MGE detailed information
MGE type: Prophage MGE length: 115931 bp
Accession: NZ_CP023165 Location: 1327257..1443187 Organism: Escherichia coli O22:H8 strain RM10809-3 Replicon: chromosome
Accession: NZ_CP023165 Location: 1327257..1443187 Organism: Escherichia coli O22:H8 strain RM10809-3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLC88_RS06945 () | 1323164..1324363 | + | 1200 | WP_000284714.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| CLC88_RS06950 () | 1324356..1325057 | + | 702 | WP_001033695.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| CLC88_RS06955 () | 1325057..1326301 | + | 1245 | WP_001251389.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| CLC88_RS06960 () | 1326330..1327241 | + | 912 | WP_032141806.1 | N-acetylglucosamine kinase | - |
| CLC88_RS06965 () | 1327257..1328078 | + | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| CLC88_RS06970 () | 1328217..1329005 | - | 789 | WP_000713472.1 | TPM domain-containing protein | - |
| CLC88_RS06975 () | 1329002..1329463 | - | 462 | WP_000076381.1 | DUF3592 domain-containing protein | - |
| CLC88_RS06980 () | 1329521..1330567 | - | 1047 | WP_000759317.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| CLC88_RS06985 () | 1330564..1331358 | - | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| CLC88_RS06990 () | 1331525..1332643 | - | 1119 | WP_022581818.1 | hypothetical protein ; Integrase | Integrase |
| CLC88_RS06995 () | 1332612..1332881 | - | 270 | WP_000003742.1 | excisionase | - |
| CLC88_RS07000 () | 1332943..1335345 | - | 2403 | WP_022581375.1 | exonuclease | - |
| CLC88_RS07005 () | 1335438..1335626 | - | 189 | WP_022581374.1 | DUF1482 family protein | - |
| CLC88_RS07010 () | 1335623..1335811 | - | 189 | WP_000450222.1 | cell division inhibitor | - |
| CLC88_RS07020 () | 1336596..1336964 | - | 369 | WP_028985920.1 | hypothetical protein | - |
| CLC88_RS07025 () | 1336976..1337128 | - | 153 | WP_000380321.1 | DUF1391 family protein | - |
| CLC88_RS07030 () | 1337400..1337687 | - | 288 | WP_001444087.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CLC88_RS07035 () | 1337691..1337879 | - | 189 | WP_001090455.1 | hypothetical protein | Antitoxin Detail |
| CLC88_RS07040 () | 1337909..1338307 | - | 399 | WP_000209117.1 | helix-turn-helix domain-containing protein | - |
| CLC88_RS07045 () | 1338424..1338702 | + | 279 | WP_155704953.1 | IS481 family transposase ISStag2 | Transposase |
| CLC88_RS07050 () | 1338686..1339207 | + | 522 | WP_000705386.1 | hypothetical protein | - |
| CLC88_RS07055 () | 1339188..1340153 | + | 966 | WP_000054520.1 | hypothetical protein | - |
| CLC88_RS07060 () | 1340160..1340900 | + | 741 | WP_000790459.1 | ATP-binding protein | - |
| CLC88_RS07065 () | 1340930..1341691 | + | 762 | WP_064506729.1 | DUF1627 domain-containing protein | - |
| CLC88_RS07070 () | 1341724..1342005 | + | 282 | WP_072094476.1 | DNA-binding protein | - |
| CLC88_RS07075 () | 1342002..1342307 | + | 306 | WP_053294093.1 | DUF4406 domain-containing protein | - |
| CLC88_RS07080 () | 1342455..1342637 | + | 183 | WP_001224672.1 | hypothetical protein | - |
| CLC88_RS25645 () | 1342630..1342806 | + | 177 | WP_032295776.1 | hypothetical protein | - |
