MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 144968 bp
Accession: NZ_CP022221 Location: 1918087..2063054 Organism: Bradyrhizobium zhanjiangense strain CCBAU 51778 Replicon: chromosome
Accession: NZ_CP022221 Location: 1918087..2063054 Organism: Bradyrhizobium zhanjiangense strain CCBAU 51778 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XH85_RS09190 () | 1914182..1915456 | - | 1275 | WP_128931646.1 | cytochrome P450 | - |
| XH85_RS09200 () | 1915609..1916874 | - | 1266 | WP_128931647.1 | cytochrome P450 | - |
| XH85_RS09205 () | 1917263..1918408 | + | 1146 | WP_206734852.1 | DUF898 family protein | - |
| XH85_RS09210 () | 1918412..1919524 | + | 1113 | WP_128931649.1 | M48 family metallopeptidase | - |
| XH85_RS09215 () | 1919598..1920704 | + | 1107 | WP_128937143.1 | IS5 family transposase ISNha7 | Transposase |
| XH85_RS09220 () | 1920701..1921015 | + | 315 | WP_128931407.1 | hypothetical protein | - |
| XH85_RS09225 () | 1921022..1921651 | - | 630 | WP_091881044.1 | uracil phosphoribosyltransferase | - |
| XH85_RS09235 () | 1921861..1923099 | - | 1239 | WP_128931650.1 | URC4/urg3 family protein | - |
| XH85_RS09240 () | 1923107..1924363 | - | 1257 | WP_128931651.1 | GTP cyclohydrolase II | - |
| XH85_RS09245 () | 1924746..1925873 | + | 1128 | WP_128931652.1 | pyridoxal-phosphate dependent enzyme | - |
| XH85_RS09250 () | 1926025..1926840 | - | 816 | WP_164934986.1 | DUF2927 domain-containing protein | - |
| XH85_RS09255 () | 1927135..1927713 | - | 579 | WP_128941481.1 | L,D-transpeptidase | - |
| XH85_RS09260 () | 1927981..1929528 | + | 1548 | WP_128931655.1 | acetolactate synthase large subunit | - |
| XH85_RS09265 () | 1929567..1930085 | + | 519 | WP_128931656.1 | hypothetical protein | - |
| XH85_RS09270 () | 1930125..1930358 | - | 234 | WP_128931657.1 | DUF3551 domain-containing protein | - |
| XH85_RS09275 () | 1930611..1930946 | + | 336 | WP_128931658.1 | hypothetical protein | - |
| XH85_RS09280 () | 1931080..1931565 | + | 486 | WP_128931659.1 | hypothetical protein | - |
| XH85_RS09285 () | 1931632..1932114 | + | 483 | WP_128931660.1 | transcription elongation factor GreA | - |
| XH85_RS09290 () | 1932141..1932914 | - | 774 | WP_128931661.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| XH85_RS09295 () | 1932960..1933355 | - | 396 | WP_206734853.1 | cupin domain-containing protein | - |
| XH85_RS09300 () | 1933477..1934253 | - | 777 | WP_128931662.1 | carboxymuconolactone decarboxylase family protein | - |
| XH85_RS09305 () | 1934250..1935458 | - | 1209 | WP_128931663.1 | arabinose transporter | - |
| XH85_RS09310 () | 1935658..1936557 | + | 900 | WP_128931664.1 | HTH-type transcriptional regulator PgrR | VF |
| XH85_RS09315 () | 1936942..1939983 | + | 3042 | WP_128937170.1 | GAF domain-containing protein | - |
| XH85_RS09320 () | 1939980..1940369 | + | 390 | WP_128931665.1 | Luminescence regulatory protein LuxO | VF |
| XH85_RS09325 () | 1940494..1941333 | + | 840 | WP_128931666.1 | universal stress protein | - |
| XH85_RS09330 () | 1941919..1943250 | + | 1332 | WP_128931667.1 | Prophage integrase IntA ; Integrase | Integrase |
