MGE detailed information
MGE type: Prophage MGE length: 51046 bp
Accession: NZ_CP024155 Location: 2545022..2596067 Organism: Escherichia coli strain 14EC047 Replicon: chromosome
Accession: NZ_CP024155 Location: 2545022..2596067 Organism: Escherichia coli strain 14EC047 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR540_RS12820 (2540461) | 2540461..2541147 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| CR540_RS12825 (2541244) | 2541244..2542353 | + | 1110 | Protein_2471 | IS4-like element IS421 family transposase | - |
| CR540_RS12835 (2542670) | 2542670..2542873 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CR540_RS12840 (2542909) | 2542909..2544369 | - | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| CR540_RS12845 (2544458) | 2544458..2545741 | - | 1284 | Protein_2474 | MHS family MFS transporter YdfJ | - |
| CR540_RS12855 (2546344) | 2546344..2546457 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| CR540_RS12860 (2546539) | 2546539..2546772 | + | 234 | WP_000836772.1 | cold shock protein YdfK | - |
| CR540_RS12865 (2547089) | 2547089..2547679 | + | 591 | WP_000086519.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CR540_RS12870 (2547777) | 2547777..2548352 | - | 576 | WP_000885601.1 | tail fiber assembly protein | - |
| CR540_RS12875 (2548352) | 2548352..2551507 | - | 3156 | WP_134894891.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CR540_RS12880 (2551572) | 2551572..2552171 | - | 600 | WP_134894892.1 | Outer membrane protein X | VF |
| CR540_RS12885 (2552239) | 2552239..2555718 | - | 3480 | WP_134894893.1 | host specificity protein J | - |
| CR540_RS12890 (2555779) | 2555779..2556381 | - | 603 | WP_000090905.1 | tail assembly protein | - |
| CR540_RS12895 (2556318) | 2556318..2557060 | - | 743 | Protein_2483 | C40 family peptidase | - |
| CR540_RS12900 (2557066) | 2557066..2557764 | - | 699 | WP_001152612.1 | phage minor tail protein L | - |
| CR540_RS27685 (2557764) | 2557764..2557880 | - | 117 | WP_072108173.1 | phage tail protein | - |
| CR540_RS12905 (2557847) | 2557847..2558092 | - | 246 | WP_249929323.1 | phage tail protein | - |
| CR540_RS12910 (2558089) | 2558089..2560668 | - | 2580 | WP_101979691.1 | phage tail tape measure protein | - |
| CR540_RS12915 (2560661) | 2560661..2561095 | - | 435 | WP_000459480.1 | phage tail assembly protein T | - |
| CR540_RS12920 (2561077) | 2561077..2561499 | - | 423 | WP_033803353.1 | phage minor tail protein G | - |
| CR540_RS12925 (2561515) | 2561515..2562255 | - | 741 | WP_001439072.1 | phage tail protein | - |
| CR540_RS12930 (2562263) | 2562263..2562658 | - | 396 | WP_000683143.1 | phage minor tail U family protein | - |
| CR540_RS12935 (2562655) | 2562655..2563232 | - | 578 | Protein_2492 | phage tail protein | - |
| CR540_RS12940 (2563244) | 2563244..2563597 | - | 354 | WP_000752960.1 | head-tail joining protein | - |
| CR540_RS12945 (2563609) | 2563609..2564004 | - | 396 | WP_000158895.1 | DNA-packaging protein FI | - |
| CR540_RS12950 (2564046) | 2564046..2565071 | - | 1026 | WP_001552792.1 | major capsid protein | - |
| CR540_RS12955 (2565127) | 2565127..2565459 | - | 333 | WP_001549228.1 | head decoration protein | - |
| CR540_RS12960 (2565469) | 2565469..2566788 | - | 1320 | WP_000123333.1 | S49 family peptidase | - |
| CR540_RS12965 (2566769) | 2566769..2568370 | - | 1602 | WP_001356819.1 | phage portal protein | - |
| CR540_RS12970 (2568367) | 2568367..2568573 | - | 207 | WP_000198149.1 | gpW family protein | - |
| CR540_RS12975 (2568570) | 2568570..2570495 | - | 1926 | WP_001027258.1 | phage terminase large subunit family protein | - |
| CR540_RS12980 (2570470) | 2570470..2571015 | - | 546 | WP_000453600.1 | DNA-packaging protein | - |
| CR540_RS12990 (2571404) | 2571404..2571637 | + | 234 | WP_000105084.1 | YlcI/YnfO family protein | - |
| CR540_RS12995 (2571694) | 2571694..2572104 | + | 411 | WP_134894894.1 | DUF1398 domain-containing protein | - |
| CR540_RS13000 (2572256) | 2572256..2572435 | - | 180 | WP_053902974.1 | addiction module toxin, GnsA/GnsB family | - |
| CR540_RS13005 (2572607) | 2572607..2572837 | - | 231 | WP_283936550.1 | protein YnfN | - |
| CR540_RS27690 (2572869) | 2572869..2572907 | - | 39 | Protein_2506 | hypothetical protein | - |
| CR540_RS13010 (2572910) | 2572910..2573098 | - | 189 | WP_071526745.1 | cold-shock protein | - |
| CR540_RS13015 (2573109) | 2573109..2573321 | - | 213 | WP_001356335.1 | cold shock protein CspI | - |