| CLC88_RS07085 () | 1342803..1343318 | + | 516 | WP_001289995.1 | hypothetical protein | - |
| CLC88_RS07090 () | 1343609..1343764 | + | 156 | WP_000813246.1 | type I toxin-antitoxin system Hok family toxin | - |
| CLC88_RS07095 () | 1343931..1344203 | + | 273 | WP_001341173.1 | hypothetical protein | - |
| CLC88_RS07100 () | 1344205..1345254 | + | 1050 | WP_155704955.1 | DUF968 domain-containing protein | - |
| CLC88_RS07105 () | 1345273..1345653 | + | 381 | WP_001204809.1 | antitermination protein Q | - |
| CLC88_RS07110 () | 1345869..1346066 | + | 198 | WP_000917756.1 | hypothetical protein | - |
| CLC88_RS07115 () | 1346217..1347275 | + | 1059 | WP_155704957.1 | site-specific DNA-methyltransferase | - |
| CLC88_RS07135 () | 1347658..1348617 | + | 960 | WP_001365055.1 | Shiga toxin subunit A | VF |
| CLC88_RS07140 () | 1348629..1348898 | + | 270 | WP_000738080.1 | Shiga toxin subunit B | VF |
| CLC88_RS07145 () | 1349410..1351356 | + | 1947 | WP_155704958.1 | DUF1737 domain-containing protein | - |
| CLC88_RS07150 () | 1351492..1351671 | + | 180 | WP_000143458.1 | DUF1378 family protein | - |
| CLC88_RS07155 () | 1351712..1351957 | + | 246 | WP_001290230.1 | DUF826 domain-containing protein | - |
| CLC88_RS07160 () | 1352035..1352250 | + | 216 | WP_000284490.1 | class II holin family protein | - |
| CLC88_RS07165 () | 1352254..1353045 | + | 792 | WP_001041949.1 | DUF1327 domain-containing protein | - |
| CLC88_RS07170 () | 1353557..1354090 | + | 534 | WP_001092872.1 | lysozyme | - |
| CLC88_RS25650 () | 1354389..1354856 | + | 468 | WP_196497616.1 | lysis protein | - |
| CLC88_RS07185 () | 1355309..1355785 | + | 477 | WP_000348556.1 | DUF1441 family protein | - |
| CLC88_RS07190 () | 1355782..1357905 | + | 2124 | WP_001077608.1 | phage terminase large subunit family protein | - |
| CLC88_RS07195 () | 1357902..1358114 | + | 213 | WP_000102415.1 | hypothetical protein | - |
| CLC88_RS07200 () | 1358114..1359616 | + | 1503 | WP_000974564.1 | phage portal protein | - |
| CLC88_RS25655 () | 1359561..1361584 | + | 2024 | Protein_1282 | ATP-dependent Clp protease proteolytic subunit | VF |
| CLC88_RS07215 () | 1361672..1361998 | + | 327 | WP_001097058.1 | DUF2190 family protein | - |
| CLC88_RS07220 () | 1361991..1362272 | + | 282 | WP_022581878.1 | DNA breaking-rejoining protein | - |
| CLC88_RS07225 () | 1362275..1362898 | + | 624 | WP_022581879.1 | phage tail protein | - |
| CLC88_RS07230 () | 1362911..1363309 | + | 399 | WP_001561860.1 | hypothetical protein | - |
| CLC88_RS07235 () | 1363317..1364066 | + | 750 | WP_022581880.1 | phage tail protein | - |
| CLC88_RS07240 () | 1364082..1364504 | + | 423 | WP_000479054.1 | phage minor tail protein G | - |
| CLC88_RS07245 () | 1364531..1364839 | + | 309 | WP_000532076.1 | phage tail assembly protein T | - |
| CLC88_RS07250 () | 1364883..1367531 | + | 2649 | WP_137525256.1 | phage tail tape measure protein | - |
| CLC88_RS07255 () | 1367528..1367857 | + | 330 | WP_000847298.1 | phage tail protein | - |
| CLC88_RS07260 () | 1367857..1368555 | + | 699 | WP_096844746.1 | phage minor tail protein L | - |
| CLC88_RS07265 () | 1368566..1369309 | + | 744 | WP_096097145.1 | C40 family peptidase | - |
