MGE detailed information
MGE type: Prophage MGE length: 58520 bp
Accession: NZ_CP023184 Location: 2171397..2229916 Organism: Yersinia ruckeri strain NHV_3758 Replicon: chromosome
Accession: NZ_CP023184 Location: 2171397..2229916 Organism: Yersinia ruckeri strain NHV_3758 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLC90_RS09885 () | 2167870..2168499 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| CLC90_RS09890 () | 2168724..2169392 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| CLC90_RS09895 () | 2170133..2171278 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| CLC90_RS09900 () | 2171397..2172002 | + | 606 | WP_096823430.1 | tyrosine-type recombinase/integrase | - |
| CLC90_RS17775 () | 2172301..2172468 | + | 168 | WP_193553623.1 | hypothetical protein | - |
| CLC90_RS09905 () | 2172773..2175064 | - | 2292 | WP_096823432.1 | AAA family ATPase | - |
| CLC90_RS09910 () | 2175548..2177275 | - | 1728 | WP_096823433.1 | AIPR family protein | - |
| CLC90_RS09915 () | 2177520..2185868 | - | 8349 | WP_096823434.1 | hypothetical protein | - |
| CLC90_RS17685 () | 2186134..2186295 | - | 162 | WP_157836120.1 | hypothetical protein | - |
| CLC90_RS09920 () | 2186370..2187758 | - | 1389 | WP_096823435.1 | hypothetical protein | - |
| CLC90_RS09925 () | 2187771..2188031 | - | 261 | WP_096823436.1 | bacteriocin | - |
| CLC90_RS09930 () | 2188031..2188414 | - | 384 | WP_096823437.1 | hypothetical protein | - |
| CLC90_RS09935 () | 2188417..2189076 | - | 660 | WP_096823438.1 | hypothetical protein | - |
| CLC90_RS09940 () | 2189332..2189706 | - | 375 | WP_096823439.1 | hypothetical protein | - |
| CLC90_RS09945 () | 2189681..2190709 | - | 1029 | WP_096823440.1 | hypothetical protein | - |
| CLC90_RS09950 () | 2190776..2191990 | - | 1215 | WP_038246004.1 | DUF1983 domain-containing protein | - |
| CLC90_RS09955 () | 2191987..2193615 | - | 1629 | WP_096823441.1 | hypothetical protein | - |
| CLC90_RS09960 () | 2193893..2194372 | + | 480 | Protein_1915 | Hcp family type VI secretion system effector | - |
| CLC90_RS17690 () | 2194494..2194640 | - | 147 | WP_157836125.1 | hypothetical protein | - |
| CLC90_RS09965 () | 2195025..2197394 | - | 2370 | WP_096823442.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CLC90_RS09970 () | 2197391..2198044 | - | 654 | WP_096823443.1 | hypothetical protein | - |
| CLC90_RS09975 () | 2198044..2198631 | - | 588 | WP_096823444.1 | hypothetical protein | - |
| CLC90_RS09980 () | 2198634..2199074 | - | 441 | WP_038245291.1 | hypothetical protein | - |
| CLC90_RS09985 () | 2199129..2199512 | - | 384 | WP_096823445.1 | hypothetical protein | - |
| CLC90_RS09990 () | 2199575..2200798 | - | 1224 | WP_038245287.1 | N4-gp56 family major capsid protein | - |
| CLC90_RS09995 () | 2200859..2201911 | - | 1053 | WP_096823446.1 | hypothetical protein | - |
| CLC90_RS10000 () | 2202182..2204308 | - | 2127 | WP_096823447.1 | portal protein | - |
| CLC90_RS10005 () | 2204308..2205972 | - | 1665 | WP_096823679.1 | terminase | - |
| CLC90_RS10010 () | 2206011..2206868 | - | 858 | WP_096823448.1 | terminase | - |
| CLC90_RS10015 () | 2206934..2207278 | - | 345 | WP_051847063.1 | hypothetical protein | - |
| CLC90_RS10020 () | 2207275..2207817 | - | 543 | WP_096823449.1 | DUF2570 domain-containing protein | - |
| CLC90_RS10025 () | 2207949..2208437 | - | 489 | WP_096823450.1 | lysozyme | - |
| CLC90_RS10030 () | 2208437..2208649 | - | 213 | WP_038245276.1 | class II holin family protein | - |
| CLC90_RS10035 () | 2208822..2209631 | - | 810 | WP_096823451.1 | hypothetical protein | - |
