MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 145449 bp
Accession: NZ_CP023467 Location: 1796087..1941535 Organism: Dickeya dadantii strain DSM 18020 Replicon: chromosome
Accession: NZ_CP023467 Location: 1796087..1941535 Organism: Dickeya dadantii strain DSM 18020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO076_RS08215 () | 1791261..1792970 | - | 1710 | WP_038910834.1 | ABC transporter permease | - |
| CO076_RS08220 () | 1793106..1794203 | + | 1098 | WP_038910835.1 | ABC transporter substrate-binding protein | - |
| CO076_RS08225 () | 1794264..1795190 | - | 927 | WP_038910836.1 | LysR family transcriptional regulator | - |
| CO076_RS08230 () | 1795588..1796355 | - | 768 | WP_038910837.1 | CDP-diacylglycerol diphosphatase | - |
| CO076_RS08235 () | 1796542..1797441 | - | 900 | WP_013317357.1 | LysR family transcriptional regulator | - |
| CO076_RS08240 () | 1797608..1799146 | + | 1539 | WP_038900867.1 | ABC transporter substrate-binding protein | - |
| CO076_RS08245 () | 1799368..1800252 | + | 885 | WP_038910839.1 | dihydrodipicolinate synthase family protein | - |
| CO076_RS08250 () | 1800249..1801202 | + | 954 | WP_013317360.1 | nucleoside hydrolase | - |
| CO076_RS08255 () | 1801199..1802167 | + | 969 | WP_038910840.1 | nucleoside hydrolase | - |
| CO076_RS08260 () | 1802281..1803255 | + | 975 | WP_038900871.1 | ABC transporter permease | - |
| CO076_RS08265 () | 1803252..1804172 | + | 921 | WP_038910841.1 | ABC transporter permease | - |
| CO076_RS08270 () | 1804176..1805969 | + | 1794 | WP_038910842.1 | Glutathione import ATP-binding protein GsiA | VF |
| CO076_RS08275 () | 1806083..1807021 | + | 939 | WP_038910843.1 | alpha/beta hydrolase | - |
| CO076_RS08280 () | 1807018..1808064 | + | 1047 | WP_038910844.1 | alginate lyase family protein | - |
| CO076_RS08285 () | 1808098..1809066 | - | 969 | WP_038910845.1 | threo-3-hydroxy-L-aspartate ammonia-lyase | - |
| CO076_RS08290 () | 1809264..1809884 | + | 621 | WP_038910846.1 | PAS domain-containing protein | - |
| CO076_RS08295 () | 1809983..1811194 | - | 1212 | WP_038910847.1 | MFS transporter | - |
| CO076_RS08300 () | 1811903..1812880 | + | 978 | WP_013317371.1 | Chemotaxis protein CheV | VF |
| CO076_RS08305 () | 1813298..1814953 | + | 1656 | WP_038900879.1 | malonate decarboxylase subunit alpha | - |
| CO076_RS08310 () | 1814954..1815811 | + | 858 | WP_038910848.1 | triphosphoribosyl-dephospho-CoA synthase | - |
| CO076_RS08315 () | 1815821..1816120 | + | 300 | WP_038910849.1 | malonate decarboxylase acyl carrier protein | - |
| CO076_RS08320 () | 1816113..1816946 | + | 834 | WP_038910850.1 | biotin-independent malonate decarboxylase subunit beta | - |
| CO076_RS08325 () | 1816943..1817743 | + | 801 | WP_038910851.1 | biotin-independent malonate decarboxylase subunit gamma | - |
| CO076_RS08330 () | 1818001..1818960 | + | 960 | WP_013317378.1 | AEC family transporter | - |
| CO076_RS08335 () | 1818982..1819599 | + | 618 | WP_038910852.1 | malonate decarboxylase holo-ACP synthase | - |
| CO076_RS08340 () | 1819601..1820509 | + | 909 | WP_038910854.1 | malonate decarboxylase subunit epsilon | - |
