MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 72068 bp
Accession: NZ_CP023641 Location: 2506535..2578602 Organism: Pseudomonas mendocina strain MAE1-K Replicon: chromosome
Accession: NZ_CP023641 Location: 2506535..2578602 Organism: Pseudomonas mendocina strain MAE1-K Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO724_RS11855 () | 2501685..2501879 | + | 195 | WP_003243407.1 | 50S ribosomal protein L35 | - |
| CO724_RS11860 () | 2501909..2502265 | + | 357 | WP_003243409.1 | 50S ribosomal protein L20 | - |
| CO724_RS11865 () | 2502362..2503366 | + | 1005 | WP_096826280.1 | phenylalanine--tRNA ligase subunit alpha | - |
| CO724_RS11870 () | 2503402..2505780 | + | 2379 | WP_096826281.1 | phenylalanine--tRNA ligase subunit beta | - |
| CO724_RS11875 () | 2505784..2506086 | + | 303 | WP_003243414.1 | integration host factor subunit alpha | - |
| CO724_RS11880 () | 2506067..2506423 | + | 357 | WP_013716019.1 | MerR family transcriptional regulator | - |
| CO724_RS11890 () | 2506671..2507870 | - | 1200 | WP_003116603.1 | hypothetical protein ; Integrase | Integrase |
| CO724_RS24385 () | 2507906..2508067 | + | 162 | WP_010791794.1 | hypothetical protein | - |
| CO724_RS11900 () | 2508888..2509643 | + | 756 | WP_031755090.1 | hypothetical protein | - |
| CO724_RS11905 () | 2509768..2510589 | + | 822 | WP_031755092.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| CO724_RS11910 () | 2510573..2511508 | + | 936 | WP_003119940.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CO724_RS11915 () | 2511828..2512115 | - | 288 | WP_096826282.1 | HigA family addiction module antidote protein | - |
| CO724_RS11920 () | 2512133..2512411 | - | 279 | WP_019339397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CO724_RS11925 () | 2512507..2512740 | - | 234 | WP_096826283.1 | DUF2274 domain-containing protein | - |
| CO724_RS11930 () | 2512737..2514002 | - | 1266 | WP_096826284.1 | TrbI/VirB10 family protein | - |
| CO724_RS11935 () | 2514005..2514991 | - | 987 | WP_096826285.1 | P-type conjugative transfer protein TrbG | - |
| CO724_RS11940 () | 2514988..2515695 | - | 708 | WP_096826286.1 | conjugal transfer protein TrbF | - |
| CO724_RS11945 () | 2515708..2516868 | - | 1161 | WP_096826287.1 | P-type conjugative transfer protein TrbL | - |
| CO724_RS11950 () | 2516865..2517050 | - | 186 | WP_096826288.1 | hypothetical protein | - |
| CO724_RS11955 () | 2517063..2517797 | - | 735 | WP_096826289.1 | P-type conjugative transfer protein TrbJ | - |
| CO724_RS11960 () | 2517794..2520223 | - | 2430 | WP_096826290.1 | conjugal transfer protein TrbE | - |
| CO724_RS11965 () | 2520234..2520506 | - | 273 | WP_096826291.1 | VirB3 family type IV secretion system protein | - |
| CO724_RS11970 () | 2520503..2520844 | - | 342 | WP_096826292.1 | TrbC/VirB2 family protein | - |
| CO724_RS11975 () | 2520816..2521847 | - | 1032 | WP_198402259.1 | Type IV secretion system protein PtlH | VF |
| CO724_RS11980 () | 2521844..2522278 | - | 435 | WP_014596911.1 | CopG family transcriptional regulator | - |
| CO724_RS11985 () | 2522275..2524266 | - | 1992 | WP_096826294.1 | Conjugal transfer protein TraG | VF |
| CO724_RS11990 () | 2524624..2525595 | + | 972 | WP_010791789.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| CO724_RS11995 () | 2525648..2526313 | - | 666 | WP_003116624.1 | hypothetical protein | - |
| CO724_RS12000 () | 2526325..2527050 | - | 726 | WP_003119946.1 | HupE/UreJ family protein | - |
| CO724_RS24390 () | 2527107..2527448 | - | 342 | WP_124209411.1 | hypothetical protein | - |
| CO724_RS12005 () | 2527550..2527837 | + | 288 | WP_003116626.1 | metal-sensing transcriptional repressor | - |
| CO724_RS12010 () | 2527847..2528965 | + | 1119 | WP_003116627.1 | nickel/cobalt efflux protein RcnA | - |
| CO724_RS12015 () | 2528967..2529407 | + | 441 | WP_003116628.1 | DedA family protein | - |
| CO724_RS12020 () | 2529404..2530102 | + | 699 | WP_003116630.1 | conjugal transfer protein TraX | - |
| CO724_RS12025 () | 2530232..2531590 | - | 1359 | WP_003119948.1 | DUF4041 domain-containing protein | - |
| CO724_RS12030 () | 2531748..2531912 | - | 165 | Protein_2387 | transposase domain-containing protein | - |
| CO724_RS24395 () | 2531869..2532132 | - | 264 | WP_001446199.1 | IS66 family transposase ISPpu19 | Transposase |
| CO724_RS24400 () | 2532147..2532410 | + | 264 | WP_003116633.1 | hypothetical protein | - |
| CO724_RS12040 () | 2532634..2532914 | + | 281 | Protein_2390 | helix-turn-helix domain-containing protein | - |
| CO724_RS12045 () | 2532949..2533518 | + | 570 | WP_003116634.1 | Spore protein SP21 | VF |