| XH85_RS09340 () | 1943930..1944859 | - | 930 | WP_128931669.1 | hypothetical protein | - |
| XH85_RS09345 () | 1944963..1946708 | - | 1746 | WP_128931670.1 | ATP-binding protein | - |
| XH85_RS09350 () | 1946705..1947742 | - | 1038 | WP_128931671.1 | SIR2 family protein | - |
| XH85_RS09355 () | 1947963..1948314 | - | 352 | Protein_1815 | hypothetical protein | - |
| XH85_RS09360 () | 1948798..1949721 | - | 924 | WP_128931672.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| XH85_RS09365 () | 1949718..1950332 | - | 615 | WP_128937171.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| XH85_RS09370 () | 1950423..1954481 | + | 4059 | WP_208758143.1 | helix-turn-helix domain-containing protein | - |
| XH85_RS09375 () | 1954759..1955946 | - | 1188 | WP_128931674.1 | restriction endonuclease | - |
| XH85_RS09380 () | 1955970..1957538 | - | 1569 | WP_128931675.1 | hypothetical protein | - |
| XH85_RS09385 () | 1957531..1958952 | - | 1422 | WP_128931676.1 | toll/interleukin-1 receptor domain-containing protein | - |
| XH85_RS44840 () | 1959545..1959700 | - | 156 | WP_164940720.1 | hypothetical protein | - |
| XH85_RS09390 () | 1960920..1961498 | - | 579 | WP_128931677.1 | TIR domain-containing protein | - |
| XH85_RS09395 () | 1961839..1962279 | - | 441 | WP_128931678.1 | hypothetical protein | - |
| XH85_RS09400 () | 1962665..1962967 | - | 303 | WP_128931679.1 | hypothetical protein | - |
| XH85_RS09405 () | 1963197..1963847 | - | 651 | WP_128931680.1 | hypothetical protein | - |
| XH85_RS09410 () | 1964411..1964740 | - | 330 | Protein_1827 | LrgB family protein | - |
| XH85_RS09415 () | 1964749..1965120 | - | 372 | WP_128931681.1 | CidA/LrgA family protein | - |
| XH85_RS09420 () | 1966108..1966764 | + | 657 | Protein_1829 | ABC transporter permease | - |
| XH85_RS09425 () | 1966895..1967323 | - | 429 | Protein_1830 | sigma-54-dependent Fis family transcriptional regulator | - |
| XH85_RS45790 () | 1967607..1967780 | + | 174 | WP_208758098.1 | IS701 family transposase ISMmg4 | Transposase |
| XH85_RS44845 () | 1968403..1968579 | - | 177 | WP_164940722.1 | hypothetical protein | - |
| XH85_RS09440 () | 1969668..1969850 | + | 183 | WP_128931682.1 | hypothetical protein | - |
| XH85_RS44850 () | 1970266..1970430 | + | 165 | WP_164940723.1 | hypothetical protein | - |
| XH85_RS09445 () | 1971320..1972189 | - | 870 | WP_128931683.1 | hypothetical protein | - |
| XH85_RS09450 () | 1972376..1975012 | + | 2637 | WP_128931684.1 | putative signaling protein | VF |
| XH85_RS09455 () | 1975030..1976019 | - | 990 | WP_128931685.1 | DMT family transporter | - |
| XH85_RS09460 () | 1976475..1976672 | - | 198 | WP_128931686.1 | hypothetical protein | - |
| XH85_RS09465 () | 1977459..1979420 | - | 1962 | WP_128931687.1 | putative signaling protein | VF |
| XH85_RS09470 () | 1980301..1981065 | + | 765 | WP_128931688.1 | ferredoxin--NADP reductase | - |
| XH85_RS09475 () | 1981569..1981793 | - | 225 | WP_128931689.1 | hypothetical protein | - |
| XH85_RS09480 () | 1981976..1982456 | - | 481 | Protein_1842 | hypothetical protein | - |
