MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94044 bp
Accession: NZ_CP023469 Location: 1..94044 Organism: Salmonella enterica subsp. enterica strain BAA-1586 Replicon: plasmid pSalMiami
Accession: NZ_CP023469 Location: 1..94044 Organism: Salmonella enterica subsp. enterica strain BAA-1586 Replicon: plasmid pSalMiami
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COO54_RS23520 () | 96..385 | + | 290 | Protein_0 | disulfide bond formation protein DsbA | - |
| COO54_RS23525 () | 401..556 | + | 156 | WP_085376334.1 | disulfide bond formation protein DsbA | - |
| COO54_RS23530 () | 722..1165 | + | 444 | Protein_2 | phospholipase | - |
| COO54_RS23535 () | 1344..1610 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| COO54_RS23540 () | 1858..1935 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| COO54_RS23545 () | 1916..2793 | + | 878 | Protein_5 | incFII family plasmid replication initiator RepA | - |
| COO54_RS23555 () | 3803..4098 | + | 296 | Protein_6 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| COO54_RS23560 () | 4098..4387 | + | 290 | Protein_7 | helix-turn-helix transcriptional regulator | - |
| COO54_RS23565 () | 5011..5280 | + | 270 | WP_117338871.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| COO54_RS23570 () | 5283..5549 | + | 267 | WP_085376296.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| COO54_RS23575 () | 5739..6500 | - | 762 | WP_117338872.1 | substrate-binding domain-containing protein | - |
| COO54_RS23580 () | 6849..7978 | - | 1130 | Protein_11 | IS3 family transposase | - |
| COO54_RS23585 () | 8962..9915 | + | 954 | WP_117338873.1 | ABC transporter | - |
| COO54_RS23590 () | 9925..11991 | + | 2067 | WP_117338874.1 | ATP-binding cassette domain-containing protein | - |
| COO54_RS23595 () | 12114..13157 | + | 1044 | WP_162887311.1 | efflux RND transporter periplasmic adaptor subunit | - |
| COO54_RS23600 () | 13164..15113 | + | 1950 | WP_117338875.1 | ATP-binding cassette domain-containing protein | - |
| COO54_RS23605 () | 15110..16468 | + | 1359 | WP_117338876.1 | TolC family protein | - |
| COO54_RS23610 () | 16488..17735 | + | 1248 | WP_085376337.1 | beta-ketoacyl-[acyl-carrier-protein] synthase family protein | - |
| COO54_RS23615 () | 17732..18502 | + | 771 | WP_139815354.1 | hypothetical protein | - |
| COO54_RS23620 () | 18492..18731 | + | 240 | WP_085376327.1 | acyl carrier protein | - |
| COO54_RS23625 () | 18733..19470 | + | 738 | WP_085376326.1 | SDR family oxidoreductase | - |
| COO54_RS23630 () | 19777..20633 | + | 857 | Protein_21 | IS3 family transposase | - |
| COO54_RS23640 () | 20915..21982 | + | 1068 | Protein_22 | IS110 family transposase | - |
| COO54_RS23645 () | 21999..22265 | + | 267 | Protein_23 | IS3 family transposase | - |
| COO54_RS23650 () | 22432..22647 | - | 216 | WP_085376324.1 | hypothetical protein | - |
| COO54_RS23655 () | 23576..23837 | + | 262 | Protein_25 | transcriptional regulator | - |
| COO54_RS23660 () | 23850..24392 | + | 543 | WP_085376323.1 | type 1 fimbrial protein | - |
| COO54_RS23665 () | 24407..26851 | + | 2445 | WP_117338877.1 | F4 (K88) fimbrial usher FaeD | - |
| COO54_RS23670 () | 26844..27635 | + | 792 | WP_085376321.1 | fimbria/pilus periplasmic chaperone | - |
| COO54_RS23675 () | 27670..28161 | + | 492 | WP_085376320.1 | F4 (K88) fimbria minor subunit FaeF | - |
| COO54_RS23680 () | 28390..29226 | + | 837 | WP_117338878.1 | fimbrial protein | - |
| COO54_RS23685 () | 29381..30178 | + | 798 | WP_085376318.1 | F4 (K88) fimbria minor subunit FaeH | - |
| COO54_RS23690 () | 30210..30974 | + | 765 | WP_085376317.1 | F4 (K88) fimbria minor subunit FaeI | - |