| CLC88_RS07270 () | 1369255..1369887 | + | 633 | WP_122995511.1 | tail assembly protein | - |
| CLC88_RS07275 () | 1370311..1374006 | + | 3696 | WP_155704960.1 | DUF1983 domain-containing protein | - |
| CLC88_RS07280 () | 1374075..1374698 | + | 624 | WP_001270059.1 | Attachment invasion locus protein | VF |
| CLC88_RS07285 () | 1374850..1376754 | + | 1905 | WP_155704962.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CLC88_RS07290 () | 1377022..1377351 | - | 330 | WP_022581964.1 | YkgJ family cysteine cluster protein | - |
| CLC88_RS07295 () | 1377693..1378811 | - | 1119 | WP_000074988.1 | hypothetical protein ; Integrase | Integrase |
| CLC88_RS07300 () | 1378780..1379049 | - | 270 | WP_000003742.1 | excisionase | - |
| CLC88_RS07305 () | 1379111..1381582 | - | 2472 | WP_047081627.1 | exonuclease | - |
| CLC88_RS07310 () | 1381678..1381866 | - | 189 | WP_000199480.1 | DUF1482 family protein | - |
| CLC88_RS07315 () | 1381863..1382051 | - | 189 | WP_000449172.1 | cell division inhibitor | - |
| CLC88_RS07320 () | 1382873..1383130 | - | 258 | WP_122993314.1 | hypothetical protein | - |
| CLC88_RS07325 () | 1383603..1384247 | - | 645 | WP_000444611.1 | LexA family transcriptional regulator | - |
| CLC88_RS07330 () | 1384346..1384573 | + | 228 | WP_001261756.1 | cell division protein | - |
| CLC88_RS07335 () | 1384570..1384995 | + | 426 | WP_000693921.1 | Rha family transcriptional regulator | - |
| CLC88_RS07340 () | 1385064..1386095 | + | 1032 | WP_001262404.1 | hypothetical protein | - |
| CLC88_RS07345 () | 1386007..1386549 | + | 543 | WP_074435815.1 | replication protein | - |
| CLC88_RS07350 () | 1386583..1387308 | + | 726 | WP_000450642.1 | DUF1627 domain-containing protein | - |
| CLC88_RS07355 () | 1387324..1387758 | + | 435 | WP_001151140.1 | DUF977 family protein | - |
| CLC88_RS07360 () | 1387763..1388044 | + | 282 | WP_024200898.1 | helix-turn-helix domain-containing protein | - |
| CLC88_RS07365 () | 1388041..1388340 | + | 300 | WP_029374881.1 | DUF4406 domain-containing protein | - |
| CLC88_RS07370 () | 1388369..1388524 | + | 156 | WP_001373171.1 | hypothetical protein | - |
| CLC88_RS07375 () | 1388521..1388832 | + | 312 | WP_000991478.1 | hypothetical protein | - |
| CLC88_RS07380 () | 1388962..1389180 | + | 219 | WP_000829416.1 | hypothetical protein | - |
| CLC88_RS07385 () | 1389170..1389565 | + | 396 | WP_000651124.1 | hypothetical protein | - |
| CLC88_RS07390 () | 1389770..1390069 | - | 300 | WP_000220600.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CLC88_RS07395 () | 1390075..1390332 | - | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CLC88_RS07400 () | 1390468..1390740 | + | 273 | WP_047090793.1 | hypothetical protein | - |
| CLC88_RS07405 () | 1390742..1391791 | + | 1050 | WP_024200897.1 | DUF968 domain-containing protein | - |
| CLC88_RS07410 () | 1391804..1392178 | + | 375 | WP_001258479.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CLC88_RS07415 () | 1392175..1392996 | + | 822 | WP_000762906.1 | antitermination protein | - |
| CLC88_RS07435 () | 1393482..1394441 | + | 960 | WP_001365055.1 | Shiga toxin subunit A | VF |
| CLC88_RS07440 () | 1394453..1394722 | + | 270 | WP_000738080.1 | Shiga toxin subunit B | VF |
