MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 82309 bp
Accession: NZ_CP022015 Location: 4875909..4958217 Organism: Salmonella enterica subsp. enterica serovar India str. SA20085604 Replicon: chromosome
Accession: NZ_CP022015 Location: 4875909..4958217 Organism: Salmonella enterica subsp. enterica serovar India str. SA20085604 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFZ16_RS24420 (4870926) | 4870926..4871147 | + | 222 | WP_080178749.1 | AlpA family phage regulatory protein | - |
| LFZ16_RS24425 (4871344) | 4871344..4871916 | + | 573 | WP_223352738.1 | hypothetical protein | - |
| LFZ16_RS24430 (4871909) | 4871909..4872184 | + | 276 | WP_223352739.1 | hypothetical protein | - |
| LFZ16_RS24435 (4872177) | 4872177..4872362 | + | 186 | WP_024160158.1 | host cell division inhibitor Icd-like protein | - |
| LFZ16_RS24440 (4872520) | 4872520..4872711 | + | 192 | WP_223352740.1 | hypothetical protein | - |
| LFZ16_RS24445 (4872778) | 4872778..4873071 | + | 294 | WP_223352741.1 | hypothetical protein | - |
| LFZ16_RS24450 (4873102) | 4873102..4873287 | + | 186 | WP_223352742.1 | hypothetical protein | - |
| LFZ16_RS24455 (4873394) | 4873394..4873624 | + | 231 | WP_223352743.1 | hypothetical protein | - |
| LFZ16_RS24460 (4873857) | 4873857..4875647 | + | 1791 | WP_223352744.1 | primase-like DNA-binding domain-containing protein | - |
| LFZ16_RS24465 (4876046) | 4876046..4877035 | + | 990 | WP_223352745.1 | hypothetical protein ; Integrase | Integrase |
| LFZ16_RS24470 (4877124) | 4877124..4877465 | + | 342 | WP_223352746.1 | addiction module killer protein | - |
| LFZ16_RS24475 (4877455) | 4877455..4877808 | + | 354 | WP_223352747.1 | DNA-binding protein | - |
| LFZ16_RS24480 (4878472) | 4878472..4878627 | + | 156 | Protein_4787 | ogr/Delta-like zinc finger family protein | - |
| LFZ16_RS24485 (4878706) | 4878706..4878936 | - | 231 | WP_223352748.1 | hypothetical protein | - |
| LFZ16_RS24490 (4879109) | 4879109..4879837 | + | 729 | WP_223352749.1 | hypothetical protein | - |
| LFZ16_RS24495 (4879838) | 4879838..4881019 | + | 1182 | WP_223352750.1 | P2 family phage major capsid protein | - |
| LFZ16_RS24500 (4881075) | 4881075..4881419 | - | 345 | WP_223352751.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LFZ16_RS24505 (4881419) | 4881419..4881667 | - | 249 | WP_223352752.1 | transcriptional regulator | - |
| LFZ16_RS24510 (4882160) | 4882160..4883428 | + | 1269 | WP_023212809.1 | hypothetical protein ; Integrase | Integrase |
| LFZ16_RS24515 (4883828) | 4883828..4885477 | + | 1650 | WP_023212808.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| LFZ16_RS24520 (4885482) | 4885482..4886807 | + | 1326 | WP_023212807.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| LFZ16_RS24525 (4886788) | 4886788..4891869 | + | 5082 | WP_223352753.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| LFZ16_RS24530 (4891866) | 4891866..4892687 | + | 822 | WP_023212805.1 | restriction endonuclease | - |
| LFZ16_RS24535 (4892730) | 4892730..4893923 | - | 1194 | WP_023212804.1 | hypothetical protein | - |
| LFZ16_RS24540 (4894005) | 4894005..4894358 | - | 354 | WP_023212803.1 | DNA sulfur modification protein DndE | - |
| LFZ16_RS24545 (4894358) | 4894358..4896367 | - | 2010 | WP_024147028.1 | DNA sulfur modification protein DndD | - |
| LFZ16_RS24550 (4896357) | 4896357..4897991 | - | 1635 | WP_023212801.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| LFZ16_RS24555 (4897988) | 4897988..4899073 | - | 1086 | WP_023212800.1 | DNA sulfur modification protein DndB | - |
| LFZ16_RS24560 (4900396) | 4900396..4900917 | - | 522 | WP_023212798.1 | hypothetical protein | - |
| LFZ16_RS24565 (4901078) | 4901078..4901653 | - | 576 | WP_023212797.1 | hypothetical protein | - |
| LFZ16_RS24570 (4901740) | 4901740..4901946 | - | 207 | WP_001620335.1 | AlpA family phage regulatory protein | - |
