MGE detailed information
MGE type: Conjugative plasmid MGE length: 88736 bp
Accession: NZ_CP024157 Location: 1..88736 Organism: Escherichia coli strain 14EC047 Replicon: plasmid p14EC047b
Accession: NZ_CP024157 Location: 1..88736 Organism: Escherichia coli strain 14EC047 Replicon: plasmid p14EC047b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR540_RS25925 (124) | 124..507 | + | 384 | WP_112350463.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| CR540_RS25930 (694) | 694..1383 | + | 690 | WP_000283380.1 | conjugal transfer transcriptional regulator TraJ | - |
| CR540_RS25935 (1487) | 1487..1888 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| CR540_RS25940 (1921) | 1921..2283 | + | 363 | WP_134894991.1 | type IV conjugative transfer system pilin TraA | - |
| CR540_RS25945 (2288) | 2288..2599 | + | 312 | WP_000012101.1 | type IV conjugative transfer system protein TraL | - |
| CR540_RS25950 (2621) | 2621..3187 | + | 567 | WP_000399793.1 | type IV conjugative transfer system protein TraE | - |
| CR540_RS25955 (3174) | 3174..3902 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| CR540_RS25960 (3902) | 3902..5329 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| CR540_RS25965 (5319) | 5319..5909 | + | 591 | WP_134895003.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| CR540_RS25970 (5896) | 5896..6213 | + | 318 | WP_001057308.1 | conjugal transfer protein TrbD | - |
| CR540_RS25975 (6213) | 6213..6728 | + | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CR540_RS25980 (6863) | 6863..7084 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| CR540_RS25985 (7244) | 7244..9871 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| CR540_RS25990 (9868) | 9868..10254 | + | 387 | WP_000214096.1 | type-F conjugative transfer system protein TrbI | - |
| CR540_RS25995 (10251) | 10251..10883 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| CR540_RS26000 (10880) | 10880..11872 | + | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| CR540_RS26005 (11881) | 11881..12519 | + | 639 | WP_134895004.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CR540_RS26010 (12516) | 12516..14366 | + | 1851 | WP_134894992.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CR540_RS26015 (14393) | 14393..14653 | + | 261 | WP_000864323.1 | conjugal transfer protein TrbE | - |
| CR540_RS26020 (14646) | 14646..15389 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CR540_RS26025 (15550) | 15550..15786 | + | 237 | WP_000270010.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CR540_RS26030 (15773) | 15773..16318 | + | 546 | WP_000059818.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CR540_RS26035 (16248) | 16248..16610 | + | 363 | WP_134894993.1 | P-type conjugative transfer protein TrbJ | - |
| CR540_RS26040 (16610) | 16610..17983 | + | 1374 | WP_156841533.1 | conjugal transfer pilus assembly protein TraH | - |
| CR540_RS26045 (17980) | 17980..20802 | + | 2823 | WP_062873754.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| CR540_RS26050 (20817) | 20817..21320 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| CR540_RS26055 (21352) | 21352..22083 | + | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| CR540_RS26060 (22335) | 22335..24527 | + | 2193 | Protein_27 | type IV conjugative transfer system coupling protein TraD | - |
| CR540_RS26065 (24527) | 24527..29797 | + | 5271 | WP_134894994.1 | Multifunctional conjugation protein TraI | Relaxase |
| CR540_RS26070 (29817) | 29817..30563 | + | 747 | WP_021534916.1 | conjugal transfer pilus acetylase TraX | - |
| CR540_RS26075 (30618) | 30618..31178 | + | 561 | WP_000840464.1 | fertility inhibition protein FinO | - |
| CR540_RS26080 (31271) | 31271..31968 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| CR540_RS26085 (31955) | 31955..32104 | + | 150 | Protein_32 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| CR540_RS26090 (32143) | 32143..32733 | + | 591 | WP_063101963.1 | DUF2726 domain-containing protein | - |
