MGE detailed information
MGE type: Conjugative plasmid MGE length: 107732 bp
Accession: NZ_CP024254 Location: 1..107732 Organism: Escherichia coli strain ATCC 43886 Replicon: plasmid unnamed1
Accession: NZ_CP024254 Location: 1..107732 Organism: Escherichia coli strain ATCC 43886 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS032_RS00010 () | 541..827 | - | 287 | Protein_2 | DUF905 domain-containing protein | - |
| CS032_RS00015 () | 885..1321 | - | 437 | Protein_3 | single-stranded DNA-binding protein | - |
| CS032_RS00030 () | 1789..2037 | - | 249 | WP_024189960.1 | hypothetical protein | - |
| CS032_RS27615 () | 2116..2292 | - | 177 | WP_164997622.1 | hypothetical protein | - |
| CS032_RS00040 () | 2360..2783 | - | 424 | Protein_6 | DUF1380 family protein | - |
| CS032_RS00045 () | 2830..3132 | - | 303 | WP_072106536.1 | antirestriction protein | - |
| CS032_RS27875 () | 3671..4439 | - | 769 | Protein_8 | hypothetical protein | - |
| CS032_RS00070 () | 4484..4918 | - | 435 | WP_000274421.1 | DUF1380 family protein | - |
| CS032_RS00075 () | 4932..5154 | - | 223 | Protein_10 | hypothetical protein | - |
| CS032_RS00080 () | 5155..5838 | - | 684 | WP_000086137.1 | DNA methylase | - |
| CS032_RS00085 () | 5914..6218 | - | 305 | Protein_12 | hypothetical protein | - |
| CS032_RS00090 () | 6222..7124 | - | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| CS032_RS00105 () | 7543..7791 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| CS032_RS00110 () | 7788..8225 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CS032_RS00115 () | 8225..9496 | + | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| CS032_RS00120 () | 9700..10326 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| CS032_RS27620 () | 10323..10625 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| CS032_RS00135 () | 11176..11700 | - | 525 | WP_072148161.1 | hypothetical protein | - |
| CS032_RS00140 () | 11760..12973 | + | 1214 | WP_164474068.1 | IS3 family transposase IS629 | Transposase |
| CS032_RS00145 () | 13017..13835 | - | 819 | Protein_21 | hypothetical protein | - |
| CS032_RS00155 () | 14189..14791 | + | 603 | WP_000517694.1 | hypothetical protein | - |
| CS032_RS27880 () | 14847..15029 | + | 183 | Protein_23 | hypothetical protein | - |
| CS032_RS27885 () | 15029..15295 | + | 267 | WP_000627831.1 | hypothetical protein | - |
| CS032_RS00175 () | 15486..15767 | - | 282 | WP_001105066.1 | hypothetical protein | - |
| CS032_RS00185 () | 15945..17153 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| CS032_RS00190 () | 17163..17534 | - | 372 | WP_035689358.1 | Transposon Tn10 TetD protein | VF |
| CS032_RS00195 () | 17667..18260 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| CS032_RS00200 () | 18373..19578 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| CS032_RS00205 () | 19660..20283 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| CS032_RS00210 () | 20261..20947 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| CS032_RS00215 () | 20955..21341 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| CS032_RS00220 () | 21334..21654 | - | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| CS032_RS00225 () | 22098..23303 | + | 1206 | WP_000599533.1 | sodium/glutamate symporter | - |
| CS032_RS00230 () | 23534..23653 | + | 120 | Protein_35 | LysR family transcriptional regulator | - |
| CS032_RS00235 () | 23669..24877 | - | 1209 | WP_001352368.1 | IS4 family transposase IS10R | Transposase |
| CS032_RS00245 () | 25029..25304 | - | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CS032_RS00250 () | 25304..25588 | - | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| CS032_RS00265 () | 26493..27365 | - | 873 | WP_000729438.1 | incFII family plasmid replication initiator RepA | - |
| CS032_RS00280 () | 28069..28710 | + | 642 | WP_000335849.1 | transcription termination factor NusG | - |
| CS032_RS00285 () | 28851..29513 | + | 663 | WP_000154142.1 | hypothetical protein | - |
| CS032_RS00295 () | 29780..30400 | + | 621 | WP_000176497.1 | DUF1449 family protein | - |