| LFZ16_RS24575 (4902052) | 4902052..4902687 | - | 636 | WP_023212796.1 | inovirus Gp2 family protein | - |
| LFZ16_RS24580 (4903189) | 4903189..4903392 | + | 204 | WP_023212795.1 | hypothetical protein | - |
| LFZ16_RS24585 (4903392) | 4903392..4904147 | + | 756 | WP_023212794.1 | hypothetical protein | - |
| LFZ16_RS24590 (4904299) | 4904299..4904544 | + | 246 | WP_001719480.1 | hypothetical protein | - |
| LFZ16_RS24595 (4904899) | 4904899..4905612 | + | 714 | WP_001620327.1 | WYL domain-containing protein | - |
| LFZ16_RS24600 (4905685) | 4905685..4905831 | + | 147 | WP_023892166.1 | hypothetical protein | - |
| LFZ16_RS24605 (4905848) | 4905848..4906051 | + | 204 | WP_000508162.1 | hypothetical protein | - |
| LFZ16_RS24610 (4906116) | 4906116..4907036 | + | 921 | WP_223353740.1 | inhibitor of vertebrate lysozyme family protein | - |
| LFZ16_RS24615 (4907121) | 4907121..4907761 | + | 641 | Protein_4814 | DUF945 domain-containing protein | - |
| LFZ16_RS24620 (4907774) | 4907774..4908274 | + | 501 | WP_023212790.1 | DNA repair protein RadC | - |
| LFZ16_RS24625 (4908337) | 4908337..4908666 | + | 330 | WP_023212789.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| LFZ16_RS24630 (4908681) | 4908681..4908998 | + | 318 | Protein_4817 | toxin | - |
| LFZ16_RS24635 (4909140) | 4909140..4909973 | + | 834 | WP_023212788.1 | DUF4942 domain-containing protein | - |
| LFZ16_RS24640 (4910050) | 4910050..4910298 | + | 249 | WP_023212787.1 | ribbon-helix-helix domain-containing protein | - |
| LFZ16_RS24645 (4910407) | 4910407..4910646 | + | 240 | WP_001118105.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| LFZ16_RS24650 (4910649) | 4910649..4910957 | + | 309 | WP_023212786.1 | CcdB family protein | Toxin Detail |
| LFZ16_RS24655 (4910991) | 4910991..4911509 | - | 519 | Protein_4822 | TIGR03746 family integrating conjugative element protein | - |
| LFZ16_RS29660 (4911506) | 4911506..4911670 | - | 165 | WP_238705881.1 | DUF3487 family protein | - |
| LFZ16_RS24660 (4911621) | 4911621..4911860 | - | 240 | WP_023212784.1 | DUF3487 family protein | - |
| LFZ16_RS24665 (4911862) | 4911862..4912179 | - | 318 | WP_023212783.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| LFZ16_RS24670 (4912189) | 4912189..4912422 | - | 234 | WP_023212782.1 | TIGR03758 family integrating conjugative element protein | - |
| LFZ16_RS24675 (4912415) | 4912415..4912723 | - | 309 | WP_023212781.1 | RAQPRD family integrative conjugative element protein | - |
| LFZ16_RS24680 (4913019) | 4913019..4915466 | - | 2448 | WP_052942568.1 | IS21 family transposase ISCsa9 | Transposase |
| LFZ16_RS24685 (4915818) | 4915818..4916450 | - | 633 | WP_023212779.1 | DUF4400 domain-containing protein | - |
| LFZ16_RS24690 (4916447) | 4916447..4918453 | - | 2007 | Protein_4830 | type IV conjugative transfer system coupling protein TraD | - |
| LFZ16_RS24695 (4918450) | 4918450..4918968 | - | 519 | WP_023212775.1 | hypothetical protein | VF |
| LFZ16_RS24700 (4918947) | 4918947..4919621 | - | 675 | WP_023212774.1 | TIGR03759 family integrating conjugative element protein | - |
| LFZ16_RS24705 (4919625) | 4919625..4920284 | - | 660 | WP_023212773.1 | hypothetical protein | VF |
| LFZ16_RS24710 (4920675) | 4920675..4922864 | + | 2190 | WP_223352754.1 | hypothetical protein | - |
| LFZ16_RS24715 (4923104) | 4923104..4923820 | - | 717 | WP_000532939.1 | hypothetical protein | VF |
| LFZ16_RS24720 (4924380) | 4924380..4926011 | - | 1632 | WP_223352755.1 | class I SAM-dependent methyltransferase | - |
| LFZ16_RS24725 (4926016) | 4926016..4926273 | - | 258 | WP_001054380.1 | YjhX family toxin | - |
| LFZ16_RS24730 (4926761) | 4926761..4927369 | + | 609 | WP_000864858.1 | DUF1062 domain-containing protein | - |
| LFZ16_RS24735 (4927721) | 4927721..4928632 | + | 912 | WP_001647363.1 | hypothetical protein | - |