| CLC88_RS07445 () | 1395234..1397180 | + | 1947 | WP_096098178.1 | DUF1737 domain-containing protein | - |
| CLC88_RS07450 () | 1397316..1397495 | + | 180 | WP_000143462.1 | DUF1378 family protein | - |
| CLC88_RS07455 () | 1397536..1397808 | + | 273 | WP_001290207.1 | DUF826 domain-containing protein | - |
| CLC88_RS07460 () | 1397889..1398104 | + | 216 | WP_000284490.1 | class II holin family protein | - |
| CLC88_RS07465 () | 1398108..1398899 | + | 792 | WP_096098192.1 | DUF1327 domain-containing protein | - |
| CLC88_RS07470 () | 1399411..1399944 | + | 534 | WP_001092874.1 | lysozyme | - |
| CLC88_RS07475 () | 1400101..1400283 | + | 183 | WP_062896309.1 | hypothetical protein | - |
| CLC88_RS07480 () | 1400441..1400899 | + | 459 | WP_000947214.1 | lysis protein | - |
| CLC88_RS07485 () | 1401011..1401625 | + | 615 | WP_000881332.1 | Rha family transcriptional regulator | - |
| CLC88_RS07490 () | 1402076..1402552 | + | 477 | WP_000348556.1 | DUF1441 family protein | - |
| CLC88_RS07495 () | 1402549..1404672 | + | 2124 | WP_047090813.1 | phage terminase large subunit family protein | - |
| CLC88_RS07500 () | 1404669..1404881 | + | 213 | WP_000102416.1 | hypothetical protein | - |
| CLC88_RS07505 () | 1404881..1406383 | + | 1503 | WP_000974567.1 | phage portal protein | - |
| CLC88_RS25660 () | 1406373..1408350 | + | 1978 | Protein_1339 | ATP-dependent Clp protease proteolytic subunit | VF |
| CLC88_RS07520 () | 1408438..1408764 | + | 327 | WP_001097065.1 | DUF2190 family protein | - |
| CLC88_RS07525 () | 1408757..1409038 | + | 282 | WP_001281346.1 | DNA breaking-rejoining protein | - |
| CLC88_RS07530 () | 1409041..1409664 | + | 624 | WP_047082262.1 | phage tail protein | - |
| CLC88_RS07535 () | 1409677..1410075 | + | 399 | WP_000682716.1 | tail protein | - |
| CLC88_RS07545 () | 1410206..1410832 | + | 627 | WP_155704965.1 | phage tail protein | - |
| CLC88_RS07550 () | 1410852..1411283 | + | 432 | WP_000479069.1 | phage minor tail protein G | - |
| CLC88_RS07555 () | 1411310..1411714 | + | 405 | WP_047090811.1 | phage tail assembly protein T | - |
| CLC88_RS07560 () | 1411704..1414316 | + | 2613 | WP_155704967.1 | phage tail tape measure protein | - |
| CLC88_RS07565 () | 1414313..1414642 | + | 330 | WP_000847280.1 | phage tail protein | - |
| CLC88_RS07570 () | 1414642..1415340 | + | 699 | WP_137547722.1 | phage minor tail protein L | - |
| CLC88_RS07575 () | 1415351..1416094 | + | 744 | WP_155704969.1 | C40 family peptidase | - |
| CLC88_RS07580 () | 1416040..1416672 | + | 633 | WP_123130847.1 | tail assembly protein | - |
| CLC88_RS07585 () | 1416923..1420596 | + | 3674 | Protein_1352 | DUF1983 domain-containing protein | - |
| CLC88_RS07590 () | 1420795..1420935 | + | 141 | WP_000078855.1 | Hok/Gef family protein | - |
| CLC88_RS07595 () | 1421080..1422792 | + | 1713 | WP_155704971.1 | ISNCY family transposase KIS | Transposase |
| CLC88_RS07600 () | 1422802..1423014 | + | 213 | WP_047083776.1 | tail fiber assembly protein | - |
| CLC88_RS07605 () | 1423026..1423700 | + | 675 | WP_001373129.1 | DUF4376 domain-containing protein | - |
| CLC88_RS07610 () | 1423864..1424193 | - | 330 | WP_022581964.1 | YkgJ family cysteine cluster protein | - |
