MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 68885 bp
Accession: NZ_CP024126 Location: 1067457..1136341 Organism: Streptococcus suis strain HA0609 Replicon: chromosome
Accession: NZ_CP024126 Location: 1067457..1136341 Organism: Streptococcus suis strain HA0609 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR542_RS05480 () | 1063159..1063653 | - | 495 | WP_024383745.1 | PcfB family protein | - |
| CR542_RS05485 () | 1063646..1066240 | - | 2595 | WP_024406075.1 | G5 domain-containing protein | - |
| CR542_RS05490 () | 1066237..1067196 | - | 960 | WP_024383747.1 | hypothetical protein | - |
| CR542_RS05495 () | 1067457..1068662 | - | 1206 | WP_024409315.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CR542_RS05500 () | 1068665..1068913 | - | 249 | WP_029743105.1 | DUF3173 family protein | - |
| CR542_RS05505 () | 1069183..1069407 | - | 225 | WP_003108992.1 | helix-turn-helix domain-containing protein | - |
| CR542_RS05510 () | 1069654..1070550 | - | 897 | WP_024409316.1 | aldose 1-epimerase family protein | - |
| CR542_RS05515 () | 1070638..1072044 | - | 1407 | WP_024409317.1 | 6-phospho-beta-galactosidase | - |
| CR542_RS05520 () | 1072110..1073813 | - | 1704 | WP_024409318.1 | lactose-specific PTS transporter subunit EIIC | - |
| CR542_RS05525 () | 1073813..1074130 | - | 318 | WP_024409319.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| CR542_RS05530 () | 1074158..1075138 | - | 981 | WP_029743106.1 | tagatose-bisphosphate aldolase | - |
| CR542_RS05535 () | 1075141..1076073 | - | 933 | WP_024409321.1 | tagatose-6-phosphate kinase | - |
| CR542_RS05540 () | 1076085..1076600 | - | 516 | WP_002936382.1 | galactose-6-phosphate isomerase subunit LacB | - |
| CR542_RS05545 () | 1076634..1077059 | - | 426 | WP_003084983.1 | galactose-6-phosphate isomerase subunit LacA | - |
| CR542_RS05550 () | 1077296..1078246 | - | 951 | WP_024409322.1 | ROK family glucokinase | - |
| CR542_RS05555 () | 1078426..1079187 | + | 762 | WP_024409323.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| CR542_RS05560 () | 1079196..1079862 | + | 667 | Protein_1023 | HAD family hydrolase | - |
| CR542_RS05565 () | 1079906..1081771 | - | 1866 | WP_025310409.1 | relaxase/mobilization nuclease domain-containing protein | - |
| CR542_RS05570 () | 1081758..1082123 | - | 366 | WP_024409325.1 | MobC family plasmid mobilization relaxosome protein | - |
| CR542_RS05575 () | 1082133..1082492 | - | 360 | WP_024409326.1 | hypothetical protein | - |
| CR542_RS05580 () | 1082818..1083408 | - | 591 | WP_024409327.1 | hypothetical protein | - |
| CR542_RS05585 () | 1083449..1085362 | - | 1914 | WP_053338584.1 | ATP-dependent helicase | - |
| CR542_RS05590 () | 1085359..1087182 | - | 1824 | Protein_1029 | AAA family ATPase | - |
| CR542_RS05595 () | 1087190..1088134 | - | 945 | WP_024409330.1 | IS30 family transposase IS1252 | Transposase |
| CR542_RS05600 () | 1088225..1088428 | - | 204 | Protein_1031 | AAA family ATPase | - |
| CR542_RS05605 () | 1088409..1089203 | - | 795 | WP_024409332.1 | zeta toxin family protein | Toxin Detail |
| CR542_RS05610 () | 1089203..1089679 | - | 477 | WP_024409333.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CR542_RS05615 () | 1089749..1090033 | - | 285 | WP_024409334.1 | hypothetical protein | - |
| CR542_RS05620 () | 1090077..1090472 | - | 396 | WP_017285409.1 | hypothetical protein | - |
| CR542_RS05625 () | 1090476..1090703 | - | 228 | WP_024409335.1 | hypothetical protein | - |
| CR542_RS05630 () | 1090757..1091845 | - | 1089 | WP_024409336.1 | toprim domain-containing protein | - |
| CR542_RS05635 () | 1091885..1092523 | - | 639 | WP_024409337.1 | hypothetical protein | - |
| CR542_RS05640 () | 1092634..1092924 | - | 291 | WP_024409338.1 | hypothetical protein | - |
| CR542_RS05645 () | 1092939..1093238 | - | 300 | WP_024382151.1 | hypothetical protein | - |
| CR542_RS05650 () | 1093308..1094219 | - | 912 | WP_032505215.1 | hypothetical protein | - |
| CR542_RS05655 () | 1094234..1096117 | - | 1884 | WP_025310411.1 | IS607 family transposase ISTsi1 | Transposase |
| CR542_RS05660 () | 1096171..1096362 | - | 192 | WP_000503424.1 | hypothetical protein | - |
