MGE detailed information
MGE type: Prophage MGE length: 56155 bp
Accession: NZ_CP024138 Location: 2421928..2478082 Organism: Escherichia coli strain 14EC020 Replicon: chromosome
Accession: NZ_CP024138 Location: 2421928..2478082 Organism: Escherichia coli strain 14EC020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR537_RS12440 () | 2418177..2420603 | - | 2427 | WP_000041658.1 | dimethyl sulfoxide reductase subunit A | - |
| CR537_RS12445 () | 2420802..2421107 | - | 306 | WP_001317855.1 | DUF1161 domain-containing protein | - |
| CR537_RS12450 () | 2421215..2421925 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| CR537_RS12455 () | 2421928..2422488 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| CR537_RS12460 () | 2422523..2422864 | - | 342 | WP_000705195.1 | DUF1283 family protein | - |
| CR537_RS12465 () | 2422999..2423325 | + | 327 | WP_001295395.1 | YnfA family protein | - |
| CR537_RS12475 () | 2423531..2424745 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CR537_RS12480 () | 2424757..2425776 | + | 1020 | WP_000836040.1 | Zn-dependent oxidoreductase | - |
| CR537_RS12490 () | 2425964..2427244 | - | 1281 | WP_000877006.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CR537_RS12495 () | 2427279..2427530 | - | 252 | WP_001695752.1 | excisionase family protein | - |
| CR537_RS12500 () | 2427603..2430074 | - | 2472 | WP_001695751.1 | exonuclease | - |
| CR537_RS12505 () | 2430168..2430359 | - | 192 | WP_001083273.1 | lysis protein YdfD | - |
| CR537_RS12510 () | 2430356..2430544 | - | 189 | WP_086525109.1 | cell division inhibition protein DicB | - |
| CR537_RS12515 () | 2430960..2431247 | + | 288 | WP_001328010.1 | hypothetical protein | - |
| CR537_RS12520 () | 2431216..2431593 | - | 378 | WP_001241299.1 | hypothetical protein | - |
| CR537_RS12525 () | 2431593..2431745 | - | 153 | WP_000379591.1 | DUF1391 family protein | - |
| CR537_RS12530 () | 2431914..2432321 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| CR537_RS12535 () | 2432402..2432629 | + | 228 | WP_000921596.1 | transcriptional regulator | - |
| CR537_RS12540 () | 2432613..2433134 | + | 522 | WP_000705360.1 | hypothetical protein | - |
| CR537_RS12545 () | 2433115..2434080 | + | 966 | WP_000054495.1 | hypothetical protein | - |
| CR537_RS12550 () | 2434121..2434522 | + | 402 | WP_001151252.1 | DUF977 family protein | - |
| CR537_RS12555 () | 2435056..2436081 | + | 1026 | WP_000547812.1 | RelA/SpoT domain-containing protein | - |
| - () | 2436746..2436804 | - | 59 | - | - | Antitoxin Detail |
| CR537_RS12565 () | 2436816..2436971 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| CR537_RS12570 () | 2437188..2437439 | + | 252 | WP_000980999.1 | hypothetical protein | - |
| CR537_RS12575 () | 2437506..2437784 | + | 279 | WP_032297225.1 | hypothetical protein | - |
| CR537_RS12580 () | 2437786..2438835 | + | 1050 | WP_001696469.1 | DUF968 domain-containing protein | - |
| CR537_RS12585 () | 2438849..2439601 | + | 753 | WP_001047132.1 | antitermination protein | - |
| CR537_RS12590 () | 2439776..2439978 | - | 203 | Protein_2302 | cold shock-like protein CspF | - |
| CR537_RS12595 () | 2440277..2440492 | + | 216 | WP_000066485.1 | cold shock-like protein CspB | - |
| CR537_RS27440 () | 2440856..2441026 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| CR537_RS12605 () | 2441246..2441461 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CR537_RS12610 () | 2441466..2441777 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| CR537_RS12615 () | 2441774..2442307 | + | 534 | WP_001092971.1 | lysozyme | - |
| CR537_RS12620 () | 2442304..2442801 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| CR537_RS12625 () | 2443165..2443377 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CR537_RS12630 () | 2443388..2443576 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| CR537_RS27045 () | 2443579..2443644 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| CR537_RS12635 () | 2443724..2443879 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| CR537_RS12640 () | 2444051..2444223 | + | 173 | Protein_2313 | addiction module toxin, GnsA/GnsB family | - |