| CR540_RS26095 (32973) | 32973..33227 | + | 255 | WP_134894995.1 | replication regulatory protein RepA | - |
| CR540_RS26105 (33464) | 33464..33538 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CR540_RS26110 (33531) | 33531..34388 | + | 858 | WP_042634321.1 | incFII family plasmid replication initiator RepA | - |
| CR540_RS26120 (35328) | 35328..35981 | + | 654 | WP_000616800.1 | type II CAAX endopeptidase family protein | - |
| CR540_RS26125 (36074) | 36074..36331 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CR540_RS26130 (36264) | 36264..36665 | + | 402 | WP_167586637.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CR540_RS27925 (37095) | 37095..37541 | + | 447 | WP_249929352.1 | DUF262 domain-containing protein | - |
| CR540_RS27930 (37674) | 37674..38723 | + | 1050 | WP_223196911.1 | putative DNA binding domain-containing protein | - |
| CR540_RS26145 (39350) | 39350..40053 | + | 704 | Protein_42 | IS6 family transposase IS15DII | Transposase |
| CR540_RS26150 (40108) | 40108..40365 | + | 258 | Protein_43 | hypothetical protein | - |
| CR540_RS26155 (40511) | 40511..41374 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| CR540_RS26160 (41412) | 41412..41657 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| CR540_RS26165 (42126) | 42126..42917 | + | 792 | WP_000034420.1 | Dihydropteroate synthase | ARG |
| CR540_RS27360 (42920) | 42920..43195 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| CR540_RS26170 (43218) | 43218..43850 | + | 633 | WP_020802982.1 | IS256 family transposase IS406 | Transposase |
| CR540_RS26180 (44097) | 44097..44429 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| CR540_RS26185 (44552) | 44552..45390 | - | 839 | Protein_50 | Streptomycin 3''-adenylyltransferase | ARG |
| CR540_RS26190 (45483) | 45483..46742 | - | 1260 | WP_000095725.1 | Bicyclomycin resistance protein | ARG |
| CR540_RS26195 (46957) | 46957..47795 | - | 839 | Protein_52 | Streptomycin 3''-adenylyltransferase | ARG |
| CR540_RS26200 (47801) | 47801..48091 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| CR540_RS26205 (48203) | 48203..48700 | - | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| CR540_RS26210 (48845) | 48845..49858 | + | 1014 | WP_000845054.1 | IS91 family transposase ISAzo26 | Transposase |
| CR540_RS26220 (50061) | 50061..50411 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| CR540_RS26225 (50587) | 50587..51147 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| CR540_RS26230 (51151) | 51151..54117 | + | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| CR540_RS26235 (54175) | 54175..54417 | + | 243 | WP_000844627.1 | transposase | - |
| CR540_RS26240 (54449) | 54449..55075 | - | 627 | WP_031606906.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| CR540_RS26245 (55181) | 55181..56380 | + | 1200 | WP_063097389.1 | Tetracycline resistance protein, class C | ARG |
| CR540_RS26250 (56347) | 56347..56535 | - | 189 | Protein_62 | IS91 family transposase | - |
| CR540_RS26255 (56647) | 56647..56952 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| CR540_RS26260 (56980) | 56980..58194 | - | 1215 | WP_000214122.1 | Bicyclomycin resistance protein | ARG |
| CR540_RS26265 (58411) | 58411..59295 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| CR540_RS26270 (59326) | 59326..60819 | - | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| CR540_RS26275 (61030) | 61030..61254 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| CR540_RS26280 (61251) | 61251..61988 | - | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CR540_RS27370 (62474) | 62474..62614 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| CR540_RS26290 (62620) | 62620..63324 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CR540_RS26295 (63361) | 63361..63603 | - | 243 | WP_225288543.1 | hypothetical protein | - |
