MGE detailed information
MGE type: IScluster/Tn MGE length: 30454 bp
Accession: NZ_CP024259 Location: 58927..89380 Organism: Escherichia coli O25:H16 strain F5505-C1 Replicon: plasmid unnamed2
Accession: NZ_CP024259 Location: 58927..89380 Organism: Escherichia coli O25:H16 strain F5505-C1 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG37_RS26500 () | 54694..55434 | - | 741 | WP_099554542.1 | type-F conjugative transfer system secretin TraK | - |
| COG37_RS26505 () | 55424..55986 | - | 563 | Protein_56 | type IV conjugative transfer system protein TraE | - |
| COG37_RS26510 () | 56006..56311 | - | 306 | WP_001735616.1 | type IV conjugative transfer system protein TraL | - |
| COG37_RS26515 () | 56313..56672 | - | 360 | WP_001735617.1 | type IV conjugative transfer system pilin TraA | - |
| COG37_RS27060 () | 56770..56937 | - | 168 | WP_157187929.1 | hypothetical protein | - |
| COG37_RS26520 () | 57153..57434 | - | 282 | WP_000974581.1 | hypothetical protein | - |
| COG37_RS26525 () | 57914..58300 | - | 387 | WP_024169848.1 | relaxosome protein TraM | - |
| COG37_RS26535 () | 58927..60089 | + | 1163 | WP_099554545.1 | IS3-like element IS3 family transposase | - |
| COG37_RS26540 () | 60127..60213 | + | 87 | WP_071594245.1 | IS3 family transposase | - |
| COG37_RS26545 () | 60245..60337 | + | 93 | Protein_64 | integrase core domain-containing protein | - |
| COG37_RS26550 () | 60375..60461 | + | 87 | WP_071594245.1 | IS3 family transposase | - |
| COG37_RS26555 () | 60599..61063 | + | 465 | WP_001735678.1 | CS6 fimbrial subunit CssA | - |
| COG37_RS26560 () | 61081..61584 | + | 504 | WP_001297627.1 | CS6 fimbrial subunit CssB | - |
| COG37_RS26565 () | 61637..62335 | + | 699 | WP_024169853.1 | CS6 fimbrial biogenesis chaperone CssC | - |
| COG37_RS26570 () | 62292..64751 | + | 2460 | WP_157195932.1 | CS6 fimbrial usher CssD | - |
| COG37_RS26580 () | 65066..65626 | - | 561 | Protein_70 | IS3 family transposase | - |
| COG37_RS26585 () | 65688..67651 | + | 1964 | Protein_71 | ParB/RepB/Spo0J family partition protein | - |
| COG37_RS26590 () | 67706..68140 | + | 435 | WP_000845954.1 | conjugation system SOS inhibitor PsiB | - |
| COG37_RS26595 () | 68137..68856 | + | 720 | WP_001734594.1 | plasmid SOS inhibition protein A | - |
| - () | 68868..69062 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 68868..69062 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 68868..69062 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 68868..69062 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| COG37_RS26605 () | 69127..69285 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| COG37_RS26610 () | 69579..71150 | - | 1572 | WP_099554548.1 | IS66 family transposase | - |
| COG37_RS26615 () | 71170..71517 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| COG37_RS26620 () | 71517..72194 | - | 678 | WP_099554551.1 | IS66-like element accessory protein TnpA | - |
| COG37_RS27235 () | 72504..72695 | + | 192 | Protein_78 | hypothetical protein | - |
| COG37_RS26635 () | 72748..73425 | + | 678 | WP_001339397.1 | IS66 family insertion sequence hypothetical protein | - |
| COG37_RS26640 () | 73425..73772 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| COG37_RS26645 () | 73792..75363 | + | 1572 | WP_000381395.1 | IS66 family transposase | - |
| COG37_RS26650 () | 75549..79649 | - | 4101 | WP_099558425.1 | serine protease autotransporter toxin EatA | - |
| COG37_RS26655 () | 79928..80622 | + | 695 | WP_088563528.1 | IS1 family transposase | - |
| COG37_RS26665 () | 81140..82353 | + | 1214 | WP_164997627.1 | IS3 family transposase | - |
| COG37_RS26670 () | 82398..83434 | + | 1037 | Protein_85 | IS3-like element IS3 family transposase | - |
| COG37_RS26675 () | 83579..83995 | - | 417 | WP_001735279.1 | plasmid partitioning/stability family protein | - |
| COG37_RS26680 () | 83988..84968 | - | 981 | WP_001735280.1 | plasmid segregation protein ParM | - |
| COG37_RS26685 () | 85380..85688 | - | 309 | WP_001735282.1 | hypothetical protein | - |
| COG37_RS26690 () | 85778..86419 | - | 642 | WP_001735283.1 | ParA family protein | - |
| COG37_RS26695 () | 86599..86799 | - | 201 | Protein_90 | tyrosine-type recombinase/integrase | - |
| COG37_RS26710 () | 88304..89380 | + | 1077 | WP_001734574.1 | IS110-like element ISEc21 family transposase | - |
| COG37_RS26715 () | 89397..89705 | + | 309 | Protein_93 | DDE-type integrase/transposase/recombinase | - |
| COG37_RS26720 () | 90438..90629 | + | 192 | WP_001736027.1 | hypothetical protein | - |
| COG37_RS26725 () | 90680..91366 | + | 687 | WP_024169890.1 | molecular chaperone | - |
| COG37_RS26730 () | 91378..93810 | + | 2433 | WP_001736029.1 | fimbrial biogenesis outer membrane usher protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|