| CR537_RS12645 () | 2444375..2444785 | - | 411 | WP_000035577.1 | DUF1398 domain-containing protein | - |
| CR537_RS12650 () | 2444986..2445192 | + | 207 | WP_001031431.1 | hypothetical protein | - |
| CR537_RS12660 () | 2445746..2446240 | + | 495 | WP_001696471.1 | DUF1441 family protein | - |
| CR537_RS12665 () | 2446240..2448342 | + | 2103 | WP_001696472.1 | phage terminase large subunit family protein | - |
| CR537_RS12670 () | 2448339..2448551 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| CR537_RS12675 () | 2448479..2450059 | + | 1581 | WP_023908451.1 | phage portal protein | - |
| CR537_RS12680 () | 2450004..2452031 | + | 2028 | WP_001360054.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| CR537_RS12685 () | 2452118..2452441 | + | 324 | WP_001097046.1 | DUF2190 family protein | - |
| CR537_RS12690 () | 2452434..2452709 | + | 276 | WP_025492009.1 | DNA breaking-rejoining protein | - |
| CR537_RS12695 () | 2452721..2453299 | + | 579 | WP_042003597.1 | phage tail protein | - |
| CR537_RS12700 () | 2453296..2453697 | + | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| CR537_RS12705 () | 2453709..2454452 | + | 744 | WP_000211109.1 | phage tail protein | - |
| CR537_RS12710 () | 2454513..2454899 | + | 387 | WP_001300035.1 | phage minor tail protein G | - |
| CR537_RS12715 () | 2454908..2455237 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| CR537_RS12720 () | 2455209..2458274 | + | 3066 | WP_025492007.1 | phage tail tape measure protein | - |
| CR537_RS12725 () | 2458274..2458603 | + | 330 | WP_000447253.1 | phage tail protein | - |
| CR537_RS12730 () | 2458613..2459311 | + | 699 | WP_001152382.1 | phage minor tail protein L | - |
| CR537_RS12735 () | 2459317..2460060 | + | 744 | WP_063116075.1 | C40 family peptidase | - |
| CR537_RS12740 () | 2459958..2460605 | + | 648 | WP_041498141.1 | tail assembly protein | - |
| CR537_RS12745 () | 2460666..2464079 | + | 3414 | WP_041498218.1 | host specificity protein J | - |
| CR537_RS12750 () | 2464149..2464748 | + | 600 | WP_041498219.1 | Outer membrane protein X | VF |
| CR537_RS12755 () | 2464813..2467773 | + | 2961 | WP_041498220.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CR537_RS12760 () | 2467773..2468375 | + | 603 | WP_041498222.1 | tail fiber assembly protein | - |
| CR537_RS12765 () | 2468446..2469036 | - | 591 | WP_000087133.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CR537_RS12770 () | 2469355..2469588 | - | 234 | WP_000836765.1 | cold shock protein YdfK | - |
| CR537_RS27050 () | 2469657..2469770 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| CR537_RS12780 () | 2470374..2471657 | + | 1284 | Protein_2340 | MHS family MFS transporter YdfJ | - |
| CR537_RS12785 () | 2471746..2473206 | + | 1461 | WP_000527790.1 | mannitol dehydrogenase family protein | - |
| CR537_RS12790 () | 2473242..2473445 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CR537_RS12795 () | 2473622..2474308 | - | 687 | WP_000215552.1 | DNA-binding transcriptional regulator YdfH | - |
| CR537_RS12800 () | 2474397..2475143 | - | 747 | WP_001317837.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| CR537_RS12810 () | 2475280..2477325 | + | 2046 | WP_001317836.1 | peptidyl-dipeptidase Dcp | - |
| CR537_RS12820 () | 2477690..2478082 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| CR537_RS12825 () | 2478337..2479227 | + | 891 | WP_000592798.1 | diguanylate cyclase DgcZ | - |
| CR537_RS27445 () | 2479342..2479446 | - | 105 | WP_212734532.1 | hypothetical protein | - |
| CR537_RS12830 () | 2479446..2479541 | - | 96 | WP_000901367.1 | protein MgtS | - |
| CR537_RS12835 () | 2479668..2480855 | - | 1188 | WP_001054178.1 | efflux MFS transporter YdeE | - |
| CR537_RS12840 () | 2481050..2481949 | + | 900 | WP_000087219.1 | O-acetylserine/cysteine exporter | - |
| CR537_RS12845 () | 2481980..2482198 | - | 219 | WP_000803533.1 | multiple antibiotic resistance protein MarB | - |
| CR537_RS12850 () | 2482230..2482613 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| CR537_RS12855 () | 2482634..2483068 | - | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|