| CR540_RS13020 (2573685) | 2573685..2574182 | - | 498 | WP_134894895.1 | DUF2514 domain-containing protein | - |
| CR540_RS13025 (2574179) | 2574179..2574712 | - | 534 | WP_001092966.1 | lysozyme | - |
| CR540_RS13030 (2574709) | 2574709..2575020 | - | 312 | WP_000189918.1 | DUF1327 domain-containing protein | - |
| CR540_RS13035 (2575025) | 2575025..2575240 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CR540_RS27695 (2575460) | 2575460..2575630 | + | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| CR540_RS13040 (2575993) | 2575993..2576208 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CR540_RS13045 (2576509) | 2576509..2576721 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CR540_RS13050 (2576776) | 2576776..2576865 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| CR540_RS13055 (2577143) | 2577143..2577895 | - | 753 | WP_001047136.1 | antitermination protein | - |
| CR540_RS13060 (2577909) | 2577909..2578958 | - | 1050 | WP_096174476.1 | DUF968 domain-containing protein | - |
| CR540_RS13065 (2578960) | 2578960..2579238 | - | 279 | WP_134894896.1 | hypothetical protein | - |
| CR540_RS13070 (2579305) | 2579305..2579556 | - | 252 | WP_000980993.1 | protein Rem | - |
| CR540_RS13075 (2579773) | 2579773..2579928 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CR540_RS13080 (2580000) | 2580000..2580287 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CR540_RS13085 (2580287) | 2580287..2580526 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CR540_RS13090 (2580551) | 2580551..2580856 | + | 306 | WP_001326990.1 | protein YdfV | - |
| CR540_RS13095 (2581059) | 2581059..2581390 | + | 332 | Protein_2525 | FlxA-like family protein | - |
| CR540_RS27700 (2581826) | 2581826..2581975 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| CR540_RS13100 (2582048) | 2582048..2583118 | - | 1071 | Protein_2527 | ISNCY family transposase ISCARN112 | Transposase |
| CR540_RS27705 (2583908) | 2583908..2584195 | - | 288 | Protein_2528 | hypothetical protein | - |
| CR540_RS13115 (2584509) | 2584509..2584889 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| CR540_RS13120 (2584886) | 2584886..2585233 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| CR540_RS13125 (2585283) | 2585283..2586821 | + | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| CR540_RS13130 (2587123) | 2587123..2587612 | - | 490 | Protein_2532 | class I SAM-dependent methyltransferase | - |
| CR540_RS13135 (2587609) | 2587609..2588031 | - | 423 | WP_134894898.1 | DUF977 family protein | - |
| CR540_RS13140 (2588072) | 2588072..2589037 | - | 966 | WP_001613119.1 | phage replication protein O | - |
| CR540_RS13145 (2589018) | 2589018..2589539 | - | 522 | WP_096896878.1 | toxin YdaT family protein | - |
| CR540_RS13150 (2589523) | 2589523..2589753 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| CR540_RS13155 (2589837) | 2589837..2590243 | + | 407 | Protein_2537 | DNA-binding transcriptional dual regulator DicA | - |
| CR540_RS13160 (2590410) | 2590410..2590565 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| CR540_RS28055 (2590567) | 2590567..2590695 | + | 129 | WP_000344964.1 | protein YdfB | - |
| CR540_RS13165 (2590725) | 2590725..2590943 | + | 219 | WP_001171946.1 | protein YdfC | - |
| CR540_RS13175 (2591487) | 2591487..2591675 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CR540_RS13180 (2591672) | 2591672..2591863 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| CR540_RS13185 (2591957) | 2591957..2594428 | + | 2472 | WP_032151738.1 | exonuclease | - |
| CR540_RS13190 (2594501) | 2594501..2594752 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| CR540_RS13195 (2594787) | 2594787..2596067 | + | 1281 | WP_001696243.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CR540_RS13205 (2596255) | 2596255..2597274 | - | 1020 | WP_000836064.1 | Zn-dependent oxidoreductase | - |
| CR540_RS13210 (2597286) | 2597286..2598500 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CR540_RS13215 (2598706) | 2598706..2599032 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| CR540_RS13220 (2599167) | 2599167..2599508 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| CR540_RS13225 (2599543) | 2599543..2600103 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| CR540_RS13230 (2600106) | 2600106..2600816 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|