| CS032_RS00300 () | 30427..32121 | + | 1695 | WP_000482665.1 | flotillin family protein | - |
| CS032_RS00305 () | 32127..32444 | + | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| CS032_RS00310 () | 32560..32880 | + | 321 | WP_001447108.1 | hypothetical protein | - |
| CS032_RS00315 () | 33121..34191 | + | 1071 | WP_000730430.1 | hypothetical protein | VF |
| CS032_RS00320 () | 34195..34632 | + | 438 | WP_000539950.1 | hypothetical protein | VF |
| CS032_RS00325 () | 34664..36283 | + | 1620 | WP_001035558.1 | Outer membrane lipoprotein BfpB | VF |
| CS032_RS00330 () | 36304..37599 | + | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| CS032_RS00335 () | 37589..38047 | + | 459 | WP_000095885.1 | hypothetical protein | VF |
| CS032_RS00340 () | 38150..39658 | + | 1509 | WP_000880807.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CS032_RS00345 () | 39660..40754 | + | 1095 | WP_000697158.1 | type II secretion system F family protein | - |
| CS032_RS00350 () | 40816..41352 | + | 537 | WP_000111534.1 | hypothetical protein | VF |
| CS032_RS00355 () | 41397..41882 | + | 486 | WP_001080767.1 | hypothetical protein | VF |
| CS032_RS00360 () | 41898..42524 | + | 627 | WP_000939245.1 | prepilin peptidase | - |
| CS032_RS00365 () | 42542..43903 | + | 1362 | WP_001168171.1 | hypothetical protein | VF |
| CS032_RS00375 () | 44376..45197 | + | 822 | WP_000845373.1 | hypothetical protein | - |
| CS032_RS00380 () | 45299..46501 | + | 1203 | WP_000979994.1 | conjugal transfer protein TraF | - |
| CS032_RS00385 () | 46605..47063 | + | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| CS032_RS00390 () | 47060..47896 | + | 837 | WP_000745049.1 | hypothetical protein | VF |
| CS032_RS00395 () | 47880..49027 | + | 1148 | Protein_61 | putative protein YggR | VF |
| CS032_RS00400 () | 49024..49314 | + | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| CS032_RS00405 () | 49378..53438 | + | 4061 | Protein_63 | DNA primase | - |
| CS032_RS00415 () | 53816..54511 | + | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
| CS032_RS00420 () | 54522..55496 | + | 975 | WP_000547385.1 | hypothetical protein | VF |
| CS032_RS00425 () | 55500..56835 | + | 1336 | Protein_66 | conjugal transfer protein TraO | - |
| CS032_RS00430 () | 56832..57545 | + | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| CS032_RS00435 () | 57545..58072 | + | 528 | WP_001388619.1 | conjugal transfer protein TraQ | - |
| CS032_RS00440 () | 58119..58517 | + | 399 | WP_000088813.1 | hypothetical protein | - |
| CS032_RS00445 () | 58574..58825 | + | 252 | WP_001277573.1 | hypothetical protein | - |
| CS032_RS00450 () | 58740..59558 | + | 819 | WP_072105968.1 | conjugal transfer protein TraT | - |
| CS032_RS00460 () | 59853..62897 | + | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| CS032_RS00465 () | 62897..63517 | + | 621 | WP_000286854.1 | hypothetical protein | - |
| CS032_RS00470 () | 63475..64680 | + | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| CS032_RS00475 () | 64677..65246 | + | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| CS032_RS00480 () | 65321..67486 | + | 2166 | WP_000691808.1 | DotA/TraY family protein | - |
| CS032_RS00485 () | 67574..68227 | + | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CS032_RS00490 () | 68501..70086 | + | 1586 | Protein_78 | TnsA endonuclease N-terminal domain-containing protein | - |
| CS032_RS00495 () | 70224..70376 | - | 153 | WP_001335079.1 | Hok/Gef family protein | - |
| CS032_RS00500 () | 70706..70948 | + | 243 | WP_000650923.1 | hypothetical protein | - |
| CS032_RS00505 () | 71036..71227 | + | 192 | WP_000751583.1 | hypothetical protein | - |
| CS032_RS00510 () | 71239..71607 | + | 369 | WP_001345852.1 | hypothetical protein | - |
| CS032_RS00515 () | 71611..71826 | + | 216 | WP_000266543.1 | hypothetical protein | - |
| CS032_RS00525 () | 72024..72647 | - | 624 | WP_001155252.1 | DNA-binding protein | - |
| CS032_RS00530 () | 72806..73273 | + | 468 | WP_000598962.1 | thermonuclease family protein | - |
| CS032_RS27625 () | 73423..73599 | + | 177 | WP_001054907.1 | hypothetical protein | - |