| CO076_RS08345 () | 1820493..1821425 | - | 933 | WP_038910855.1 | LysR family transcriptional regulator | - |
| CO076_RS08350 () | 1821615..1822442 | - | 828 | WP_013317383.1 | Manganese transport system membrane protein MntB | VF |
| CO076_RS08355 () | 1822444..1823301 | - | 858 | WP_038910856.1 | metal ABC transporter permease | - |
| CO076_RS08360 () | 1823294..1824190 | - | 897 | WP_038900886.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| CO076_RS08365 () | 1824187..1825104 | - | 918 | WP_038912491.1 | Periplasmic chelated iron-binding protein YfeA | VF |
| CO076_RS08370 () | 1825495..1826397 | - | 903 | WP_038910857.1 | SDR family oxidoreductase | - |
| CO076_RS08375 () | 1826483..1827070 | + | 588 | WP_038912492.1 | TetR/AcrR family transcriptional regulator | - |
| CO076_RS08380 () | 1827207..1828127 | - | 921 | WP_038912493.1 | LysR family transcriptional regulator | - |
| CO076_RS08385 () | 1828442..1829764 | + | 1323 | WP_201765900.1 | MFS transporter | - |
| CO076_RS08390 () | 1829806..1830555 | + | 750 | WP_013317389.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| CO076_RS08395 () | 1830571..1831416 | + | 846 | WP_038910859.1 | transketolase | - |
| CO076_RS08400 () | 1831416..1832417 | + | 1002 | WP_038910860.1 | transketolase family protein | - |
| CO076_RS08405 () | 1832507..1833736 | - | 1230 | WP_107768250.1 | alpha/beta hydrolase | - |
| CO076_RS08410 () | 1833737..1834885 | - | 1149 | WP_038910863.1 | iron-containing alcohol dehydrogenase | - |
| CO076_RS08415 () | 1835179..1836150 | + | 972 | WP_038910864.1 | AraC family transcriptional regulator | - |
| CO076_RS08420 () | 1836239..1836664 | + | 426 | WP_050570319.1 | hypothetical protein | - |
| CO076_RS08425 () | 1836718..1837635 | - | 918 | WP_038910865.1 | DMT family transporter | - |
| CO076_RS08430 () | 1837925..1838761 | + | 837 | WP_038910866.1 | transporter substrate-binding domain-containing protein | - |
| CO076_RS08435 () | 1838769..1839458 | + | 690 | WP_038910867.1 | 5-oxoprolinase subunit PxpB | - |
| CO076_RS08440 () | 1839455..1840435 | + | 981 | WP_038910868.1 | biotin-dependent carboxyltransferase family protein | - |
| CO076_RS08445 () | 1840445..1841212 | + | 768 | WP_038912494.1 | LamB/YcsF family protein | - |
| CO076_RS08450 () | 1841505..1842707 | - | 1203 | WP_038910869.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CO076_RS08455 () | 1843052..1843975 | + | 924 | WP_013317403.1 | nitrogen assimilation transcriptional regulator NAC | - |
| CO076_RS08460 () | 1844084..1844515 | + | 432 | WP_013317404.1 | acetyl-CoA carboxylase | - |
| CO076_RS08465 () | 1844638..1845390 | + | 753 | WP_013317405.1 | SDR family oxidoreductase | - |
| CO076_RS08470 () | 1845413..1846108 | + | 696 | WP_012770278.1 | amino acid ABC transporter permease | - |
| CO076_RS08475 () | 1846114..1846884 | + | 771 | WP_013317407.1 | amino acid ABC transporter permease | - |
| CO076_RS08480 () | 1846890..1847615 | + | 726 | WP_167401391.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| CO076_RS08485 () | 1847918..1848793 | - | 876 | WP_038910871.1 | alpha/beta hydrolase | - |