| XH85_RS09485 () | 1983094..1983486 | - | 393 | WP_128931690.1 | hypothetical protein | - |
| XH85_RS09490 () | 1984025..1984699 | + | 675 | WP_128931691.1 | thiaminase II | - |
| XH85_RS09495 () | 1985035..1986006 | + | 972 | WP_128931692.1 | hypothetical protein | - |
| XH85_RS09500 () | 1986122..1986592 | + | 471 | WP_128931693.1 | hypothetical protein | - |
| XH85_RS09505 () | 1986615..1986869 | + | 255 | WP_128931694.1 | hypothetical protein | - |
| XH85_RS09510 () | 1987033..1987215 | - | 183 | WP_128931695.1 | DUF2188 domain-containing protein | - |
| XH85_RS09515 () | 1987240..1987524 | - | 285 | WP_128931696.1 | DUF3892 domain-containing protein | - |
| XH85_RS09520 () | 1987673..1988239 | + | 567 | WP_128931697.1 | hypothetical protein | - |
| XH85_RS09525 () | 1988232..1988636 | + | 405 | WP_128931698.1 | hypothetical protein | - |
| XH85_RS09530 () | 1988662..1989402 | + | 741 | WP_128937172.1 | ImmA/IrrE family metallo-endopeptidase | - |
| XH85_RS09535 () | 1989454..1990023 | + | 570 | WP_128931699.1 | hypothetical protein | - |
| XH85_RS09540 () | 1990037..1990627 | - | 591 | WP_128931700.1 | mobile mystery protein B | - |
| XH85_RS09545 () | 1990624..1991076 | - | 453 | WP_128931701.1 | mobile mystery protein A | - |
| XH85_RS09550 () | 1991291..1992880 | + | 1590 | WP_128931702.1 | ATP-binding protein | - |
| XH85_RS09555 () | 1992774..1993886 | + | 1113 | WP_128931703.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| XH85_RS09560 () | 1993883..1994806 | + | 924 | Protein_1858 | Tyrosine recombinase XerD ; Integrase | Integrase |
| XH85_RS09565 () | 1994803..1995790 | + | 988 | Protein_1859 | Tyrosine recombinase XerC | VF |
| XH85_RS09570 () | 1995890..1996339 | - | 450 | WP_128931704.1 | hypothetical protein | - |
| XH85_RS09575 () | 1996386..1996754 | - | 369 | WP_128931705.1 | hypothetical protein | - |
| XH85_RS09580 () | 1996913..1997158 | + | 246 | Protein_1862 | Ku protein | - |
| XH85_RS09585 () | 1997468..1997668 | + | 201 | WP_128931706.1 | hypothetical protein | - |
| XH85_RS09590 () | 1997683..1998099 | + | 417 | WP_128937173.1 | hypothetical protein | - |
| XH85_RS09595 () | 1998431..1999255 | + | 825 | WP_128931707.1 | ribonuclease HII | - |
| XH85_RS09600 () | 1999283..2000230 | - | 948 | WP_128931708.1 | non-homologous end-joining DNA ligase | - |
| XH85_RS09605 () | 2000373..2000990 | + | 618 | WP_128931709.1 | cell envelope biogenesis protein TolA | - |
| XH85_RS44860 () | 2001049..2001216 | - | 168 | WP_164936065.1 | hypothetical protein | - |
| XH85_RS09610 () | 2001216..2002136 | - | 921 | WP_128937174.1 | non-homologous end-joining DNA ligase | - |
| XH85_RS09615 () | 2002242..2002430 | + | 189 | WP_128931710.1 | DUF3606 domain-containing protein | - |
| XH85_RS09620 () | 2002456..2002734 | - | 279 | WP_128931711.1 | hypothetical protein | - |
| XH85_RS09625 () | 2004056..2004802 | + | 747 | WP_128931712.1 | DUF1738 domain-containing protein | - |
| XH85_RS09630 () | 2005059..2006483 | + | 1425 | WP_208758099.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| XH85_RS09635 () | 2006480..2008321 | + | 1842 | Protein_1874 | hypothetical protein | - |
