MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 92392 bp
Accession: NZ_CP024167 Location: 1..92392 Organism: Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 Replicon: plasmid pCFSAN024441_02
Accession: NZ_CP024167 Location: 1..92392 Organism: Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 Replicon: plasmid pCFSAN024441_02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS348_RS25440 () | 1023..1634 | - | 612 | WP_023230044.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CS348_RS25445 () | 1645..2640 | - | 996 | WP_085398004.1 | conjugal transfer pilus assembly protein TraU | - |
| CS348_RS25450 () | 2637..2960 | - | 324 | WP_023229900.1 | hypothetical protein | - |
| CS348_RS25455 () | 3013..3234 | - | 222 | WP_023229901.1 | hypothetical protein | - |
| CS348_RS25460 () | 3251..3610 | - | 360 | WP_023229902.1 | hypothetical protein | - |
| CS348_RS25465 () | 3588..4226 | - | 639 | WP_024160262.1 | type-F conjugative transfer system protein TraW | - |
| CS348_RS25470 () | 4238..4654 | - | 417 | WP_023229904.1 | type-F conjugative transfer system protein TrbI | - |
| CS348_RS25475 () | 4651..7254 | - | 2604 | WP_023229905.1 | type IV secretion system protein TraC | - |
| CS348_RS25480 () | 7251..7808 | - | 558 | WP_099596446.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CS348_RS25485 () | 7908..9317 | - | 1410 | WP_099596447.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| CS348_RS25490 () | 9314..10054 | - | 741 | WP_023229908.1 | type-F conjugative transfer system secretin TraK | - |
| CS348_RS25495 () | 10066..10650 | - | 585 | WP_085398001.1 | conjugal transfer protein TraE | - |
| CS348_RS25500 () | 10655..10957 | - | 303 | WP_024160264.1 | type IV conjugative transfer system protein TraL | - |
| CS348_RS25505 () | 10963..11316 | - | 354 | WP_085398012.1 | conjugal transfer protein TraA | - |
| CS348_RS25510 () | 11513..12154 | + | 642 | WP_023229518.1 | Arc family DNA-binding protein | - |
| CS348_RS25515 () | 12187..12579 | - | 393 | WP_023229517.1 | hypothetical protein | - |
| CS348_RS25520 () | 13224..13754 | + | 531 | WP_085398000.1 | lytic transglycosylase domain-containing protein | - |
| CS348_RS25525 () | 13852..14675 | - | 824 | Protein_18 | DUF945 domain-containing protein | - |
| CS348_RS25530 () | 14760..15068 | - | 309 | WP_023230670.1 | hypothetical protein | - |
| CS348_RS25540 () | 15569..15850 | + | 282 | WP_157763944.1 | hypothetical protein | - |
| CS348_RS25545 () | 16059..16217 | - | 159 | WP_023230674.1 | type I toxin-antitoxin system Hok family toxin | - |
| CS348_RS25550 () | 16396..17118 | - | 723 | WP_023230675.1 | plasmid SOS inhibition protein A | - |
| CS348_RS25555 () | 17115..17516 | - | 402 | WP_023230676.1 | plasmid SOS inhibition protein B | - |
| CS348_RS25560 () | 17553..19628 | - | 2076 | WP_023230677.1 | ParB N-terminal domain-containing protein | - |
| CS348_RS25565 () | 19704..19931 | - | 228 | WP_023230678.1 | DUF905 domain-containing protein | - |
| CS348_RS25570 () | 19981..20505 | - | 525 | WP_023230679.1 | single-stranded DNA-binding protein | - |
| CS348_RS26235 () | 20898..21362 | - | 465 | WP_023230680.1 | hypothetical protein | - |
| CS348_RS25580 () | 21359..21889 | - | 531 | WP_023230681.1 | class I SAM-dependent methyltransferase | - |
| CS348_RS25585 () | 21963..22658 | - | 696 | WP_085398067.1 | IS6 family transposase | - |
| CS348_RS25590 () | 23055..23996 | + | 942 | WP_023229215.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| CS348_RS26430 () | 23993..24300 | - | 308 | Protein_31 | hypothetical protein | - |
