MGE detailed information
MGE type: Prophage MGE length: 34606 bp
Accession: NZ_CP023645 Location: 2416188..2450793 Organism: Shigella sonnei strain CFSAN030807 Replicon: chromosome
Accession: NZ_CP023645 Location: 2416188..2450793 Organism: Shigella sonnei strain CFSAN030807 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AT852_RS13440 () | 2412044..2412844 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| AT852_RS13445 () | 2412857..2413708 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| AT852_RS13450 () | 2413763..2414221 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| AT852_RS13460 () | 2414650..2415216 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| AT852_RS13465 () | 2415213..2416022 | - | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| AT852_RS13470 () | 2416188..2416397 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| AT852_RS13475 () | 2416410..2416553 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| AT852_RS13485 () | 2417223..2417510 | - | 288 | WP_001006860.1 | YebO family protein | - |
| AT852_RS13490 () | 2417585..2417728 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| AT852_RS13495 () | 2417887..2418126 | + | 240 | WP_001211011.1 | YobH family protein | - |
| AT852_RS13500 () | 2418269..2419060 | - | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| AT852_RS13505 () | 2419237..2420300 | + | 1064 | Protein_2441 | MFS transporter | - |
| AT852_RS13510 () | 2420346..2421227 | - | 882 | WP_000984517.1 | protease HtpX | - |
| AT852_RS13515 () | 2421419..2423467 | - | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| AT852_RS13520 () | 2423487..2424185 | - | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| AT852_RS13525 () | 2424282..2424779 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| AT852_RS13530 () | 2424909..2426192 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| AT852_RS13535 () | 2426161..2428794 | + | 2634 | WP_005138565.1 | hypothetical protein | VF |
| AT852_RS13540 () | 2428875..2430314 | + | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AT852_RS28785 () | 2430432..2430515 | + | 84 | Protein_2449 | DUF1480 family protein | - |
| AT852_RS13555 () | 2431287..2431445 | + | 159 | Protein_2451 | DUF1480 family protein | - |
| AT852_RS13560 () | 2431550..2431741 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AT852_RS13565 () | 2431742..2431942 | - | 201 | Protein_2453 | serine/threonine-protein phosphatase | - |
| AT852_RS13575 () | 2433198..2433503 | - | 306 | Protein_2455 | serine/threonine-protein phosphatase | - |
| AT852_RS13585 () | 2433558..2434255 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| AT852_RS13595 () | 2434269..2434442 | - | 174 | Protein_2457 | metallophosphoesterase | - |
| AT852_RS13605 () | 2435093..2436249 | + | 1157 | WP_085948186.1 | IS3 family transposase ISSd1 | Transposase |
| AT852_RS13610 () | 2436451..2438166 | + | 1716 | WP_011310192.1 | hypothetical protein | VF |
| AT852_RS13625 () | 2439583..2439843 | + | 261 | WP_077447296.1 | excisionase | - |
| AT852_RS13630 () | 2439872..2440326 | + | 455 | Protein_2462 | IS1-like element IS1A family transposase | - |
| AT852_RS13635 () | 2440421..2441649 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| AT852_RS13640 () | 2441660..2441905 | + | 246 | Protein_2464 | IS1 family transposase IS1R | Transposase |
| AT852_RS13645 () | 2441942..2443018 | + | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| - | 2443149..2443383 | + | 235 | - | - | Antitoxin Detail |
| - | 2443150..2443253 | - | 104 | - | - | Toxin Detail |
| AT852_RS13650 () | 2443411..2443752 | - | 342 | WP_000976476.1 | YebY family protein | - |
| AT852_RS13655 () | 2443765..2444637 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| AT852_RS13660 () | 2444641..2445015 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| AT852_RS13665 () | 2445154..2445384 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AT852_RS13670 () | 2445486..2446142 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AT852_RS13675 () | 2446166..2446828 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AT852_RS13680 () | 2446825..2448885 | - | 2061 | WP_000936913.1 | oligopeptidase B | - |
| AT852_RS13685 () | 2449094..2449753 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| AT852_RS13690 () | 2450080..2450436 | - | 357 | WP_001295500.1 | protein YebF | - |
| AT852_RS13695 () | 2450503..2450793 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| AT852_RS13700 () | 2450927..2452105 | + | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| AT852_RS13705 () | 2452161..2452802 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| AT852_RS13710 () | 2452839..2454650 | - | 1812 | WP_001069438.1 | phosphogluconate dehydratase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|