| COO54_RS23695 () | 30991..31488 | + | 498 | Protein_33 | hypothetical protein | - |
| COO54_RS23700 () | 31741..32129 | + | 389 | Protein_34 | transposase | - |
| COO54_RS24235 () | 32429..32587 | + | 159 | WP_162887309.1 | hypothetical protein | - |
| COO54_RS23710 () | 32831..33565 | + | 735 | WP_085376316.1 | hypothetical protein | - |
| COO54_RS24240 () | 33847..34665 | + | 819 | WP_162887312.1 | AraC family transcriptional regulator | - |
| COO54_RS23720 () | 34894..35582 | - | 689 | Protein_38 | IS3 family transposase | - |
| COO54_RS23725 () | 35976..36937 | + | 962 | Protein_39 | ISNCY family transposase | - |
| COO54_RS23730 () | 37448..38116 | + | 669 | WP_085376314.1 | site-specific integrase | - |
| COO54_RS23735 () | 38424..39413 | - | 990 | WP_085376335.1 | RepB family plasmid replication initiator protein | - |
| COO54_RS23740 () | 39906..40178 | - | 273 | Protein_42 | polysaccharide deacetylase family protein | - |
| COO54_RS23745 () | 40906..41124 | + | 219 | WP_079953237.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| COO54_RS23750 () | 41126..41431 | + | 306 | WP_001159865.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| COO54_RS23755 () | 41433..41723 | + | 291 | WP_085376312.1 | cytoplasmic protein | - |
| COO54_RS23760 () | 41720..42256 | + | 537 | Protein_46 | cytoplasmic protein | - |
| COO54_RS23765 () | 42269..43051 | + | 783 | WP_079953235.1 | site-specific integrase | - |
| COO54_RS23770 () | 43201..44130 | - | 930 | WP_057394647.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| COO54_RS23775 () | 44545..45750 | + | 1206 | WP_117338880.1 | AAA family ATPase | - |
| COO54_RS23780 () | 45750..46724 | + | 975 | WP_162887313.1 | ParB/RepB/Spo0J family partition protein | - |
| COO54_RS23790 () | 46806..48081 | - | 1276 | Protein_51 | Y-family DNA polymerase | - |
| COO54_RS23795 () | 48081..48503 | - | 423 | WP_057394645.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| COO54_RS23805 () | 49034..49501 | + | 468 | WP_085376311.1 | hypothetical protein | - |
| COO54_RS23810 () | 49498..49833 | + | 336 | WP_117338883.1 | hypothetical protein | - |
| COO54_RS24245 () | 49850..50011 | - | 162 | WP_162887314.1 | hypothetical protein | - |
| COO54_RS23820 () | 50194..50874 | + | 681 | WP_057394644.1 | DNA methylase | - |
| COO54_RS23825 () | 50915..51334 | + | 420 | WP_117338885.1 | DUF1380 domain-containing protein | - |
| COO54_RS23830 () | 51388..51793 | + | 406 | Protein_58 | DUF1380 family protein | - |
| COO54_RS23835 () | 51861..52628 | + | 768 | WP_057394641.1 | hypothetical protein | - |
| COO54_RS23845 () | 53047..53481 | + | 435 | WP_117338904.1 | antirestriction protein | - |
| COO54_RS23850 () | 53548..53982 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| COO54_RS23855 () | 54206..54529 | + | 324 | WP_117338886.1 | DNA polymerase III subunit theta | - |
| COO54_RS24250 () | 54493..54678 | + | 186 | WP_133165360.1 | hypothetical protein | - |
| COO54_RS23875 () | 55272..55790 | + | 519 | WP_057394638.1 | single-stranded DNA-binding protein SSB2 | - |
| COO54_RS23880 () | 55845..56087 | + | 243 | WP_000131519.1 | DUF905 domain-containing protein | - |
| COO54_RS23885 () | 56156..58153 | + | 1998 | WP_117338888.1 | ParB/RepB/Spo0J family partition protein | - |
| COO54_RS23890 () | 58193..58627 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| COO54_RS23895 () | 58624..59361 | + | 738 | WP_117338889.1 | plasmid SOS inhibition protein A | - |
| COO54_RS24255 () | 59610..59768 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| COO54_RS23900 () | 59871..60689 | + | 819 | Protein_70 | DUF945 domain-containing protein | - |