| CR540_RS26305 (64162) | 64162..64380 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CR540_RS26310 (64382) | 64382..64687 | + | 306 | WP_134894997.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CR540_RS26315 (64688) | 64688..65496 | + | 809 | Protein_74 | site-specific integrase | - |
| CR540_RS26320 (65634) | 65634..65909 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| CR540_RS26325 (65903) | 65903..66547 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| CR540_RS26330 (66776) | 66776..67746 | + | 971 | Protein_77 | plasmid segregation protein ParM | - |
| CR540_RS26335 (67751) | 67751..68143 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| CR540_RS26340 (68148) | 68148..69417 | - | 1270 | Protein_79 | Y-family DNA polymerase | - |
| CR540_RS26345 (69417) | 69417..69854 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CR540_RS26350 (69851) | 69851..70099 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| CR540_RS27935 (70520) | 70520..71421 | + | 902 | Protein_82 | DUF1281 domain-containing protein | - |
| CR540_RS26365 (71425) | 71425..71730 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| CR540_RS26370 (71808) | 71808..72491 | + | 684 | WP_000085940.1 | DNA methylase | - |
| CR540_RS26375 (72492) | 72492..72713 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| CR540_RS26380 (72694) | 72694..73161 | + | 468 | WP_236323724.1 | DUF1380 family protein | - |
| CR540_RS26385 (73211) | 73211..73981 | + | 771 | WP_134894998.1 | hypothetical protein | - |
| CR540_RS26390 (74171) | 74171..75280 | - | 1110 | Protein_88 | IS4-like element IS421 family transposase | - |
| CR540_RS26400 (75741) | 75741..76166 | + | 426 | WP_052898751.1 | antirestriction protein | - |
| CR540_RS26405 (76213) | 76213..76635 | + | 423 | WP_001613000.1 | DUF1380 family protein | - |
| CR540_RS26410 (76632) | 76632..76823 | + | 192 | WP_062873855.1 | hypothetical protein | - |
| CR540_RS27940 (77019) | 77019..77246 | + | 228 | WP_071776744.1 | hypothetical protein | - |
| CR540_RS26425 (77864) | 77864..78095 | + | 232 | Protein_93 | hypothetical protein | - |
| CR540_RS26430 (78147) | 78147..79508 | + | 1362 | WP_063078170.1 | DUF3560 domain-containing protein | - |
| CR540_RS26435 (79555) | 79555..80118 | + | 564 | WP_080077774.1 | class I SAM-dependent methyltransferase | - |
| CR540_RS27945 (80118) | 80118..80369 | + | 252 | Protein_96 | hypothetical protein | - |
| CR540_RS26440 (80384) | 80384..80635 | + | 252 | WP_134894999.1 | hypothetical protein | - |
| CR540_RS26460 (81011) | 81011..81541 | + | 531 | WP_032214168.1 | single-stranded DNA-binding protein | - |
| CR540_RS26465 (81597) | 81597..81833 | + | 237 | WP_134895001.1 | DUF905 domain-containing protein | - |
| CR540_RS26470 (81891) | 81891..83849 | + | 1959 | WP_134895002.1 | ParB/RepB/Spo0J family partition protein | - |
| CR540_RS26475 (83904) | 83904..84338 | + | 435 | WP_042634413.1 | conjugation system SOS inhibitor PsiB | - |
| CR540_RS26480 (84335) | 84335..85121 | + | 787 | Protein_102 | plasmid SOS inhibition protein A | - |
| - (85066) | 85066..85289 | + | 224 | NuclAT_0 | - | - |
| - (85066) | 85066..85289 | + | 224 | NuclAT_0 | - | - |
| - (85066) | 85066..85289 | + | 224 | NuclAT_0 | - | - |
| - (85066) | 85066..85289 | + | 224 | NuclAT_0 | - | - |
| CR540_RS26485 (85275) | 85275..85424 | + | 150 | Protein_103 | plasmid maintenance protein Mok | - |
| CR540_RS27950 (85366) | 85366..85491 | + | 126 | Protein_104 | type I toxin-antitoxin system Hok family toxin | - |
| CR540_RS26490 (85710) | 85710..85994 | + | 285 | WP_249929353.1 | hypothetical protein | - |
| CR540_RS27955 (85950) | 85950..86111 | - | 162 | Protein_106 | hypothetical protein | - |
| CR540_RS27960 (86181) | 86181..86387 | + | 207 | WP_249929351.1 | single-stranded DNA-binding protein | - |
| CR540_RS26500 (86412) | 86412..86699 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| CR540_RS26505 (86819) | 86819..87640 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| CR540_RS26510 (87937) | 87937..88539 | - | 603 | WP_000243703.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|