| CLC90_RS10040 () | 2209722..2210105 | - | 384 | WP_096823452.1 | hypothetical protein | - |
| CLC90_RS10045 () | 2210130..2210600 | - | 471 | WP_096823453.1 | VRR-NUC domain-containing protein | - |
| CLC90_RS10050 () | 2210593..2210925 | - | 333 | WP_096823454.1 | DUF1364 domain-containing protein | - |
| CLC90_RS10055 () | 2210927..2211574 | - | 648 | WP_096823455.1 | DUF1367 family protein | - |
| CLC90_RS10060 () | 2211571..2213583 | - | 2013 | WP_096823456.1 | DNA cytosine methyltransferase | - |
| CLC90_RS10065 () | 2213580..2214506 | - | 927 | WP_096823457.1 | site-specific DNA-methyltransferase | - |
| CLC90_RS10070 () | 2214503..2214850 | - | 348 | WP_096823458.1 | hypothetical protein | - |
| CLC90_RS10075 () | 2214850..2215986 | - | 1137 | WP_096823459.1 | recombination-associated protein RdgC | - |
| CLC90_RS10080 () | 2215990..2216763 | - | 774 | WP_096823460.1 | hypothetical protein | - |
| CLC90_RS10085 () | 2216766..2217611 | - | 846 | WP_096823461.1 | hypothetical protein | - |
| CLC90_RS10090 () | 2217620..2217799 | - | 180 | WP_096823462.1 | hypothetical protein | - |
| CLC90_RS10095 () | 2217796..2218158 | - | 363 | WP_096823463.1 | hypothetical protein | - |
| CLC90_RS10100 () | 2218244..2218549 | + | 306 | WP_038243388.1 | hypothetical protein | - |
| CLC90_RS10105 () | 2218631..2218897 | - | 267 | WP_096823464.1 | hypothetical protein | - |
| CLC90_RS10110 () | 2219007..2219678 | + | 672 | WP_096823465.1 | helix-turn-helix domain-containing protein | - |
| CLC90_RS10115 () | 2219694..2220044 | + | 351 | WP_096823466.1 | hypothetical protein | - |
| CLC90_RS10120 () | 2220318..2220563 | + | 246 | WP_126940131.1 | hypothetical protein | - |
| CLC90_RS10125 () | 2220646..2220915 | + | 270 | WP_096823468.1 | KTSC domain-containing protein | - |
| CLC90_RS10130 () | 2220955..2221425 | + | 471 | WP_096823469.1 | hypothetical protein | - |
| CLC90_RS10135 () | 2221441..2221767 | + | 327 | WP_126940132.1 | hypothetical protein | - |
| CLC90_RS10140 () | 2222110..2222913 | + | 804 | WP_096823680.1 | phage recombination protein Bet | - |
| CLC90_RS10145 () | 2222900..2224504 | + | 1605 | WP_096823471.1 | YqaJ viral recombinase family protein | - |
| CLC90_RS10150 () | 2224549..2225688 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| CLC90_RS10155 () | 2225685..2226113 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| CLC90_RS17800 () | 2226178..2227014 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| CLC90_RS17780 () | 2227158..2227331 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| CLC90_RS10165 () | 2227522..2227776 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| CLC90_RS10170 () | 2227893..2228162 | + | 270 | WP_096823474.1 | excisionase | - |
| CLC90_RS10175 () | 2228137..2229246 | + | 1110 | WP_162486764.1 | tyrosine-type recombinase/integrase | - |
| - () | 2229319..2229465 | + | 147 | - | - | Antitoxin Detail |
| - () | 2229323..2229416 | - | 94 | - | - | Toxin Detail |
| CLC90_RS10180 () | 2229575..2229916 | - | 342 | WP_004721721.1 | YebY family protein | - |
| CLC90_RS10185 () | 2230011..2230895 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| CLC90_RS10190 () | 2230897..2231283 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| CLC90_RS10195 () | 2231688..2232203 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| CLC90_RS10200 () | 2232606..2232836 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| CLC90_RS10205 () | 2232959..2233909 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|