| LFZ16_RS24740 (4928837) | 4928837..4929298 | + | 462 | WP_001642121.1 | DUF302 domain-containing protein | - |
| LFZ16_RS24745 (4929295) | 4929295..4929969 | - | 675 | WP_000588690.1 | dienelactone hydrolase family protein | - |
| LFZ16_RS24750 (4930319) | 4930319..4931092 | + | 774 | WP_000841654.1 | Uxu operon transcriptional regulator | - |
| LFZ16_RS24755 (4931093) | 4931093..4932106 | - | 1014 | WP_023212771.1 | tryptophan--tRNA ligase | - |
| LFZ16_RS24760 (4932824) | 4932824..4933354 | + | 531 | WP_000907671.1 | Hcp family type VI secretion system effector | - |
| LFZ16_RS24765 (4933593) | 4933593..4934327 | + | 735 | WP_000683243.1 | aspartate/glutamate racemase family protein | - |
| LFZ16_RS24770 (4934333) | 4934333..4935241 | - | 909 | WP_000383509.1 | hypochlorite stress DNA-binding transcriptional regulator HypT | - |
| LFZ16_RS24775 (4935360) | 4935360..4936532 | - | 1173 | WP_023137550.1 | beta-aspartyl-peptidase | - |
| LFZ16_RS24780 (4936545) | 4936545..4937006 | - | 462 | WP_000211979.1 | YjiG family protein | - |
| LFZ16_RS24785 (4937003) | 4937003..4937674 | - | 672 | WP_000068750.1 | nucleoside recognition domain-containing protein | - |
| LFZ16_RS24790 (4938545) | 4938545..4939729 | - | 1185 | WP_023212770.1 | MFS transporter | - |
| LFZ16_RS24795 (4939938) | 4939938..4941209 | - | 1272 | WP_023212769.1 | DUF445 domain-containing protein | - |
| LFZ16_RS24800 (4941296) | 4941296..4942537 | - | 1242 | WP_001188918.1 | multidrug efflux MFS transporter MdtM | - |
| LFZ16_RS24805 (4943016) | 4943016..4943969 | + | 954 | WP_000749996.1 | hypothetical protein | VF |
| LFZ16_RS24810 (4943966) | 4943966..4944109 | - | 144 | WP_153247006.1 | hypothetical protein | - |
| LFZ16_RS24815 (4944150) | 4944150..4945520 | + | 1371 | WP_023212768.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| LFZ16_RS24820 (4945616) | 4945616..4945759 | - | 144 | WP_001647387.1 | hypothetical protein | - |
| LFZ16_RS24825 (4945726) | 4945726..4945890 | + | 165 | WP_000397917.1 | DUF1127 domain-containing protein | - |
| LFZ16_RS24830 (4945965) | 4945965..4946666 | - | 702 | WP_023197696.1 | hypothetical protein | - |
| LFZ16_RS24835 (4946740) | 4946740..4947072 | - | 333 | WP_001647389.1 | endoribonuclease SymE | - |
| LFZ16_RS24840 (4947367) | 4947367..4948008 | - | 642 | WP_000438685.1 | LysE family translocator | - |
| LFZ16_RS24845 (4948056) | 4948056..4948871 | - | 816 | WP_001128427.1 | hypothetical protein | VF |
| LFZ16_RS24850 (4948908) | 4948908..4949864 | - | 957 | WP_000187838.1 | GTPase | - |
| LFZ16_RS24855 (4949875) | 4949875..4950078 | - | 204 | WP_000460616.1 | YbdD/YjiX family protein | - |
| LFZ16_RS24860 (4950173) | 4950173..4952323 | - | 2151 | WP_000379928.1 | pyruvate/proton symporter BtsT | - |
| LFZ16_RS24865 (4952690) | 4952690..4954351 | + | 1662 | WP_000919521.1 | hypothetical protein | VF |
| LFZ16_RS24870 (4954463) | 4954463..4954537 | - | 75 | Protein_4866 | GNAT family N-acetyltransferase | - |
| LFZ16_RS24875 (4954674) | 4954674..4957439 | + | 2766 | WP_023212767.1 | hypothetical protein | VF |
| LFZ16_RS24880 (4957541) | 4957541..4957963 | + | 423 | WP_000820693.1 | PTS sugar transporter subunit IIA | - |
| LFZ16_RS24885 (4957978) | 4957978..4958439 | + | 462 | WP_000634729.1 | PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB | - |
| LFZ16_RS24890 (4958465) | 4958465..4959244 | + | 780 | WP_000228866.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| LFZ16_RS24895 (4959222) | 4959222..4960070 | + | 849 | WP_000178065.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| LFZ16_RS24900 (4960083) | 4960083..4961144 | + | 1062 | WP_000075417.1 | SIS domain-containing protein | - |
| LFZ16_RS24905 (4961162) | 4961162..4962172 | + | 1011 | WP_000900307.1 | SIS domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|