MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 96701 bp
Accession: NZ_CP023046 Location: 1465391..1562091 Organism: Mannheimia haemolytica strain USDA-ARS-USMARC-187 Replicon: chromosome
Accession: NZ_CP023046 Location: 1465391..1562091 Organism: Mannheimia haemolytica strain USDA-ARS-USMARC-187 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKG21_RS07470 () | 1460907..1461434 | + | 528 | WP_006250261.1 | DUF551 domain-containing protein | - |
| CKG21_RS07475 () | 1461431..1461634 | + | 204 | WP_006250262.1 | hypothetical protein | - |
| CKG21_RS07480 () | 1461618..1462082 | + | 465 | WP_006250263.1 | MazG-like family protein | - |
| CKG21_RS07485 () | 1462086..1462274 | - | 189 | WP_006253371.1 | hypothetical protein | - |
| CKG21_RS07490 () | 1462466..1462684 | + | 219 | Protein_1436 | KilA-N domain-containing protein | - |
| CKG21_RS07495 () | 1462736..1462951 | - | 216 | WP_006247827.1 | hypothetical protein | - |
| CKG21_RS07500 () | 1463496..1464197 | + | 702 | WP_006253375.1 | hypothetical protein | - |
| CKG21_RS14350 () | 1464451..1464627 | + | 177 | WP_006247825.1 | hypothetical protein | - |
| CKG21_RS07505 () | 1464715..1465098 | + | 384 | WP_006247824.1 | hypothetical protein | - |
| CKG21_RS07510 () | 1465148..1465369 | + | 222 | WP_006247823.1 | DUF4224 domain-containing protein | - |
| CKG21_RS07515 () | 1465391..1466431 | + | 1041 | WP_006247822.1 | hypothetical protein ; Integrase | Integrase |
| CKG21_RS07520 () | 1466590..1466877 | - | 288 | WP_006247821.1 | 50S ribosomal protein L25 | - |
| CKG21_RS07525 () | 1467029..1468297 | - | 1269 | WP_006247820.1 | malic enzyme | - |
| CKG21_RS07530 () | 1468454..1469365 | - | 912 | WP_006247818.1 | RimK family alpha-L-glutamate ligase | - |
| CKG21_RS07535 () | 1469362..1470081 | - | 720 | WP_006247817.1 | oxygen-insensitive NADPH nitroreductase | - |
| CKG21_RS07540 () | 1470093..1470878 | - | 786 | WP_006250687.1 | monofunctional biosynthetic peptidoglycan transglycosylase | - |
| CKG21_RS07545 () | 1470853..1471173 | - | 321 | WP_006247815.1 | trp operon repressor | - |
| CKG21_RS07550 () | 1471253..1471894 | - | 642 | WP_006247814.1 | outer membrane lipoprotein chaperone LolA | - |
| CKG21_RS07555 () | 1472005..1474863 | - | 2859 | WP_006247813.1 | DNA polymerase I | - |
| CKG21_RS07560 () | 1475148..1475441 | - | 294 | WP_006247812.1 | hypothetical protein | - |
| CKG21_RS07565 () | 1475585..1475974 | + | 390 | WP_015484247.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CKG21_RS07570 () | 1475946..1476245 | + | 300 | WP_006247810.1 | XRE family transcriptional regulator | - |
| CKG21_RS14190 () | 1476254..1476412 | - | 159 | WP_006247809.1 | hypothetical protein | - |
| CKG21_RS14475 () | 1476422..1477489 | - | 1068 | WP_006253284.1 | hypothetical protein | - |
| CKG21_RS07585 () | 1477510..1477710 | - | 201 | WP_006248825.1 | helix-turn-helix domain-containing protein | - |
| CKG21_RS07590 () | 1477841..1478524 | + | 684 | WP_006248824.1 | helix-turn-helix transcriptional regulator | - |
| CKG21_RS07595 () | 1478599..1478979 | + | 381 | WP_006248823.1 | hypothetical protein | - |
| CKG21_RS07600 () | 1478984..1479469 | + | 486 | WP_015484250.1 | hypothetical protein | - |
| CKG21_RS07605 () | 1479601..1479783 | + | 183 | WP_006250075.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| CKG21_RS07610 () | 1479822..1480241 | + | 420 | WP_006250074.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| CKG21_RS07615 () | 1480577..1481221 | + | 645 | WP_006253274.1 | hypothetical protein ; Integrase | Integrase |
| CKG21_RS07620 () | 1481359..1482405 | + | 1047 | WP_020849882.1 | IS481 family transposase ISShes15 | Transposase |