| CS032_RS00535 () | 73662..73913 | - | 252 | WP_001081067.1 | hypothetical protein | - |
| CS032_RS27890 () | 74494..74640 | - | 147 | WP_001346191.1 | hypothetical protein | - |
| CS032_RS00545 () | 74978..76285 | + | 1308 | WP_000121918.1 | IncI1-type conjugal transfer protein TrbA | - |
| CS032_RS00550 () | 76282..77406 | + | 1125 | WP_000152378.1 | DsbC family protein | - |
| CS032_RS00555 () | 77387..79690 | + | 2304 | WP_000077663.1 | TraM recognition domain-containing protein | - |
| CS032_RS00575 () | 80554..81368 | + | 815 | Protein_92 | Dihydropteroate synthase | ARG |
| CS032_RS00580 () | 81455..81631 | + | 177 | Protein_93 | phosphoglucosamine mutase | - |
| CS032_RS00585 () | 81602..81880 | - | 279 | Protein_94 | integrase arm-type DNA-binding domain-containing protein | - |
| CS032_RS27630 () | 81978..82325 | + | 348 | WP_157700089.1 | hypothetical protein | - |
| CS032_RS00590 () | 82423..82854 | - | 432 | WP_001335086.1 | hypothetical protein | - |
| CS032_RS00595 () | 82922..85633 | - | 2712 | WP_000991384.1 | Protein TraI | Relaxase |
| CS032_RS00600 () | 85645..85977 | - | 333 | WP_001291058.1 | hypothetical protein | - |
| CS032_RS00605 () | 86210..86545 | + | 336 | WP_000157083.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| CS032_RS00610 () | 86631..87479 | - | 849 | WP_001077034.1 | DUF4942 domain-containing protein | - |
| CS032_RS00620 () | 88060..88311 | + | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| CS032_RS00625 () | 88342..88587 | - | 246 | WP_001260883.1 | hypothetical protein | - |
| CS032_RS00630 () | 88587..89513 | - | 927 | WP_000038335.1 | Recombination-promoting nuclease RpnA | VF |
| CS032_RS00635 () | 89510..89899 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| CS032_RS00640 () | 90076..90342 | - | 267 | WP_001247860.1 | hypothetical protein | - |
| CS032_RS00645 () | 90435..90869 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| CS032_RS00660 () | 91600..92100 | - | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
| CS032_RS00670 () | 92562..93158 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| CS032_RS00675 () | 93155..93874 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| CS032_RS00680 () | 93871..94304 | - | 434 | Protein_110 | conjugation system SOS inhibitor PsiB | - |
| CS032_RS00685 () | 94359..96317 | - | 1959 | WP_001145476.1 | ParB/RepB/Spo0J family partition protein | - |
| CS032_RS00690 () | 96376..96609 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| CS032_RS00695 () | 96666..97193 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| CS032_RS00705 () | 97545..97826 | - | 282 | WP_154671919.1 | hypothetical protein | - |
| CS032_RS00715 () | 97964..98155 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| CS032_RS00720 () | 98152..98574 | - | 423 | WP_000271688.1 | DUF1380 family protein | - |
| CS032_RS00725 () | 98621..98923 | - | 303 | WP_072106536.1 | antirestriction protein | - |
| CS032_RS00740 () | 99462..100232 | - | 771 | WP_001006204.1 | hypothetical protein | - |
| CS032_RS00745 () | 100277..100711 | - | 435 | WP_000274421.1 | DUF1380 family protein | - |
| CS032_RS00750 () | 100725..100946 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| CS032_RS00755 () | 100947..101630 | - | 684 | WP_000086137.1 | DNA methylase | - |
| CS032_RS00760 () | 101706..102010 | - | 305 | Protein_122 | hypothetical protein | - |
| CS032_RS00765 () | 102014..102916 | - | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| CS032_RS00780 () | 103335..103583 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| CS032_RS00785 () | 103580..104017 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CS032_RS00790 () | 104017..105288 | + | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| CS032_RS00795 () | 105492..106119 | + | 628 | Protein_127 | Chromosome-partitioning ATPase Soj | VF |
| CS032_RS27635 () | 106116..106418 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| CS032_RS00810 () | 106969..107343 | - | 375 | Protein_129 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|