MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 84583 bp
Accession: NZ_CP024050 Location: 655378..739960 Organism: Streptococcus suis strain CS100322 Replicon: chromosome
Accession: NZ_CP024050 Location: 655378..739960 Organism: Streptococcus suis strain CS100322 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR541_RS03410 () | 650489..650872 | + | 384 | WP_014636276.1 | hypothetical protein | - |
| CR541_RS03415 () | 650881..651114 | + | 234 | WP_014636277.1 | hypothetical protein | - |
| CR541_RS03420 () | 651117..651701 | + | 585 | WP_014636278.1 | CPBP family intramembrane metalloprotease | - |
| CR541_RS03425 () | 651778..652266 | + | 489 | WP_041179161.1 | hypothetical protein | - |
| CR541_RS03430 () | 652266..654083 | + | 1818 | WP_014636280.1 | type IV secretory system conjugative DNA transfer family protein | - |
| CR541_RS03435 () | 654101..654343 | + | 243 | WP_001072182.1 | hypothetical protein | - |
| CR541_RS03440 () | 654362..655216 | + | 855 | WP_014636281.1 | conjugal transfer protein TrbL | - |
| CR541_RS03445 () | 655278..655631 | + | 354 | WP_014636282.1 | PrgI family protein | - |
| CR541_RS03450 () | 655588..657939 | + | 2352 | WP_014636283.1 | ATPase AAA | - |
| CR541_RS03455 () | 657941..660742 | + | 2802 | WP_015445150.1 | CHAP domain-containing protein | - |
| CR541_RS03460 () | 660879..661889 | + | 1011 | WP_002936451.1 | Abi family protein | - |
| CR541_RS03465 () | 662003..662287 | + | 285 | Protein_601 | CHAP domain-containing protein | - |
| CR541_RS03470 () | 662373..662837 | - | 465 | WP_014636285.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CR541_RS03475 () | 662881..664002 | + | 1122 | WP_015445098.1 | IS110 family transposase ISCARN28 | Transposase |
| CR541_RS03480 () | 664379..664825 | - | 447 | Protein_604 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CR541_RS03485 () | 664822..665412 | - | 591 | WP_000037237.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| CR541_RS03490 () | 665582..670477 | + | 4896 | WP_099266036.1 | Agglutinin receptor | VF |
| CR541_RS03495 () | 670478..670669 | + | 192 | WP_014636288.1 | calcium-binding protein | - |
| CR541_RS03500 () | 670653..671204 | + | 552 | WP_014636289.1 | hypothetical protein | - |
| CR541_RS03505 () | 671253..677201 | + | 5949 | WP_014636290.1 | DEAD/DEAH box helicase family protein | - |
| CR541_RS03510 () | 677182..677557 | + | 376 | Protein_610 | TnpV protein | - |
| CR541_RS03515 () | 677924..679843 | + | 1920 | WP_014636291.1 | Tetracycline resistance protein TetO | VF |
| CR541_RS03520 () | 679894..681114 | + | 1221 | WP_009247026.1 | hypothetical protein | ARG |
| CR541_RS03530 () | 681713..682222 | + | 510 | WP_041179152.1 | hypothetical protein | VF |
| CR541_RS03535 () | 682317..682742 | + | 426 | WP_000323896.1 | sigma-70 family RNA polymerase sigma factor | - |
| CR541_RS03540 () | 682826..683299 | + | 474 | WP_000323521.1 | sigma-70 family RNA polymerase sigma factor | - |
| CR541_RS03545 () | 683453..684484 | + | 1032 | WP_001170965.1 | AAA family ATPase | - |
| CR541_RS03550 () | 685003..685968 | + | 966 | WP_001145977.1 | plasmid recombination protein | - |
| CR541_RS03555 () | 685976..686830 | + | 855 | WP_000743701.1 | ParB/RepB/Spo0J family partition protein | - |
| CR541_RS03560 () | 686907..687137 | + | 231 | WP_000659121.1 | hypothetical protein | - |
| CR541_RS03565 () | 687208..687399 | + | 192 | WP_000503424.1 | hypothetical protein | - |
| CR541_RS03570 () | 687453..689225 | + | 1773 | WP_014636293.1 | IS607 family transposase ISTsi1 | Transposase |
| CR541_RS03575 () | 689192..690151 | + | 960 | Protein_622 | hypothetical protein | - |
| CR541_RS03580 () | 690222..690521 | + | 300 | WP_014636295.1 | hypothetical protein | - |
| CR541_RS03585 () | 690535..690825 | + | 291 | WP_000893083.1 | hypothetical protein | - |
| CR541_RS03590 () | 690920..691558 | + | 639 | WP_014636296.1 | hypothetical protein | - |
| CR541_RS03595 () | 691598..692698 | + | 1101 | WP_014636297.1 | toprim domain-containing protein | - |
| CR541_RS03600 () | 692726..692953 | + | 228 | WP_000110922.1 | hypothetical protein | - |
| CR541_RS03605 () | 692950..693339 | + | 390 | WP_014636298.1 | hypothetical protein | - |
| CR541_RS03610 () | 693389..693679 | + | 291 | WP_000667951.1 | hypothetical protein | - |
| CR541_RS03615 () | 693749..694225 | + | 477 | WP_000578719.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CR541_RS03620 () | 694225..694992 | + | 768 | WP_001235242.1 | zeta toxin family protein | Toxin Detail |