| XH85_RS09640 () | 2008321..2010487 | + | 2167 | Protein_1875 | hypothetical protein | - |
| XH85_RS09645 () | 2010484..2010927 | + | 444 | WP_128931713.1 | hypothetical protein | - |
| XH85_RS09650 () | 2011148..2012080 | + | 933 | WP_128931714.1 | DUF1738 domain-containing protein | - |
| XH85_RS09655 () | 2012137..2012544 | - | 408 | WP_128937176.1 | response regulator | - |
| XH85_RS09660 () | 2012846..2015230 | - | 2385 | WP_128937177.1 | AI-2E family transporter | - |
| XH85_RS09665 () | 2015561..2016003 | - | 443 | Protein_1880 | IS256 family transposase ISMtsp13 | Transposase |
| XH85_RS09670 () | 2016245..2016493 | + | 249 | WP_128931715.1 | hypothetical protein | - |
| XH85_RS09675 () | 2016958..2017161 | + | 204 | WP_128931716.1 | CsbD family protein | - |
| XH85_RS09680 () | 2017392..2018318 | - | 927 | WP_128931717.1 | hypothetical protein | - |
| XH85_RS09685 () | 2018472..2018969 | - | 498 | WP_128937178.1 | ferritin-like domain-containing protein | - |
| XH85_RS09690 () | 2019427..2020893 | - | 1467 | WP_128937179.1 | PAS domain S-box protein | - |
| XH85_RS09695 () | 2021350..2021889 | - | 540 | WP_164940724.1 | cupin domain-containing protein | - |
| XH85_RS09700 () | 2022104..2022682 | - | 579 | WP_128931719.1 | cupin domain-containing protein | - |
| XH85_RS09705 () | 2022679..2023293 | - | 615 | WP_128931720.1 | sigma-70 family RNA polymerase sigma factor | - |
| XH85_RS09710 () | 2023756..2024501 | + | 746 | Protein_1889 | site-specific integrase | - |
| XH85_RS09715 () | 2024463..2024858 | - | 396 | WP_128931721.1 | Response regulator receiver protein CpdR | VF |
| XH85_RS09720 () | 2025145..2025354 | + | 210 | WP_128931722.1 | hypothetical protein | - |
| XH85_RS09725 () | 2025374..2025982 | + | 609 | WP_128931723.1 | carbonic anhydrase | - |
| XH85_RS09730 () | 2026287..2026379 | + | 93 | Protein_1893 | antirestriction protein ArdC | - |
| XH85_RS09735 () | 2026547..2027776 | + | 1230 | WP_128931724.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| XH85_RS09740 () | 2027773..2029149 | + | 1377 | WP_128931725.1 | Tyrosine recombinase XerD | VF |
| XH85_RS09745 () | 2029146..2030153 | + | 1008 | WP_128931726.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| XH85_RS09755 () | 2030476..2031112 | + | 637 | Protein_1897 | ParB/RepB/Spo0J family partition protein | - |
| XH85_RS45795 () | 2031230..2031706 | + | 477 | WP_208758100.1 | hypothetical protein | - |
| XH85_RS09775 () | 2031844..2032407 | + | 564 | Protein_1899 | plasmid stabilization protein | - |
| XH85_RS09780 () | 2032589..2036905 | + | 4317 | WP_128931727.1 | strawberry notch family protein | - |
| XH85_RS09785 () | 2036905..2037966 | + | 1062 | WP_128931728.1 | toprim domain-containing protein | - |
| XH85_RS09790 () | 2038290..2039213 | + | 924 | WP_128931729.1 | DUF2493 domain-containing protein | - |
| XH85_RS09795 () | 2039353..2039802 | + | 450 | WP_128931730.1 | hypothetical protein | - |
| XH85_RS09805 () | 2040385..2040705 | + | 321 | WP_018454792.1 | DUF736 domain-containing protein | - |