| CR542_RS05665 () | 1096433..1096663 | - | 231 | WP_000659121.1 | hypothetical protein | - |
| CR542_RS05670 () | 1096740..1097594 | - | 855 | WP_000743701.1 | ParB/RepB/Spo0J family partition protein | - |
| CR542_RS05675 () | 1097602..1098567 | - | 966 | WP_001145977.1 | plasmid recombination protein | - |
| CR542_RS05680 () | 1099086..1100117 | - | 1032 | WP_001170965.1 | AAA family ATPase | - |
| CR542_RS05685 () | 1100271..1100744 | - | 474 | WP_000323521.1 | sigma-70 family RNA polymerase sigma factor | - |
| CR542_RS05690 () | 1100828..1101253 | - | 426 | WP_000323896.1 | sigma-70 family RNA polymerase sigma factor | - |
| CR542_RS05695 () | 1101348..1101857 | - | 510 | WP_000872511.1 | hypothetical protein | VF |
| CR542_RS05710 () | 1102347..1102520 | - | 174 | WP_011528024.1 | cysteine-rich KTR domain-containing protein | - |
| CR542_RS05715 () | 1102572..1104491 | - | 1920 | WP_000691759.1 | Tetracycline resistance protein TetO | VF |
| CR542_RS05720 () | 1104858..1105232 | - | 375 | WP_001129922.1 | TnpV protein | - |
| CR542_RS05725 () | 1105172..1105903 | - | 732 | WP_024412117.1 | hypothetical protein | - |
| CR542_RS05730 () | 1105999..1106289 | - | 291 | WP_024400601.1 | membrane protein | - |
| CR542_RS05735 () | 1106303..1106602 | - | 300 | WP_024401832.1 | hypothetical protein | - |
| CR542_RS05740 () | 1106673..1108016 | - | 1344 | WP_024401833.1 | helicase C-terminal domain-containing protein | - |
| CR542_RS05745 () | 1108154..1109932 | - | 1779 | WP_024402041.1 | reverse transcriptase/maturase family protein | - |
| CR542_RS05755 () | 1110430..1115892 | - | 5463 | WP_053338587.1 | DEAD/DEAH box helicase family protein | - |
| CR542_RS05760 () | 1115941..1116492 | - | 552 | WP_053338588.1 | hypothetical protein | - |
| CR542_RS05765 () | 1116476..1116667 | - | 192 | WP_053338589.1 | thrombospondin type 3 repeat-containing protein | - |
| CR542_RS05770 () | 1116668..1121563 | - | 4896 | WP_053338590.1 | Agglutinin receptor | VF |
| CR542_RS05780 () | 1121844..1122434 | + | 591 | WP_024401254.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| CR542_RS05785 () | 1122431..1123276 | + | 846 | WP_024383472.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| CR542_RS05790 () | 1123338..1126139 | - | 2802 | WP_053338591.1 | CHAP domain-containing protein | - |
| CR542_RS05795 () | 1126141..1127103 | - | 963 | WP_074392493.1 | type IV secretion system protein VirB4 | - |
| CR542_RS05800 () | 1127108..1128781 | - | 1674 | WP_029174920.1 | group II intron reverse transcriptase/maturase | - |
| CR542_RS05805 () | 1129310..1130803 | - | 1494 | WP_162489883.1 | type VI secretion protein | - |
| CR542_RS05810 () | 1130760..1131113 | - | 354 | WP_017767989.1 | PrgI family protein | - |
| CR542_RS05815 () | 1131175..1132029 | - | 855 | WP_073259384.1 | conjugal transfer protein TrbL | - |
| CR542_RS05820 () | 1132048..1132290 | - | 243 | WP_001072171.1 | hypothetical protein | - |
| CR542_RS05825 () | 1132308..1134125 | - | 1818 | WP_099425926.1 | type IV secretory system conjugative DNA transfer family protein | - |
| CR542_RS05830 () | 1134125..1134613 | - | 489 | WP_099425972.1 | hypothetical protein | - |
| CR542_RS05835 () | 1134690..1135274 | - | 585 | WP_099425927.1 | CPBP family intramembrane metalloprotease | - |
| CR542_RS05840 () | 1135277..1135510 | - | 234 | WP_001005705.1 | hypothetical protein | - |
| CR542_RS05845 () | 1135519..1135902 | - | 384 | WP_014636956.1 | hypothetical protein | - |
| CR542_RS05850 () | 1135913..1136341 | - | 429 | WP_099425928.1 | hypothetical protein | - |
| CR542_RS05855 () | 1136325..1137680 | - | 1356 | WP_099425929.1 | DNA (cytosine-5-)-methyltransferase | - |
| CR542_RS05865 () | 1137829..1138647 | - | 819 | WP_053338596.1 | replication initiator protein A | - |
| CR542_RS05870 () | 1138650..1138817 | - | 168 | WP_032499127.1 | hypothetical protein | - |
| CR542_RS05875 () | 1139018..1139383 | - | 366 | WP_002936483.1 | 50S ribosomal protein L7/L12 | - |
| CR542_RS05880 () | 1139449..1139943 | - | 495 | WP_002936486.1 | 50S ribosomal protein L10 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|