| CR541_RS03625 () | 695029..697536 | + | 2508 | WP_001213955.1 | AAA family ATPase | - |
| CR541_RS03635 () | 697874..698236 | + | 363 | WP_000140674.1 | hypothetical protein | - |
| CR541_RS03640 () | 698239..698604 | + | 366 | WP_000431640.1 | plasmid mobilization relaxosome protein MobC | - |
| CR541_RS03645 () | 698591..700474 | + | 1884 | WP_014636299.1 | relaxase/mobilization nuclease domain-containing protein | - |
| CR541_RS03650 () | 700571..700786 | + | 216 | WP_014636300.1 | hypothetical protein | - |
| CR541_RS03655 () | 700868..701944 | + | 1077 | WP_014636301.1 | S8 family serine peptidase | - |
| CR541_RS03660 () | 701985..702683 | + | 699 | WP_000276750.1 | Sensory transduction protein regX3 | VF |
| CR541_RS03665 () | 702661..704004 | + | 1344 | WP_000977993.1 | HAMP domain-containing histidine kinase | - |
| CR541_RS03670 () | 704194..704895 | + | 702 | WP_000452012.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| CR541_RS03675 () | 704888..705625 | + | 738 | WP_099266038.1 | lantibiotic ABC transporter permease | - |
| CR541_RS03680 () | 705603..706289 | + | 687 | WP_001033677.1 | hypothetical protein | - |
| CR541_RS03685 () | 706637..706804 | + | 168 | WP_001058290.1 | gallidermin/nisin family lantibiotic | - |
| CR541_RS03690 () | 707045..710020 | + | 2976 | WP_014636302.1 | lantibiotic dehydratase | - |
| CR541_RS03695 () | 710001..711809 | + | 1809 | WP_000536729.1 | ABC transporter ATP-binding protein/permease | - |
| CR541_RS03700 () | 711802..713079 | + | 1278 | WP_099266040.1 | lanthionine synthetase C family protein | - |
| CR541_RS03705 () | 713081..713797 | + | 717 | WP_001226539.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| CR541_RS03710 () | 714065..714469 | + | 405 | WP_000878635.1 | sigma-70 family RNA polymerase sigma factor | - |
| CR541_RS03715 () | 714974..716716 | + | 1743 | Protein_649 | hypothetical protein ; Integrase | Integrase |
| CR541_RS03720 () | 716797..717093 | - | 297 | Protein_650 | IS5 family transposase IS1515 | Transposase |
| CR541_RS03725 () | 717319..718431 | + | 1113 | WP_011922747.1 | UDP-galactopyranose mutase | VF |
| CR541_RS03730 () | 718531..719076 | - | 546 | WP_012775026.1 | NAD(P)H-dependent oxidoreductase | - |
| CR541_RS03735 () | 719139..719588 | - | 450 | WP_009909619.1 | MarR family transcriptional regulator | - |
| CR541_RS03740 () | 719882..720729 | + | 848 | WP_087892711.1 | IS630 family transposase | - |
| CR541_RS03745 () | 720788..721285 | + | 498 | WP_011922751.1 | DUF5590 domain-containing protein | - |
| CR541_RS03750 () | 721282..722463 | + | 1182 | WP_011922154.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CR541_RS03755 () | 722478..723824 | + | 1347 | WP_011922752.1 | asparagine--tRNA ligase | - |
| CR541_RS03765 () | 724096..724323 | + | 228 | WP_002938604.1 | hypothetical protein | Antitoxin Detail |
| CR541_RS03770 () | 724313..724582 | + | 270 | WP_011922754.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CR541_RS03780 () | 724988..726307 | + | 1320 | WP_012775027.1 | MATE family efflux transporter | - |
| CR541_RS03785 () | 726358..726735 | + | 378 | WP_002937263.1 | RidA family protein | - |
| CR541_RS03790 () | 726757..727644 | + | 888 | WP_011922160.1 | RNase adapter RapZ | - |
| CR541_RS03795 () | 727641..728615 | + | 975 | WP_002937257.1 | YvcK family protein | - |
| CR541_RS03800 () | 728612..729529 | + | 918 | WP_002937252.1 | DNA-binding protein WhiA | - |
| CR541_RS03805 () | 729815..730510 | + | 696 | WP_012775028.1 | Crp/Fnr family transcriptional regulator | - |
| CR541_RS03810 () | 730768..732000 | + | 1233 | WP_024379073.1 | arginine deiminase | - |
| CR541_RS03815 () | 732000..732440 | + | 441 | WP_011922163.1 | GNAT family N-acetyltransferase | - |
| CR541_RS03820 () | 732459..733472 | + | 1014 | WP_011922164.1 | ornithine carbamoyltransferase | - |
| CR541_RS03825 () | 733590..734537 | + | 948 | WP_002941719.1 | carbamate kinase | - |
| CR541_RS03830 () | 734880..736382 | + | 1503 | WP_011922166.1 | YfcC family protein | - |
| CR541_RS03835 () | 736501..737841 | + | 1341 | WP_042507187.1 | dipeptidase | - |
| CR541_RS03840 () | 738212..742471 | + | 4260 | WP_011922168.1 | family 16 glycosylhydrolase | - |
| CR541_RS03845 () | 742762..743235 | - | 474 | WP_002941715.1 | arginine repressor | - |
| CR541_RS03850 () | 743284..744312 | - | 1029 | WP_012775031.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|