ParM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|