| CKG21_RS07625 () | 1482454..1484685 | - | 2232 | WP_006253498.1 | Autotransporter adhesin UpaG | VF |
| CKG21_RS07630 () | 1484879..1486108 | - | 1230 | WP_006248069.1 | alanine--glyoxylate aminotransferase family protein | - |
| CKG21_RS07635 () | 1486381..1488174 | + | 1794 | WP_006253499.1 | translation elongation factor 4 | - |
| CKG21_RS07640 () | 1488261..1489220 | + | 960 | WP_006248071.1 | signal peptidase I | - |
| CKG21_RS07645 () | 1489266..1489940 | + | 675 | WP_006248072.1 | ribonuclease III | - |
| CKG21_RS07650 () | 1490043..1490960 | + | 918 | WP_006248073.1 | GTPase Era | - |
| CKG21_RS07655 () | 1491190..1491912 | + | 723 | WP_006248074.1 | DNA repair protein RecO | - |
| CKG21_RS07660 () | 1492000..1493235 | + | 1236 | WP_006248075.1 | ATP-dependent RNA helicase RhlB | - |
| CKG21_RS07665 () | 1493294..1494784 | + | 1491 | WP_006248076.1 | DUF853 domain-containing protein | - |
| CKG21_RS07670 () | 1494846..1495472 | - | 627 | WP_006248077.1 | DsbA family oxidoreductase | - |
| CKG21_RS07675 () | 1495482..1496492 | - | 1011 | WP_006248078.1 | Fe(3+) ions import ATP-binding protein FbpC | VF |
| CKG21_RS07680 () | 1496502..1498148 | - | 1647 | WP_006248079.1 | iron ABC transporter permease | - |
| CKG21_RS07685 () | 1498271..1499299 | - | 1029 | WP_006253500.1 | Fe(3+) ABC transporter substrate-binding protein | - |
| CKG21_RS07690 () | 1499644..1500363 | + | 720 | WP_061888708.1 | 30S ribosomal protein S2 | - |
| CKG21_RS07695 () | 1500459..1501310 | + | 852 | WP_006248082.1 | elongation factor Ts | - |
| CKG21_RS07700 () | 1501374..1502936 | - | 1563 | WP_006248083.1 | phosphoethanolamine transferase | - |
| CKG21_RS07705 () | 1503028..1503744 | + | 717 | WP_006248084.1 | UMP kinase | - |
| CKG21_RS07710 () | 1503796..1504353 | + | 558 | WP_006248085.1 | ribosome recycling factor | - |
| CKG21_RS07715 () | 1504490..1505173 | - | 684 | WP_006248086.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| CKG21_RS07720 () | 1505341..1506504 | + | 1164 | WP_095586242.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| CKG21_RS07725 () | 1506505..1507350 | + | 846 | WP_006248088.1 | divergent polysaccharide deacetylase family protein | - |
| CKG21_RS07730 () | 1507362..1509197 | + | 1836 | WP_006248089.1 | autotransporter assembly complex protein TamA | - |
| CKG21_RS07735 () | 1509278..1513375 | + | 4098 | WP_006253502.1 | translocation/assembly module TamB | - |
| CKG21_RS07740 () | 1513490..1515256 | + | 1767 | WP_006248092.1 | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | - |
| CKG21_RS07745 () | 1515256..1516920 | + | 1665 | WP_006248093.1 | cysteine/glutathione ABC transporter ATP-binding protein/permease CydC | - |
| CKG21_RS07750 () | 1517052..1517681 | + | 630 | WP_006248094.1 | high frequency lysogenization protein HflD | - |
| CKG21_RS07755 () | 1517715..1519082 | + | 1368 | WP_006248095.1 | adenylosuccinate lyase | - |
| CKG21_RS07760 () | 1519149..1519910 | + | 762 | WP_006248096.1 | DeoR/GlpR family transcriptional regulator | - |
| CKG21_RS07765 () | 1519903..1520778 | + | 876 | WP_006248097.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| CKG21_RS07775 () | 1521231..1523063 | + | 1833 | WP_006250663.1 | site-specific DNA-methyltransferase | - |
| CKG21_RS07780 () | 1523073..1525709 | + | 2637 | WP_006248098.1 | DEAD/DEAH box helicase family protein | - |
| CKG21_RS07785 () | 1525841..1528273 | + | 2433 | WP_006248099.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| CKG21_RS07790 () | 1528326..1529288 | - | 963 | WP_006248100.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| CKG21_RS07795 () | 1529385..1531148 | - | 1764 | WP_006253504.1 | 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO | - |
