MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 87762 bp
Accession: NZ_CP022456 Location: 1..87762 Organism: Shigella sonnei strain 2015C-3794 Replicon: plasmid unnamed1
Accession: NZ_CP022456 Location: 1..87762 Organism: Shigella sonnei strain 2015C-3794 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9129_RS27940 (12) | 12..199 | - | 188 | Protein_0 | hypothetical protein | - |
| B9129_RS26425 (199) | 199..1113 | - | 915 | WP_000038348.1 | Recombination-promoting nuclease RpnA | VF |
| B9129_RS26430 (1110) | 1110..1499 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| B9129_RS26435 (1675) | 1675..1940 | - | 266 | Protein_3 | hypothetical protein | - |
| B9129_RS26440 (2034) | 2034..2468 | - | 435 | WP_000218858.1 | hypothetical protein | - |
| B9129_RS26455 (3194) | 3194..3694 | - | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| B9129_RS27945 (4156) | 4156..4751 | - | 596 | Protein_6 | hypothetical protein | - |
| B9129_RS26470 (4748) | 4748..5466 | - | 719 | Protein_7 | plasmid SOS inhibition protein A | - |
| B9129_RS26475 (5463) | 5463..5897 | - | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| B9129_RS26480 (5951) | 5951..7909 | - | 1959 | WP_001145488.1 | ParB/RepB/Spo0J family partition protein | - |
| B9129_RS26485 (7968) | 7968..8200 | - | 233 | Protein_10 | DUF905 domain-containing protein | - |
| B9129_RS26490 (8258) | 8258..8783 | - | 526 | Protein_11 | single-stranded DNA-binding protein | - |
| B9129_RS26495 (9166) | 9166..9480 | - | 315 | WP_005112260.1 | hypothetical protein | - |
| B9129_RS26500 (9551) | 9551..9742 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| B9129_RS26505 (9739) | 9739..10158 | - | 420 | WP_094112651.1 | DUF1380 family protein | - |
| B9129_RS26510 (10224) | 10224..11396 | + | 1173 | WP_000952428.1 | IS21 family transposase ISEc62 | Transposase |
| B9129_RS26515 (11396) | 11396..12190 | + | 795 | WP_000544809.1 | IS21 family transposase ISEc62 | Transposase |
| B9129_RS26520 (12337) | 12337..12762 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| B9129_RS27950 (13176) | 13176..13952 | - | 777 | WP_001005022.1 | hypothetical protein | - |
| B9129_RS26535 (13998) | 13998..14432 | - | 435 | WP_000274412.1 | DUF1380 family protein | - |
| B9129_RS26540 (14446) | 14446..14667 | - | 222 | WP_001104879.1 | hypothetical protein | - |
| B9129_RS26545 (14668) | 14668..15351 | - | 684 | WP_000086153.1 | DNA methylase | - |
| B9129_RS26550 (15428) | 15428..15739 | - | 312 | WP_001310011.1 | hypothetical protein | - |
| B9129_RS26555 (15736) | 15736..16662 | - | 927 | WP_001134370.1 | DUF1281 domain-containing protein | - |
| B9129_RS26565 (17057) | 17057..17305 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| B9129_RS26570 (17302) | 17302..17739 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| B9129_RS26575 (17739) | 17739..19010 | + | 1272 | WP_000457515.1 | Y-family DNA polymerase | - |
| B9129_RS26580 (19214) | 19214..19840 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| B9129_RS27955 (19837) | 19837..20139 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| B9129_RS26590 (20400) | 20400..21260 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| B9129_RS26595 (21443) | 21443..22000 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| B9129_RS26600 (22164) | 22164..22382 | + | 219 | WP_001143771.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| B9129_RS26605 (22564) | 22564..23826 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| B9129_RS26610 (24082) | 24082..24957 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| B9129_RS26615 (25004) | 25004..25297 | - | 294 | WP_116961751.1 | WbuC family cupin fold metalloprotein | - |
| B9129_RS26620 (25362) | 25362..28145 | + | 2784 | Protein_35 | Tn3 family transposase TnpA_Tn3 | Transposase |
| B9129_RS26630 (28633) | 28633..29979 | - | 1347 | WP_001132021.1 | protein YagA | - |
| B9129_RS26640 (30332) | 30332..30934 | + | 603 | WP_000517687.1 | ProQ/FINO family protein | - |
| B9129_RS26645 (30990) | 30990..31499 | + | 510 | WP_000045395.1 | hypothetical protein | - |
| B9129_RS26665 (32569) | 32569..33600 | - | 1032 | WP_000907869.1 | plasmid replication initiator RepA | - |
| B9129_RS27960 (34558) | 34558..34716 | + | 159 | Protein_40 | ash family protein | - |
| B9129_RS26685 (34754) | 34754..35041 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| B9129_RS26695 (35483) | 35483..36016 | + | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| B9129_RS26705 (36270) | 36270..36953 | + | 684 | WP_000213862.1 | conjugal transfer protein TraC | - |
| B9129_RS26710 (37125) | 37125..37379 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| B9129_RS26725 (38426) | 38426..39493 | + | 1068 | WP_001360287.1 | hypothetical protein | VF |
| B9129_RS26730 (39493) | 39493..39930 | + | 438 | WP_000539806.1 | hypothetical protein | VF |
