MGE detailed information
MGE type: Prophage MGE length: 65696 bp
Accession: NZ_CP022229 Location: 4618948..4684643 Organism: Escherichia coli strain WCHEC96200 Replicon: chromosome
Accession: NZ_CP022229 Location: 4618948..4684643 Organism: Escherichia coli strain WCHEC96200 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBR04_RS24345 () | 4615461..4616207 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| DBR04_RS24350 () | 4616296..4616982 | + | 687 | WP_000215553.1 | DNA-binding transcriptional regulator YdfH | - |
| DBR04_RS24355 () | 4617160..4617363 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DBR04_RS24360 () | 4617399..4618859 | - | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| DBR04_RS24365 () | 4618948..4620231 | - | 1284 | Protein_4285 | MHS family MFS transporter YdfJ | - |
| DBR04_RS24370 () | 4620835..4620948 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| DBR04_RS24375 () | 4621017..4621250 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| DBR04_RS24380 () | 4621567..4622157 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DBR04_RS24385 () | 4622255..4622365 | - | 111 | Protein_4289 | tail fiber assembly protein | - |
| DBR04_RS24390 () | 4622385..4622678 | - | 294 | WP_000355609.1 | hypothetical protein | - |
| DBR04_RS26935 () | 4622689..4622919 | - | 231 | WP_089634424.1 | phage tail protein | - |
| DBR04_RS24400 () | 4623403..4623684 | - | 282 | WP_000654154.1 | hypothetical protein | - |
| DBR04_RS24405 () | 4623681..4626080 | - | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DBR04_RS24410 () | 4626145..4626744 | - | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| DBR04_RS24415 () | 4626812..4630291 | - | 3480 | WP_021523093.1 | host specificity protein J | - |
| DBR04_RS24420 () | 4630352..4630954 | - | 603 | WP_049286672.1 | tail assembly protein | - |
| DBR04_RS24425 () | 4630891..4631634 | - | 744 | WP_032153655.1 | C40 family peptidase | - |
| DBR04_RS24430 () | 4631640..4632338 | - | 699 | WP_029702161.1 | phage minor tail protein L | - |
| DBR04_RS24435 () | 4632338..4632667 | - | 330 | WP_000847345.1 | phage tail protein | - |
| DBR04_RS24440 () | 4632664..4635225 | - | 2562 | WP_048219008.1 | phage tail tape measure protein | - |
| DBR04_RS24445 () | 4635218..4635652 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| DBR04_RS24450 () | 4635634..4636056 | - | 423 | WP_000479153.1 | phage minor tail protein G | - |
| DBR04_RS24455 () | 4636072..4636812 | - | 741 | WP_001349920.1 | phage tail protein | - |
| DBR04_RS24460 () | 4636820..4637215 | - | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| DBR04_RS24465 () | 4637212..4637790 | - | 579 | WP_000975070.1 | phage tail protein | - |
| DBR04_RS24470 () | 4637802..4638155 | - | 354 | WP_000752979.1 | head-tail joining protein | - |
| DBR04_RS24475 () | 4638167..4638565 | - | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| DBR04_RS24480 () | 4638607..4639632 | - | 1026 | WP_000063277.1 | major capsid protein | - |
| DBR04_RS24485 () | 4639687..4640019 | - | 333 | WP_001708751.1 | head decoration protein | - |
| DBR04_RS24490 () | 4640029..4641348 | - | 1320 | WP_020233915.1 | S49 family peptidase | - |
| DBR04_RS24495 () | 4641329..4642930 | - | 1602 | WP_001356819.1 | phage portal protein | - |
| DBR04_RS24500 () | 4642927..4643133 | - | 207 | WP_000198149.1 | gpW family protein | - |
| DBR04_RS24505 () | 4643130..4645055 | - | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| DBR04_RS24510 () | 4645030..4645575 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| DBR04_RS24515 () | 4645964..4646197 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| DBR04_RS24520 () | 4646255..4646665 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| DBR04_RS24525 () | 4646817..4646990 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| DBR04_RS24530 () | 4647162..4647317 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| DBR04_RS24535 () | 4647397..4647462 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| DBR04_RS24540 () | 4647465..4647653 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| DBR04_RS24545 () | 4647664..4647876 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| DBR04_RS24550 () | 4648239..4648736 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| DBR04_RS24555 () | 4648733..4649266 | - | 534 | WP_001092971.1 | lysozyme | - |
