MGE detailed information
MGE type: Prophage MGE length: 62501 bp
Accession: NZ_CP024141 Location: 2387031..2449531 Organism: Escherichia coli strain 14EC029 Replicon: chromosome
Accession: NZ_CP024141 Location: 2387031..2449531 Organism: Escherichia coli strain 14EC029 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR538_RS12505 () | 2382930..2384150 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| CR538_RS12510 () | 2384275..2384970 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| CR538_RS12515 () | 2384923..2386215 | - | 1293 | WP_071586481.1 | voltage-gated ClC-type chloride channel ClcB | - |
| CR538_RS12520 () | 2386374..2386988 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| CR538_RS12525 () | 2387031..2387885 | - | 855 | WP_000526490.1 | dimethyl sulfoxide reductase anchor subunit | - |
| CR538_RS12530 () | 2387887..2388504 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CR538_RS12535 () | 2388515..2390938 | - | 2424 | WP_074156494.1 | dimethyl sulfoxide reductase subunit A | - |
| CR538_RS12540 () | 2390999..2393425 | - | 2427 | WP_000041558.1 | dimethyl sulfoxide reductase subunit A | - |
| CR538_RS12545 () | 2393624..2393929 | - | 306 | WP_001307224.1 | DUF1161 domain-containing protein | - |
| CR538_RS12550 () | 2394037..2394747 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CR538_RS12555 () | 2394750..2395310 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CR538_RS12560 () | 2395345..2395686 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| CR538_RS12565 () | 2395821..2396147 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| CR538_RS12575 () | 2396353..2397567 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CR538_RS12580 () | 2397579..2398598 | + | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| CR538_RS12590 () | 2398786..2400066 | - | 1281 | WP_158298096.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CR538_RS12595 () | 2400101..2400352 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| CR538_RS12600 () | 2400425..2402896 | - | 2472 | WP_000048342.1 | exonuclease | - |
| CR538_RS12605 () | 2402989..2403180 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| CR538_RS12610 () | 2403177..2403365 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CR538_RS12620 () | 2403933..2404151 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| CR538_RS12630 () | 2404311..2404466 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| CR538_RS12635 () | 2404633..2405040 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| CR538_RS12640 () | 2405124..2405354 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| CR538_RS12645 () | 2405338..2405859 | + | 522 | WP_000705358.1 | hypothetical protein | - |
| CR538_RS12650 () | 2405840..2406805 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| CR538_RS12655 () | 2406846..2407268 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| CR538_RS12660 () | 2407265..2407621 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| CR538_RS29955 () | 2408232..2408519 | + | 288 | Protein_2309 | hypothetical protein | - |
| CR538_RS12675 () | 2409288..2410601 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| CR538_RS12685 () | 2411038..2411370 | - | 333 | WP_001301033.1 | protein FlxA | - |
| CR538_RS12690 () | 2411573..2411878 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| CR538_RS12695 () | 2411903..2412142 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CR538_RS12700 () | 2412142..2412429 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CR538_RS12705 () | 2412501..2412656 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CR538_RS12710 () | 2412873..2413124 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| CR538_RS12715 () | 2413191..2413469 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| CR538_RS12720 () | 2413471..2414520 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| CR538_RS12725 () | 2414534..2415286 | + | 753 | WP_001047135.1 | antitermination protein | - |
| CR538_RS29695 () | 2415564..2415653 | - | 90 | WP_158298097.1 | hypothetical protein | - |
| CR538_RS12730 () | 2415708..2415920 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CR538_RS12735 () | 2416221..2416436 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CR538_RS30235 () | 2416800..2416970 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| CR538_RS12740 () | 2417190..2417405 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CR538_RS12745 () | 2417410..2417721 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| CR538_RS12750 () | 2417718..2418251 | + | 534 | WP_001092971.1 | lysozyme | - |
| CR538_RS12755 () | 2418248..2418745 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| CR538_RS12765 () | 2419108..2419320 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CR538_RS12770 () | 2419331..2419519 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| CR538_RS29700 () | 2419522..2419587 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| CR538_RS29705 () | 2419667..2419822 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| CR538_RS12780 () | 2419994..2420167 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| CR538_RS12785 () | 2420319..2420729 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| CR538_RS12790 () | 2420787..2421020 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| CR538_RS12800 () | 2421409..2421954 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| CR538_RS12805 () | 2421929..2423854 | + | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| CR538_RS12810 () | 2423851..2424057 | + | 207 | WP_000198149.1 | gpW family protein | - |
| CR538_RS12815 () | 2424054..2425655 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| CR538_RS12820 () | 2425636..2426955 | + | 1320 | WP_000123242.1 | S49 family peptidase | - |
| CR538_RS12825 () | 2426965..2427297 | + | 333 | WP_001358225.1 | head decoration protein | - |
| CR538_RS12830 () | 2427353..2428378 | + | 1026 | WP_101968779.1 | major capsid protein | - |
| CR538_RS12835 () | 2428420..2428815 | + | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| CR538_RS12840 () | 2428827..2429180 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| CR538_RS12845 () | 2429192..2429770 | + | 579 | WP_000975081.1 | phage tail protein | - |
| CR538_RS12850 () | 2429767..2430162 | + | 396 | WP_000683129.1 | phage minor tail U family protein | - |
| CR538_RS12855 () | 2430170..2430910 | + | 741 | WP_001317730.1 | phage tail protein | - |
| CR538_RS12860 () | 2430926..2431348 | + | 423 | WP_000479193.1 | phage minor tail protein G | - |
| CR538_RS12865 () | 2431330..2431764 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| CR538_RS12870 () | 2431757..2434318 | + | 2562 | WP_053292699.1 | phage tail tape measure protein | - |
| CR538_RS12875 () | 2434315..2434644 | + | 330 | WP_000847351.1 | phage tail protein | - |
| CR538_RS12880 () | 2434644..2435342 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| CR538_RS12885 () | 2435348..2436091 | + | 744 | WP_001484131.1 | C40 family peptidase | - |
| CR538_RS12890 () | 2436028..2436630 | + | 603 | WP_000090849.1 | tail assembly protein | - |
| CR538_RS12895 () | 2436691..2440170 | + | 3480 | WP_021535035.1 | host specificity protein J | - |
| CR538_RS12900 () | 2440238..2440837 | + | 600 | WP_053292719.1 | Outer membrane protein X | VF |
| CR538_RS12905 () | 2440902..2443862 | + | 2961 | WP_089570685.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CR538_RS12910 () | 2443862..2444437 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| CR538_RS12915 () | 2444535..2445125 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CR538_RS12920 () | 2445442..2445675 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CR538_RS29710 () | 2445744..2445857 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| CR538_RS12930 () | 2446460..2447743 | + | 1284 | Protein_2361 | MHS family MFS transporter YdfJ | - |
| CR538_RS12935 () | 2447832..2449292 | + | 1461 | WP_000527758.1 | mannitol dehydrogenase family protein | - |
| CR538_RS12940 () | 2449328..2449531 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CR538_RS12945 () | 2449709..2450395 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| CR538_RS12950 () | 2450484..2451230 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| CR538_RS12960 () | 2451367..2453412 | + | 2046 | WP_001296767.1 | peptidyl-dipeptidase Dcp | - |
| CR538_RS12970 () | 2453457..2453975 | - | 519 | WP_001024561.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|