| B9129_RS26735 (39944) | 39944..41626 | + | 1683 | WP_000748144.1 | Outer membrane lipoprotein BfpB | VF |
| B9129_RS26740 (41619) | 41619..42914 | + | 1296 | WP_000752782.1 | type 4b pilus protein PilO2 | - |
| B9129_RS26745 (42901) | 42901..43353 | + | 453 | WP_001247337.1 | hypothetical protein | VF |
| B9129_RS26750 (43364) | 43364..44917 | + | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| B9129_RS26755 (44930) | 44930..46015 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| B9129_RS26760 (46032) | 46032..46645 | + | 614 | Protein_52 | hypothetical protein | VF |
| B9129_RS26765 (46655) | 46655..47215 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| B9129_RS26770 (47200) | 47200..47856 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| B9129_RS26775 (47856) | 47856..49193 | + | 1338 | WP_094112652.1 | hypothetical protein | VF |
| B9129_RS26805 (50625) | 50625..51779 | + | 1155 | WP_001139956.1 | site-specific integrase | - |
| B9129_RS26810 (51930) | 51930..52754 | + | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| B9129_RS26815 (52840) | 52840..54042 | + | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| B9129_RS26820 (54102) | 54102..54686 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| B9129_RS26825 (55081) | 55081..55539 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| B9129_RS26830 (55536) | 55536..56354 | + | 819 | WP_000646098.1 | hypothetical protein | VF |
| B9129_RS26835 (56351) | 56351..57499 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| B9129_RS26840 (57496) | 57496..57786 | + | 291 | WP_001314267.1 | hypothetical protein | - |
| B9129_RS26845 (57801) | 57801..58352 | + | 552 | WP_000014586.1 | Phospholipase D | VF |
| B9129_RS26850 (58442) | 58442..62206 | + | 3765 | WP_001141540.1 | DUF5710 domain-containing protein | - |
| B9129_RS27965 (62224) | 62224..62570 | + | 347 | Protein_66 | conjugal transfer protein | - |
| B9129_RS26860 (62567) | 62567..63259 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| B9129_RS26865 (63270) | 63270..64253 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| B9129_RS26870 (64256) | 64256..65545 | + | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| B9129_RS26875 (65545) | 65545..66249 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| B9129_RS26880 (66249) | 66249..66776 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| B9129_RS26885 (66827) | 66827..67230 | + | 404 | Protein_72 | IncI1-type conjugal transfer protein TraR | - |
| B9129_RS26890 (67294) | 67294..67482 | + | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| B9129_RS26895 (67466) | 67466..68266 | + | 801 | WP_001164783.1 | IncI1-type conjugal transfer protein TraT | - |
| B9129_RS26900 (68356) | 68356..71400 | + | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| B9129_RS26905 (71400) | 71400..72014 | + | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| B9129_RS26910 (71981) | 71981..73183 | + | 1203 | WP_001387490.1 | IncI1-type conjugal transfer protein TraW | - |
| B9129_RS26915 (73212) | 73212..73796 | + | 585 | WP_001037983.1 | IncI1-type conjugal transfer protein TraX | - |
| B9129_RS26920 (73893) | 73893..76061 | + | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| B9129_RS26925 (76137) | 76137..76751 | + | 615 | WP_000578648.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| B9129_RS26930 (76849) | 76849..77058 | + | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| B9129_RS27970 (77241) | 77241..77417 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| B9129_RS26935 (77482) | 77482..77778 | - | 297 | WP_001275298.1 | DinQ-like type I toxin DqlB | - |
| B9129_RS26940 (78078) | 78078..78329 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| B9129_RS26945 (78401) | 78401..78553 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (78603) | 78603..78665 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (78603) | 78603..78665 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (78603) | 78603..78665 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (78603) | 78603..78665 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| B9129_RS26950 (78874) | 78874..79959 | + | 1086 | WP_000080543.1 | protein finQ | - |
| B9129_RS26955 (80266) | 80266..81474 | + | 1209 | WP_000121263.1 | hypothetical protein | VF |
| B9129_RS26960 (81493) | 81493..82563 | + | 1071 | WP_000151588.1 | IncI1-type conjugal transfer protein TrbB | - |
| B9129_RS26965 (82556) | 82556..84847 | + | 2292 | WP_001289278.1 | F-type conjugative transfer protein TrbC | - |
| B9129_RS26970 (84884) | 84884..87583 | - | 2700 | WP_001387486.1 | Protein TraI | Relaxase |
| B9129_RS26975 (87594) | 87594..87739 | - | 146 | Protein_91 | IncI1-type relaxosome accessory protein NikA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|