| DBR04_RS24560 () | 4649263..4649574 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| DBR04_RS24565 () | 4649579..4649794 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| DBR04_RS24575 () | 4650351..4650809 | - | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| DBR04_RS24580 () | 4651260..4651475 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| DBR04_RS24585 () | 4651776..4651988 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| DBR04_RS24590 () | 4652043..4652132 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| DBR04_RS24595 () | 4652410..4653162 | - | 753 | WP_001047135.1 | antitermination protein | - |
| DBR04_RS24600 () | 4653176..4654225 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| DBR04_RS24605 () | 4654227..4654505 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| DBR04_RS24610 () | 4654572..4654823 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| DBR04_RS24615 () | 4655040..4655195 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| DBR04_RS24620 () | 4655267..4655554 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DBR04_RS24625 () | 4655554..4655793 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DBR04_RS24630 () | 4655818..4656123 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| DBR04_RS24635 () | 4656326..4656658 | + | 333 | WP_001301033.1 | protein FlxA | - |
| DBR04_RS24640 () | 4657095..4658408 | - | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| DBR04_RS24645 () | 4658892..4659914 | - | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| DBR04_RS24650 () | 4659917..4660531 | - | 615 | WP_001265627.1 | hypothetical protein | - |
| DBR04_RS24655 () | 4660740..4661405 | - | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| DBR04_RS24660 () | 4661608..4662006 | - | 399 | WP_001151242.1 | DUF977 family protein | - |
| DBR04_RS24665 () | 4662047..4663012 | - | 966 | WP_000054487.1 | hypothetical protein | - |
| DBR04_RS24670 () | 4662993..4663514 | - | 522 | WP_000705355.1 | hypothetical protein | - |
| DBR04_RS24675 () | 4663498..4663725 | - | 228 | WP_000921596.1 | transcriptional regulator | - |
| DBR04_RS24680 () | 4663806..4664213 | + | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| DBR04_RS24685 () | 4664382..4664537 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| DBR04_RS24690 () | 4664539..4665114 | + | 576 | WP_148240173.1 | hypothetical protein | - |
| DBR04_RS24695 () | 4665601..4665789 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| DBR04_RS24700 () | 4665786..4665977 | + | 192 | WP_001083276.1 | lysis protein YdfD | - |
| DBR04_RS24705 () | 4666071..4668542 | + | 2472 | WP_000048363.1 | exonuclease | - |
| DBR04_RS24710 () | 4668615..4668866 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| DBR04_RS24720 () | 4668937..4669614 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| DBR04_RS24725 () | 4669614..4669961 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| DBR04_RS24730 () | 4669981..4671552 | + | 1572 | WP_087565618.1 | IS66 family transposase ISCro1 | Transposase |
| DBR04_RS24735 () | 4671608..4672888 | + | 1281 | WP_021523105.1 | Putative defective protein IntQ ; Integrase | Integrase |
| DBR04_RS24740 () | 4672890..4673018 | - | 129 | WP_001389342.1 | hypothetical protein | - |
| DBR04_RS24745 () | 4673076..4674095 | - | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| DBR04_RS24750 () | 4674107..4675321 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| DBR04_RS24755 () | 4675527..4675853 | - | 327 | WP_001314753.1 | YnfA family protein | - |
| DBR04_RS24760 () | 4675988..4676329 | + | 342 | WP_000705205.1 | DUF1283 family protein | - |
| DBR04_RS24765 () | 4676364..4676924 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| DBR04_RS24770 () | 4676927..4677637 | - | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| DBR04_RS24775 () | 4677745..4678050 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| DBR04_RS24780 () | 4678249..4680675 | + | 2427 | WP_001551145.1 | dimethyl sulfoxide reductase subunit A | - |
| DBR04_RS24785 () | 4680736..4683159 | + | 2424 | WP_072170800.1 | dimethyl sulfoxide reductase subunit A | - |
| DBR04_RS24790 () | 4683170..4683787 | + | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| DBR04_RS24795 () | 4683789..4684643 | + | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit | - |
| DBR04_RS24800 () | 4684686..4685300 | + | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| DBR04_RS24805 () | 4685459..4686751 | + | 1293 | WP_071593650.1 | voltage-gated ClC-type chloride channel ClcB | - |
| DBR04_RS24810 () | 4686704..4687399 | - | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| DBR04_RS24815 () | 4687524..4688744 | - | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|