| COO54_RS23905 () | 61000..61470 | - | 471 | WP_042828200.1 | transglycosylase SLT domain-containing protein | - |
| COO54_RS23915 () | 61886..62266 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| COO54_RS23920 () | 62459..63145 | + | 687 | WP_085376305.1 | PAS domain-containing protein | - |
| COO54_RS23925 () | 63239..63466 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| COO54_RS23930 () | 63508..63870 | + | 363 | WP_001274202.1 | type IV conjugative transfer system pilin TraA | - |
| COO54_RS23935 () | 63885..64196 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| COO54_RS23940 () | 64218..64784 | + | 567 | WP_058215155.1 | type IV conjugative transfer system protein TraE | - |
| COO54_RS23945 () | 64771..65511 | + | 741 | WP_117338891.1 | type-F conjugative transfer system secretin TraK | - |
| COO54_RS23950 () | 65511..66932 | + | 1422 | WP_117338892.1 | conjugal transfer protein TraB | - |
| COO54_RS23955 () | 66922..67518 | + | 597 | WP_047593686.1 | conjugal transfer protein TraP | - |
| COO54_RS23960 () | 67496..67741 | + | 246 | WP_117338893.1 | DUF2689 domain-containing protein | - |
| COO54_RS23965 () | 67738..68253 | + | 516 | WP_085376303.1 | type IV conjugative transfer system lipoprotein TraV | - |
| COO54_RS23970 () | 68388..68609 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| COO54_RS23975 () | 68602..69069 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| COO54_RS23980 () | 69066..69449 | + | 384 | WP_117338894.1 | hypothetical protein | - |
| COO54_RS23985 () | 69465..72113 | + | 2649 | WP_117338895.1 | type IV secretion system protein TraC | - |
| COO54_RS23990 () | 72088..72474 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| COO54_RS23995 () | 72471..73103 | + | 633 | WP_079967495.1 | type-F conjugative transfer system protein TraW | - |
| COO54_RS24000 () | 73100..74092 | + | 993 | WP_000833319.1 | conjugal transfer pilus assembly protein TraU | - |
| COO54_RS24005 () | 74111..74419 | + | 309 | WP_080235917.1 | hypothetical protein | - |
| COO54_RS24010 () | 74404..75042 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| COO54_RS24015 () | 75079..75498 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| COO54_RS24020 () | 75495..77321 | + | 1827 | WP_117338896.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| COO54_RS24025 () | 77332..77547 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| COO54_RS24030 () | 77559..78308 | + | 750 | WP_117338897.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| COO54_RS24035 () | 78522..78815 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| COO54_RS24040 () | 78802..79350 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| COO54_RS24045 () | 79340..80722 | + | 1383 | WP_117338898.1 | conjugal transfer protein TraH | - |
| COO54_RS24050 () | 80719..83541 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| COO54_RS24055 () | 83557..84051 | + | 495 | WP_077916534.1 | entry exclusion protein | - |
| COO54_RS24060 () | 84087..84818 | + | 732 | WP_031608647.1 | complement resistance protein TraT | - |
| COO54_RS24065 () | 85195..87387 | + | 2193 | WP_117338899.1 | type IV conjugative transfer system coupling protein TraD | - |
| COO54_RS24070 () | 87387..92645 | + | 5259 | WP_117338900.1 | conjugative transfer relaxase/helicase TraI | - |
| COO54_RS24075 () | 92665..93405 | + | 741 | Protein_104 | conjugal transfer pilus acetylase TraX | - |
| COO54_RS24080 () | 93460..94023 | + | 564 | WP_117338901.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|