| CKG21_RS07800 () | 1531412..1533701 | + | 2290 | Protein_1498 | CRISPR-associated helicase/endonuclease Cas3 | - |
| CKG21_RS07805 () | 1533832..1534425 | + | 594 | WP_006248103.1 | hypothetical protein | - |
| CKG21_RS07810 () | 1534487..1534903 | - | 417 | WP_006253505.1 | IS200-IS605 family transposase ISAba30 | Transposase |
| CKG21_RS07815 () | 1534950..1536086 | + | 1137 | WP_006253506.1 | IS200-IS605 family transposase ISAba30 | Transposase |
| CKG21_RS07820 () | 1536245..1536706 | + | 462 | WP_134983790.1 | hypothetical protein | - |
| CKG21_RS07825 () | 1536696..1538447 | + | 1752 | Protein_1503 | DUF87 domain-containing protein | - |
| CKG21_RS07830 () | 1538689..1539366 | + | 678 | WP_006248107.1 | type I-C CRISPR-associated protein Cas5 | - |
| CKG21_RS07835 () | 1539388..1541169 | + | 1782 | WP_031192850.1 | type I-C CRISPR-associated protein Cas8c/Csd1 | - |
| CKG21_RS07840 () | 1541179..1542042 | + | 864 | WP_006248109.1 | type I-C CRISPR-associated protein Cas7/Csd2 | - |
| CKG21_RS07845 () | 1542042..1542716 | + | 675 | WP_006253509.1 | CRISPR-associated protein Cas4 | - |
| CKG21_RS07850 () | 1542743..1543663 | + | 921 | WP_006248111.1 | hypothetical protein | - |
| CKG21_RS07855 () | 1544060..1545073 | + | 1014 | WP_006248113.1 | type I-C CRISPR-associated endonuclease Cas1 | - |
| CKG21_RS07860 () | 1545140..1545433 | + | 294 | WP_006248114.1 | CRISPR-associated endonuclease Cas2 | - |
| CKG21_RS07865 () | 1546976..1548451 | + | 1476 | WP_006248118.1 | ribonuclease G | - |
| CKG21_RS07870 () | 1548605..1550107 | + | 1503 | WP_006248119.1 | lysine--tRNA ligase | - |
| CKG21_RS07875 () | 1550185..1551258 | - | 1074 | WP_006248812.1 | homoserine O-acetyltransferase | - |
| CKG21_RS07880 () | 1551526..1552209 | + | 684 | WP_006248814.1 | YdcF family protein | - |
| CKG21_RS07885 () | 1552246..1553084 | - | 839 | Protein_1515 | formyltetrahydrofolate deformylase | - |
| CKG21_RS07890 () | 1553154..1553555 | - | 402 | WP_006248816.1 | H-NS histone family protein | - |
| CKG21_RS07895 () | 1553992..1555524 | + | 1533 | WP_006253512.1 | Na+/H+ antiporter NhaC family protein | - |
| CKG21_RS07900 () | 1555750..1556502 | + | 753 | WP_006248819.1 | SDR family oxidoreductase | - |
| CKG21_RS07905 () | 1556514..1557704 | + | 1191 | WP_006248820.1 | tryptophan synthase subunit beta | - |
| CKG21_RS07910 () | 1557706..1558512 | + | 807 | WP_006248821.1 | Tryptophan synthase alpha chain ; Integrase | Integrase |
| CKG21_RS07915 () | 1558562..1559968 | + | 1407 | WP_006253513.1 | YdgA family protein | - |
| CKG21_RS07920 () | 1560035..1561075 | - | 1041 | WP_015586960.1 | IS481 family transposase ISShes15 | Transposase |
| CKG21_RS07930 () | 1561159..1562091 | - | 933 | WP_015587099.1 | IS481 family transposase ISVvu4 | Transposase |
| CKG21_RS07935 () | 1562333..1562773 | + | 441 | WP_006252769.1 | DoxX family protein | - |
| CKG21_RS07940 () | 1562799..1563086 | + | 288 | WP_006248065.1 | hypothetical protein | - |
| CKG21_RS07945 () | 1563187..1564110 | + | 924 | WP_006248064.1 | DUF692 family protein | - |
| CKG21_RS07950 () | 1564100..1564840 | + | 741 | WP_006248063.1 | putative DNA-binding domain-containing protein | - |
| CKG21_RS07955 () | 1565059..1565640 | + | 582 | Protein_1528 | sigma-70 family RNA polymerase sigma factor | - |
| CKG21_RS14200 () | 1565641..1565811 | + | 171 | WP_006248062.1 | zf-HC2 domain-containing protein | - |
| CKG21_RS07960 () | 1566079..1566372 | - | 294 | WP_006247812.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|