| CO724_RS12050 () | 2533615..2536464 | + | 2850 | WP_003116635.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VF |
| CO724_RS12055 () | 2536482..2537912 | + | 1431 | WP_003116636.1 | cardiolipin synthase | - |
| CO724_RS12060 () | 2537940..2539820 | + | 1881 | WP_003116637.1 | ATP-dependent zinc metalloprotease FtsH 4 | VF |
| CO724_RS12065 () | 2539801..2540256 | + | 456 | WP_031755096.1 | thioredoxin TrxC | - |
| CO724_RS12070 () | 2540263..2541881 | + | 1619 | Protein_2396 | cation:proton antiporter | - |
| CO724_RS12075 () | 2541865..2542681 | + | 817 | Protein_2397 | diguanylate cyclase | - |
| CO724_RS12080 () | 2542657..2542848 | + | 192 | WP_003116642.1 | hypothetical protein | - |
| CO724_RS12085 () | 2542917..2543405 | + | 489 | WP_004152114.1 | phosphate-starvation-inducible PsiE family protein | - |
| CO724_RS12090 () | 2543392..2544354 | + | 963 | WP_014596893.1 | M48 family metalloprotease | - |
| CO724_RS12095 () | 2544374..2545480 | + | 1107 | WP_096826295.1 | Putative serine protease HhoB | VF |
| CO724_RS12100 () | 2545616..2546596 | - | 981 | WP_096825341.1 | IS5 family transposase ISPst5 | Transposase |
| CO724_RS12105 () | 2547359..2548228 | + | 870 | WP_014596892.1 | HTH-type transcriptional regulator MetR | VF |
| CO724_RS12110 () | 2548615..2548923 | - | 309 | WP_014596891.1 | transcriptional regulator | Antitoxin Detail |
| CO724_RS12115 () | 2548920..2549264 | - | 345 | WP_047588122.1 | toxin | Toxin Detail |
| CO724_RS12120 () | 2549422..2550349 | - | 928 | Protein_2406 | HTH-type transcriptional regulator GltC | VF |
| CO724_RS12125 () | 2550363..2551562 | - | 1200 | WP_096826296.1 | MFS transporter | - |
| CO724_RS12130 () | 2551647..2553500 | - | 1854 | WP_096826297.1 | Asparagine synthetase [glutamine-hydrolyzing] 3 | VF |
| CO724_RS12135 () | 2553523..2554593 | - | 1071 | WP_096826298.1 | Gfo/Idh/MocA family oxidoreductase | - |
| CO724_RS12140 () | 2554590..2555093 | - | 504 | WP_096826299.1 | GNAT family N-acetyltransferase | - |
| CO724_RS12145 () | 2555095..2556327 | - | 1233 | WP_096826300.1 | 5-aminolevulinate synthase | - |
| CO724_RS12150 () | 2556484..2557338 | + | 855 | WP_096826301.1 | helix-turn-helix transcriptional regulator | - |
| CO724_RS12155 () | 2557356..2559305 | - | 1950 | WP_096826302.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| CO724_RS12160 () | 2559655..2560182 | - | 528 | WP_003116658.1 | S26 family signal peptidase | - |
| CO724_RS12165 () | 2560179..2560421 | - | 243 | WP_017676537.1 | hypothetical protein | - |
| CO724_RS12170 () | 2560418..2561056 | - | 639 | WP_003116661.1 | Sporulation initiation inhibitor protein Soj | VF |
| CO724_RS12175 () | 2561301..2562128 | - | 828 | WP_003116662.1 | replication initiator protein A | - |
| CO724_RS12180 () | 2562140..2562511 | - | 372 | WP_003116663.1 | helix-turn-helix domain-containing protein | - |
| CO724_RS12185 () | 2563019..2563531 | - | 513 | WP_003116664.1 | antirestriction protein ArdA | - |
| CO724_RS12190 () | 2563830..2564588 | - | 759 | WP_017676541.1 | class I SAM-dependent methyltransferase | - |
| CO724_RS12195 () | 2565082..2565714 | - | 633 | WP_003116667.1 | hypothetical protein | - |
| CO724_RS12200 () | 2565887..2566699 | + | 813 | WP_003116668.1 | NYN domain-containing protein | - |
| CO724_RS12205 () | 2566736..2567242 | - | 507 | WP_003116669.1 | DNA repair protein RadC | - |
| CO724_RS12210 () | 2567737..2568084 | - | 348 | WP_003116670.1 | hypothetical protein | - |
| CO724_RS24585 () | 2568081..2568566 | - | 486 | WP_162130138.1 | hypothetical protein | - |
| CO724_RS12220 () | 2569126..2570175 | + | 1050 | WP_017676545.1 | hypothetical protein | - |
| CO724_RS12225 () | 2570178..2571053 | - | 876 | WP_003116672.1 | WYL domain-containing protein | - |
| CO724_RS12230 () | 2571199..2571471 | + | 273 | WP_100227597.1 | hypothetical protein | - |
| CO724_RS12235 () | 2571537..2572184 | + | 648 | WP_003116673.1 | hypothetical protein | - |
| CO724_RS12240 () | 2572577..2574943 | + | 2367 | WP_003116674.1 | DEAD/DEAH box helicase family protein | - |
| CO724_RS12245 () | 2575360..2576301 | + | 942 | WP_017676547.1 | HNH endonuclease | - |
| CO724_RS12250 () | 2576304..2577773 | + | 1470 | WP_003116676.1 | type I restriction-modification system subunit M | - |
| CO724_RS12255 () | 2577770..2578618 | + | 849 | WP_198402260.1 | restriction endonuclease subunit S | - |
| CO724_RS12260 () | 2578889..2579212 | + | 324 | WP_096826303.1 | helix-hairpin-helix domain-containing protein | - |
| CO724_RS12265 () | 2579374..2582787 | + | 3414 | WP_096826304.1 | exodeoxyribonuclease V subunit gamma | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|