| CO076_RS08490 () | 1848708..1849925 | - | 1218 | WP_038910872.1 | dienelactone hydrolase family protein | - |
| CO076_RS22725 () | 1850619..1850921 | - | 303 | WP_148226870.1 | hypothetical protein | - |
| CO076_RS08495 () | 1851512..1852132 | - | 621 | Protein_1626 | IS3 family transposase IS1400 | Transposase |
| CO076_RS08500 () | 1852521..1855559 | + | 3039 | WP_050570231.1 | Phthiocerol synthesis polyketide synthase type I PpsE | VF |
| CO076_RS08505 () | 1855559..1860151 | + | 4593 | WP_038910873.1 | Gramicidin S synthase 2 | VF |
| CO076_RS08510 () | 1860144..1860866 | + | 723 | WP_038900903.1 | Linear gramicidin dehydrogenase LgrE | VF |
| CO076_RS08515 () | 1860863..1864612 | + | 3750 | WP_038910874.1 | ATP-binding cassette domain-containing protein | - |
| CO076_RS08520 () | 1864605..1872356 | + | 7752 | WP_038910875.1 | Tyrocidine synthase 3 | VF |
| CO076_RS08525 () | 1872359..1882366 | + | 10008 | WP_107768253.1 | Dimodular nonribosomal peptide synthase | VF |
| CO076_RS08530 () | 1882562..1884868 | + | 2307 | WP_152490675.1 | M20/M25/M40 family metallo-hydrolase | - |
| CO076_RS08535 () | 1884920..1885879 | + | 960 | WP_038910878.1 | 2,3-diaminopropionate biosynthesis protein SbnA | - |
| CO076_RS08540 () | 1885917..1886885 | + | 969 | WP_038910880.1 | 2,3-diaminopropionate biosynthesis protein SbnB | - |
| CO076_RS08550 () | 1887114..1887517 | + | 404 | Protein_1636 | IS3 family transposase ISLad1 | Transposase |
| CO076_RS22730 () | 1888010..1888261 | + | 252 | WP_152490677.1 | hypothetical protein | - |
| CO076_RS08560 () | 1888254..1888844 | + | 591 | WP_038910883.1 | hypothetical protein | - |
| CO076_RS08565 () | 1889070..1890773 | + | 1704 | WP_038910884.1 | DUF2326 domain-containing protein | - |
| CO076_RS08570 () | 1890913..1892023 | - | 1111 | Protein_1640 | IS3 family transposase | - |
| CO076_RS08575 () | 1892103..1892906 | + | 804 | Protein_1641 | DUF1738 domain-containing protein | - |
| CO076_RS08580 () | 1893226..1893462 | + | 237 | WP_038911535.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| CO076_RS08585 () | 1893465..1893779 | + | 315 | WP_019844797.1 | CcdB family protein | Toxin Detail |
| CO076_RS08590 () | 1893776..1894042 | - | 267 | Protein_1644 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| CO076_RS08595 () | 1894044..1896548 | + | 2505 | Protein_1645 | DNA/RNA non-specific endonuclease | - |
| CO076_RS08600 () | 1896545..1896955 | + | 411 | WP_081639236.1 | RhsIA family immunity protein | - |
| CO076_RS22895 () | 1897303..1897469 | + | 167 | Protein_1647 | integrase core domain-containing protein | - |
| CO076_RS08610 () | 1897563..1899575 | - | 2013 | WP_038910887.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| CO076_RS08615 () | 1899889..1900281 | - | 393 | WP_013317415.1 | VOC family protein | - |
| CO076_RS08620 () | 1900428..1900583 | - | 156 | Protein_1650 | alpha/beta hydrolase | - |
| CO076_RS08625 () | 1900674..1901249 | + | 576 | WP_038910888.1 | ABATE domain-containing protein | - |
