MGE detailed information
MGE type: Genomic_island MGE length: 21216 bp
Accession: NZ_CP022689 Location: 1358189..1379404 Organism: Escherichia coli strain CDC#03-98 Replicon: chromosome
Accession: NZ_CP022689 Location: 1358189..1379404 Organism: Escherichia coli strain CDC#03-98 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RM34_RS07580 () | 1353915..1354457 | + | 543 | WP_000934391.1 | hypothetical protein | - |
| RM34_RS07590 () | 1354750..1356900 | + | 2151 | WP_001298933.1 | pyruvate/proton symporter BtsT | - |
| RM34_RS07595 () | 1356950..1357153 | + | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
| RM34_RS07600 () | 1357164..1358120 | + | 957 | WP_001297640.1 | GTPase | - |
| RM34_RS07605 () | 1358189..1359547 | - | 1359 | WP_001304004.1 | DUF262 domain-containing protein | - |
| RM34_RS07610 () | 1359556..1359840 | - | 285 | WP_001304005.1 | DUF262 domain-containing protein | - |
| RM34_RS07615 () | 1360118..1362550 | + | 2433 | WP_000819018.1 | DEAD/DEAH box helicase family protein | - |
| RM34_RS07620 () | 1362617..1364086 | + | 1470 | WP_001302468.1 | type I restriction-modification system subunit M | - |
| RM34_RS07625 () | 1364086..1365840 | + | 1755 | WP_000110082.1 | restriction endonuclease subunit S | - |
| - () | 1365990..1366066 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 1365990..1366066 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 1365990..1366066 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 1365990..1366066 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 1365990..1366066 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| - () | 1365990..1366066 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| - () | 1365990..1366066 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| - () | 1365990..1366066 | - | 77 | NuclAT_16 | - | Antitoxin Detail |
| RM34_RS07630 () | 1366061..1366402 | + | 342 | WP_000132630.1 | endoribonuclease SymE | Toxin Detail |
| RM34_RS07635 () | 1366449..1367612 | - | 1164 | WP_001304006.1 | DUF1524 domain-containing protein | - |
| RM34_RS07640 () | 1367660..1368541 | - | 882 | WP_001304007.1 | DUF262 domain-containing protein | - |
| RM34_RS07645 () | 1368638..1368802 | - | 165 | WP_000394274.1 | DUF1127 domain-containing protein | - |
| RM34_RS07655 () | 1368979..1370391 | + | 1413 | WP_000199295.1 | PLP-dependent aminotransferase family protein | - |
| RM34_RS29900 () | 1370634..1370834 | - | 201 | WP_001310455.1 | hypothetical protein | - |
| RM34_RS07660 () | 1370839..1371591 | - | 753 | Protein_1288 | Recombination-promoting nuclease RpnD | VF |
| RM34_RS07665 () | 1372058..1373290 | + | 1233 | WP_001136983.1 | multidrug efflux MFS transporter MdtM | - |
| RM34_RS07670 () | 1373331..1374602 | + | 1272 | WP_001037406.1 | DUF445 domain-containing protein | - |
| RM34_RS07675 () | 1374718..1375869 | + | 1152 | WP_001302931.1 | 2-hydroxyacyl-CoA dehydratase subunit D | - |
| RM34_RS07680 () | 1375879..1376646 | + | 768 | WP_000222489.1 | hypothetical protein | - |
| RM34_RS07685 () | 1376643..1376909 | + | 267 | WP_000657677.1 | DUF3343 domain-containing protein | - |
| RM34_RS07690 () | 1377221..1379404 | + | 2184 | WP_000535060.1 | hypothetical protein | VF |
| RM34_RS07695 () | 1379670..1380512 | + | 843 | WP_000746206.1 | YjiK family protein | - |
| RM34_RS07700 () | 1380580..1381758 | + | 1179 | WP_001089435.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | NC_002655 | 5456776..5475497 | 0.003 | |||
| Escherichia coli O157:H7 str. Sakai | NC_002695 | 5426911..5445631 | 0.003 |