| XH85_RS09810 () | 2040839..2041280 | + | 442 | Protein_1905 | DUF2285 domain-containing protein | - |
| XH85_RS09815 () | 2041413..2041694 | + | 282 | WP_128931731.1 | helix-turn-helix domain-containing protein | - |
| XH85_RS09820 () | 2041717..2042598 | + | 882 | WP_128931732.1 | replication initiator protein A | - |
| XH85_RS09825 () | 2043186..2044235 | - | 1050 | WP_128931733.1 | IS110 family transposase ISRhru3 | Transposase |
| XH85_RS09830 () | 2044514..2044978 | + | 465 | WP_128931734.1 | DUF2840 domain-containing protein | - |
| XH85_RS09835 () | 2044975..2045487 | + | 513 | WP_128931735.1 | S26 family signal peptidase | - |
| XH85_RS09840 () | 2045490..2046317 | + | 828 | WP_128937180.1 | lytic transglycosylase domain-containing protein | - |
| XH85_RS09845 () | 2046543..2047591 | + | 1049 | Protein_1912 | IS110 family transposase | - |
| XH85_RS09850 () | 2048054..2048278 | - | 225 | WP_128937181.1 | hypothetical protein | - |
| XH85_RS09855 () | 2048394..2049935 | - | 1542 | WP_128931736.1 | IS66 family transposase ISAli15 | Transposase |
| XH85_RS09860 () | 2050005..2050358 | - | 354 | WP_128931737.1 | IS66 family transposase ISAzs21 | Transposase |
| XH85_RS09865 () | 2050355..2051242 | - | 888 | Protein_1916 | IS3 family transposase IS426 | Transposase |
| XH85_RS09870 () | 2051514..2053277 | + | 1764 | WP_128931738.1 | VirD2 family relaxase/mobilization nuclease | - |
| XH85_RS09875 () | 2053314..2055302 | + | 1989 | WP_128931739.1 | Conjugal transfer protein TraG | VF |
| XH85_RS09880 () | 2055309..2055734 | + | 426 | WP_128931740.1 | ribbon-helix-helix domain-containing protein | - |
| XH85_RS09885 () | 2055870..2057204 | + | 1335 | WP_128931741.1 | putative sulfoacetate transporter SauU | VF |
| XH85_RS09890 () | 2057428..2058342 | + | 915 | WP_206732794.1 | Type IV secretion system protein VirB11 | VF |
| XH85_RS09895 () | 2058344..2058667 | + | 324 | WP_128931743.1 | TrbC/VirB2 family protein | - |
| XH85_RS09900 () | 2058667..2058930 | + | 264 | WP_128931744.1 | VirB3 family type IV secretion system protein | - |
| XH85_RS09905 () | 2058942..2061383 | + | 2442 | WP_128937182.1 | conjugal transfer protein TrbE | - |
| XH85_RS09910 () | 2061380..2062108 | + | 729 | WP_128931745.1 | P-type conjugative transfer protein TrbJ | - |
| XH85_RS09915 () | 2062108..2062479 | + | 372 | WP_128931746.1 | putative entry exclusion protein TrbK-alt | - |
| XH85_RS09920 () | 2062476..2063702 | + | 1227 | WP_128931747.1 | P-type conjugative transfer protein TrbL | - |
| XH85_RS09925 () | 2063796..2064479 | + | 684 | WP_128931748.1 | conjugal transfer protein TrbF | - |
| XH85_RS09930 () | 2064485..2065510 | + | 1026 | WP_164934978.1 | P-type conjugative transfer protein TrbG | - |
| XH85_RS09935 () | 2065507..2066718 | + | 1212 | WP_128931750.1 | TrbI/VirB10 family protein | - |
| XH85_RS09940 () | 2066723..2066965 | + | 243 | WP_128931751.1 | DUF2274 domain-containing protein | - |
| XH85_RS09945 () | 2067130..2068038 | - | 909 | WP_128937183.1 | TauD/TfdA family dioxygenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|