| CO076_RS08630 () | 1901631..1902197 | + | 567 | WP_038910889.1 | TetR/AcrR family transcriptional regulator | - |
| CO076_RS08635 () | 1902261..1902737 | + | 477 | WP_038910890.1 | nuclear transport factor 2 family protein | - |
| CO076_RS08640 () | 1902945..1903952 | + | 1008 | WP_038910891.1 | alpha/beta hydrolase | - |
| CO076_RS08645 () | 1904169..1904893 | - | 725 | Protein_1655 | type 1 glutamine amidotransferase | - |
| CO076_RS08650 () | 1905011..1905778 | + | 768 | WP_038912499.1 | helix-turn-helix transcriptional regulator | - |
| CO076_RS08655 () | 1905948..1906418 | - | 471 | WP_033577180.1 | cyanase | - |
| CO076_RS08660 () | 1906446..1907105 | - | 660 | WP_038910894.1 | carbonic anhydrase | - |
| CO076_RS08665 () | 1907216..1908103 | + | 888 | WP_038910895.1 | HTH-type transcriptional regulator CynR | VF |
| CO076_RS08670 () | 1908268..1908615 | + | 348 | WP_071604518.1 | AHH domain-containing protein | - |
| CO076_RS08675 () | 1908612..1909169 | + | 558 | WP_038910897.1 | hypothetical protein | - |
| CO076_RS08680 () | 1909297..1909902 | + | 606 | Protein_1662 | conjugal transfer protein TrbE | - |
| CO076_RS08685 () | 1909901..1910359 | + | 459 | Protein_1663 | conjugal transfer protein TrbF | - |
| CO076_RS08695 () | 1910528..1911073 | + | 546 | Protein_1664 | Type IV secretion system protein virB10 | VF |
| CO076_RS08700 () | 1911203..1911326 | + | 124 | Protein_1665 | transposase | - |
| CO076_RS22740 () | 1911345..1928162 | + | 16818 | WP_159077861.1 | Tyrocidine synthase 3 | VF |
| CO076_RS08750 () | 1928108..1929265 | + | 1158 | WP_107768257.1 | Tyrocidine synthase 3 | VF |
| CO076_RS08755 () | 1929265..1935354 | + | 6090 | WP_107768259.1 | Linear gramicidin synthase subunit D | VF |
| CO076_RS08760 () | 1935501..1935731 | + | 231 | Protein_1669 | conjugal transfer protein TrbI | - |
| CO076_RS08765 () | 1935785..1936096 | - | 312 | WP_038910902.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CO076_RS08770 () | 1936093..1936377 | - | 285 | WP_038910903.1 | damage-inducible protein J | - |
| CO076_RS08775 () | 1936581..1937692 | + | 1112 | WP_167401377.1 | IS3 family transposase IS1400 | Transposase |
| CO076_RS08780 () | 1937844..1939076 | - | 1233 | WP_038910408.1 | MFS transporter | - |
| CO076_RS08785 () | 1939212..1939979 | + | 768 | WP_038910409.1 | helix-turn-helix transcriptional regulator | - |
| CO076_RS08790 () | 1940145..1940414 | + | 270 | Protein_1675 | recombinase | - |
| CO076_RS08795 () | 1940407..1940808 | - | 402 | WP_038910411.1 | H-NS histone family protein | - |
| CO076_RS08805 () | 1941110..1941328 | - | 219 | WP_038912444.1 | helix-turn-helix domain-containing protein | - |
| CO076_RS08810 () | 1941421..1941652 | - | 232 | Protein_1678 | helix-turn-helix transcriptional regulator | - |
| CO076_RS08815 () | 1941759..1942004 | + | 246 | WP_038910416.1 | helix-turn-helix domain-containing protein | - |
| CO076_RS22745 () | 1942104..1942277 | + | 174 | WP_159077862.1 | hypothetical protein | - |
| CO076_RS08820 () | 1942321..1942800 | - | 480 | WP_038910417.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|