| CS348_RS26435 () | 24292..24741 | - | 450 | Protein_32 | DNA-binding protein | - |
| CS348_RS25600 () | 24995..25483 | + | 489 | WP_085398051.1 | cytoplasmic protein | - |
| CS348_RS25605 () | 25606..26274 | - | 669 | WP_099596450.1 | conjugal transfer protein TraX | - |
| CS348_RS25615 () | 26708..27133 | - | 426 | WP_130559608.1 | DUF2913 family protein | - |
| CS348_RS26240 () | 27238..27408 | - | 171 | WP_139815156.1 | Exc2 family lipoprotein | - |
| CS348_RS25620 () | 27372..28094 | - | 723 | WP_024160213.1 | DUF1281 domain-containing protein | - |
| CS348_RS25630 () | 28520..28843 | - | 324 | WP_024160212.1 | hypothetical protein | - |
| CS348_RS25635 () | 28924..29568 | - | 645 | WP_023229415.1 | mediator of plasmid stability | - |
| CS348_RS25640 () | 29571..30539 | - | 969 | WP_024160211.1 | plasmid segregation protein parM | - |
| CS348_RS25645 () | 30842..31270 | + | 429 | WP_023229413.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CS348_RS25650 () | 31270..32541 | + | 1272 | WP_023229412.1 | Y-family DNA polymerase | - |
| CS348_RS25655 () | 32756..33094 | - | 339 | WP_024136783.1 | hypothetical protein | - |
| CS348_RS25660 () | 33186..33827 | - | 642 | WP_000511282.1 | ParA family protein | - |
| CS348_RS25665 () | 34365..35228 | + | 864 | WP_085398053.1 | RepB family plasmid replication initiator protein | - |
| CS348_RS25670 () | 35462..36244 | - | 783 | WP_023229695.1 | site-specific integrase | - |
| CS348_RS25675 () | 36257..36792 | - | 536 | Protein_47 | cytoplasmic protein | - |
| CS348_RS25680 () | 36789..37079 | - | 291 | WP_001266178.1 | hypothetical protein | - |
| CS348_RS25685 () | 37081..37386 | - | 306 | WP_001159874.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CS348_RS25690 () | 37388..37606 | - | 219 | WP_000813642.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CS348_RS25695 () | 38317..38562 | + | 246 | WP_000368362.1 | hypothetical protein | - |
| CS348_RS25700 () | 38567..39529 | + | 963 | WP_023229666.1 | hypothetical protein | - |
| CS348_RS25705 () | 39563..39907 | + | 345 | WP_023229667.1 | hypothetical protein | - |
| CS348_RS25710 () | 39931..40714 | - | 784 | Protein_54 | hypothetical protein | - |
| CS348_RS26245 () | 40956..41133 | - | 178 | Protein_55 | Tn3 family transposase | - |
| CS348_RS25715 () | 41197..41526 | + | 330 | Protein_56 | 5'-nucleotidase, lipoprotein e(P4) family | - |
| CS348_RS25720 () | 42284..42952 | + | 669 | WP_157763945.1 | helix-turn-helix domain-containing protein | - |
| CS348_RS25725 () | 43145..44548 | + | 1404 | WP_024160220.1 | serralysin family metalloprotease | - |
| CS348_RS25730 () | 44643..44960 | + | 318 | WP_095472368.1 | AprI/Inh family metalloprotease inhibitor | - |
| CS348_RS25735 () | 45101..46834 | + | 1734 | WP_085398027.1 | type I secretion system permease/ATPase | - |
| CS348_RS25740 () | 46900..48222 | + | 1323 | WP_085398026.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| CS348_RS25745 () | 48274..49596 | + | 1323 | WP_099596453.1 | TolC family outer membrane protein | - |
| CS348_RS25750 () | 49768..50808 | - | 1041 | WP_085398024.1 | IS481 family transposase | - |
| CS348_RS25755 () | 51174..51677 | - | 504 | WP_085398023.1 | putative Ig domain-containing protein | - |
| CS348_RS25760 () | 51817..52485 | + | 669 | WP_024160297.1 | epoxyqueuosine reductase QueH | - |
| CS348_RS25770 () | 52593..53647 | + | 1055 | Protein_66 | IS3 family transposase | - |
| CS348_RS25775 () | 53587..54600 | + | 1014 | WP_085398022.1 | iron-dicitrate ABC transporter permease FecC | - |