| CLC88_RS07615 () | 1424357..1425220 | - | 864 | WP_000799399.1 | spermidine/putrescine ABC transporter permease PotB | - |
| CLC88_RS07620 () | 1425204..1426340 | - | 1137 | WP_000531601.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| CLC88_RS07625 () | 1426590..1427816 | + | 1227 | WP_000359457.1 | peptidase T | - |
| CLC88_RS07630 () | 1427865..1428986 | - | 1122 | WP_001295435.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| CLC88_RS07635 () | 1429235..1430464 | + | 1230 | WP_000085265.1 | Prophage integrase IntS ; Integrase | Integrase |
| CLC88_RS07640 () | 1430839..1431027 | + | 189 | WP_000953271.1 | AlpA family transcriptional regulator | - |
| CLC88_RS25665 () | 1431304..1431507 | - | 204 | WP_000182306.1 | hypothetical protein | - |
| CLC88_RS25670 () | 1431565..1431744 | - | 180 | WP_000190458.1 | hypothetical protein | - |
| CLC88_RS07650 () | 1432306..1432485 | - | 180 | WP_000201463.1 | hypothetical protein | - |
| CLC88_RS07655 () | 1432678..1433241 | + | 564 | WP_001398590.1 | host cell division inhibitor Icd-like protein | - |
| CLC88_RS07660 () | 1433228..1433428 | + | 201 | WP_032279725.1 | hypothetical protein | - |
| CLC88_RS07665 () | 1433434..1433733 | + | 300 | WP_155704974.1 | DUF4222 domain-containing protein | - |
| CLC88_RS07670 () | 1433730..1435127 | + | 1398 | WP_000833612.1 | helicase RepA family protein | - |
| CLC88_RS07675 () | 1435318..1435581 | + | 264 | WP_169289296.1 | hypothetical protein | - |
| CLC88_RS07680 () | 1435578..1435988 | + | 411 | WP_032270474.1 | single-stranded DNA-binding protein | - |
| CLC88_RS07685 () | 1435999..1436247 | + | 249 | WP_000233314.1 | PerC family transcriptional regulator | - |
| CLC88_RS07690 () | 1436551..1437708 | + | 1158 | WP_096936647.1 | phage major capsid protein | - |
| CLC88_RS07695 () | 1437748..1438320 | + | 573 | WP_000504056.1 | HK97 family phage prohead protease | - |
| CLC88_RS07700 () | 1438322..1439533 | + | 1212 | WP_000267605.1 | phage portal protein | - |
| CLC88_RS07705 () | 1439530..1439868 | + | 339 | WP_001020659.1 | phage head closure protein | - |
| CLC88_RS07710 () | 1439865..1440161 | + | 297 | WP_000134113.1 | head-tail connector protein | - |
| CLC88_RS07715 () | 1440161..1440601 | + | 441 | WP_001145905.1 | HNH endonuclease | - |
| CLC88_RS25675 () | 1440585..1440767 | + | 183 | WP_000174068.1 | hypothetical protein | - |
| CLC88_RS07720 () | 1440891..1441247 | + | 357 | WP_000113645.1 | phage terminase small subunit P27 family | - |
| CLC88_RS07725 () | 1441231..1442892 | + | 1662 | WP_096936649.1 | terminase large subunit | - |
| CLC88_RS07730 () | 1442906..1443187 | + | 282 | WP_052909548.1 | hypothetical protein | - |
| CLC88_RS07735 () | 1443854..1445314 | - | 1461 | WP_000735406.1 | two-component system sensor histidine kinase PhoQ | - |
| CLC88_RS07740 () | 1445314..1445985 | - | 672 | WP_001265481.1 | two-component system response regulator PhoP | - |
| CLC88_RS07745 () | 1446153..1447523 | - | 1371 | WP_000423729.1 | adenylosuccinate lyase | - |
| CLC88_RS07750 () | 1447527..1448168 | - | 642 | WP_001297479.1 | high frequency lysogenization protein HflD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|