| CS348_RS25780 () | 54597..55552 | + | 956 | Protein_68 | Fe(3+) dicitrate ABC transporter permease subunit FecD | - |
| CS348_RS25785 () | 55553..56320 | + | 768 | WP_085398021.1 | Fe(3+) dicitrate ABC transporter ATP-binding protein FecE | - |
| CS348_RS25790 () | 56726..57370 | + | 645 | Protein_70 | IS3 family transposase | - |
| CS348_RS25795 () | 57449..57682 | - | 234 | WP_023229595.1 | hypothetical protein | - |
| CS348_RS25800 () | 57723..58368 | - | 646 | Protein_72 | chromosome partitioning protein | - |
| CS348_RS25805 () | 58486..59268 | - | 783 | WP_085398020.1 | sprT domain-containing protein | - |
| CS348_RS25810 () | 59646..59927 | - | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| CS348_RS25815 () | 59908..60237 | - | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CS348_RS25820 () | 60385..60954 | - | 570 | WP_009309977.1 | hypothetical protein | - |
| CS348_RS25830 () | 61677..62003 | + | 327 | Protein_77 | Tn3 family transposase | - |
| CS348_RS25835 () | 62020..62961 | - | 942 | WP_023229282.1 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | - |
| CS348_RS25840 () | 63113..64036 | - | 924 | WP_095472392.1 | VirK/YbjX family protein | - |
| CS348_RS25845 () | 64074..65162 | - | 1089 | WP_085398029.1 | glycosyltransferase family 4 protein | - |
| CS348_RS25850 () | 65172..65992 | - | 821 | Protein_81 | polysaccharide deacetylase family protein | - |
| CS348_RS25860 () | 67034..67492 | + | 459 | WP_085398017.1 | IS200/IS605 family transposase | - |
| CS348_RS25870 () | 67617..68657 | - | 1041 | WP_023229923.1 | IS481 family transposase | - |
| CS348_RS25875 () | 68758..68985 | - | 228 | Protein_84 | N-acetyltransferase | - |
| CS348_RS25885 () | 69451..70815 | - | 1365 | WP_085398016.1 | hypothetical protein | - |
| CS348_RS25890 () | 71150..71686 | - | 537 | WP_023229441.1 | hypothetical protein | - |
| CS348_RS25895 () | 72527..73408 | - | 882 | WP_023229442.1 | incFII family plasmid replication initiator RepA | - |
| CS348_RS25900 () | 73401..73478 | - | 78 | WP_085398014.1 | RepA leader peptide Tap | - |
| CS348_RS25905 () | 73717..73971 | - | 255 | WP_023229443.1 | replication regulatory protein RepA | - |
| CS348_RS25910 () | 74103..74657 | - | 555 | WP_023229444.1 | phospholipase D family protein | - |
| CS348_RS25920 () | 74810..80206 | - | 5397 | WP_099596452.1 | conjugative transfer relaxase/helicase TraI | - |
| CS348_RS25925 () | 80203..82775 | - | 2573 | Protein_92 | type IV conjugative transfer system coupling protein TraD | - |
| CS348_RS25930 () | 82986..83234 | + | 249 | WP_024160231.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| CS348_RS25935 () | 83231..83542 | + | 312 | WP_085398009.1 | CcdB family protein | - |
| CS348_RS25940 () | 83549..84280 | - | 732 | WP_023230685.1 | complement resistance protein TraT | - |
| CS348_RS25945 () | 84428..85141 | - | 714 | WP_085398008.1 | hypothetical protein | - |
| CS348_RS25950 () | 85150..88425 | - | 3276 | WP_024160195.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CS348_RS25955 () | 88425..89789 | - | 1365 | WP_085398007.1 | conjugal transfer protein TraH | - |
| CS348_RS25960 () | 89782..90051 | - | 270 | WP_023230038.1 | hypothetical protein | - |
| CS348_RS25965 () | 90068..90667 | - | 600 | WP_023230039.1 | F-type conjugal transfer protein TrbB | - |
| CS348_RS25970 () | 90775..91556 | - | 782 | Protein_101 | type-F conjugative transfer system pilin assembly protein TraF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|