MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 38015 bp
Accession: NZ_CP022015 Location: 1533894..1571908 Organism: Salmonella enterica subsp. enterica serovar India str. SA20085604 Replicon: chromosome
Accession: NZ_CP022015 Location: 1533894..1571908 Organism: Salmonella enterica subsp. enterica serovar India str. SA20085604 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFZ16_RS07755 (1530249) | 1530249..1532693 | + | 2445 | WP_000850250.1 | dimethylsulfoxide reductase subunit A | - |
| LFZ16_RS07760 (1532704) | 1532704..1533321 | + | 618 | WP_000213069.1 | dimethylsulfoxide reductase subunit B | - |
| LFZ16_RS07765 (1533323) | 1533323..1534186 | + | 864 | WP_000534681.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| LFZ16_RS07770 (1534536) | 1534536..1535684 | + | 1149 | WP_000109271.1 | MFS transporter | - |
| LFZ16_RS07775 (1535902) | 1535902..1537323 | + | 1422 | WP_001134263.1 | amino acid permease | - |
| LFZ16_RS07780 (1537615) | 1537615..1538412 | - | 798 | WP_000067928.1 | pyruvate formate lyase 1-activating protein | - |
| LFZ16_RS07785 (1538531) | 1538531..1538857 | - | 327 | Protein_1527 | cytoplasmic protein | - |
| LFZ16_RS07790 (1538988) | 1538988..1539947 | + | 960 | WP_001145572.1 | hypothetical protein | VF |
| LFZ16_RS07795 (1540019) | 1540019..1542301 | - | 2283 | WP_001292803.1 | formate C-acetyltransferase | - |
| LFZ16_RS07800 (1542361) | 1542361..1543218 | - | 858 | WP_000642539.1 | formate transporter FocA | - |
| LFZ16_RS07805 (1543623) | 1543623..1545383 | - | 1761 | WP_001530487.1 | 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO | - |
| LFZ16_RS07810 (1545651) | 1545651..1546883 | + | 1233 | WP_223353248.1 | hypothetical protein ; Integrase | Integrase |
| LFZ16_RS07815 (1546980) | 1546980..1547735 | + | 756 | WP_223353249.1 | hypothetical protein | - |
| LFZ16_RS07820 (1547850) | 1547850..1548161 | + | 312 | WP_223353250.1 | AlpA family phage regulatory protein | - |
| LFZ16_RS07825 (1548268) | 1548268..1548447 | - | 180 | WP_057394167.1 | hypothetical protein | - |
| LFZ16_RS07830 (1548584) | 1548584..1548811 | + | 228 | WP_223353251.1 | hypothetical protein | - |
| LFZ16_RS07835 (1548804) | 1548804..1548968 | + | 165 | WP_223353252.1 | host cell division inhibitor Icd-like protein | - |
| LFZ16_RS07840 (1548961) | 1548961..1549173 | + | 213 | WP_223353253.1 | hypothetical protein | - |
| LFZ16_RS07845 (1549163) | 1549163..1549453 | + | 291 | WP_223353254.1 | hypothetical protein | - |
| LFZ16_RS07850 (1549473) | 1549473..1549781 | + | 309 | WP_223353255.1 | DUF4222 domain-containing protein | - |
| LFZ16_RS07855 (1549778) | 1549778..1551928 | + | 2151 | WP_223353256.1 | DUF927 domain-containing protein | - |
| LFZ16_RS07860 (1552045) | 1552045..1552425 | + | 381 | WP_223353257.1 | hypothetical protein | - |
| LFZ16_RS07865 (1552406) | 1552406..1553389 | + | 984 | WP_223353258.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LFZ16_RS07870 (1553829) | 1553829..1554284 | + | 456 | WP_223353697.1 | single-stranded DNA-binding protein | - |
| LFZ16_RS07875 (1554338) | 1554338..1554937 | + | 600 | WP_223353259.1 | ProQ/FinO family protein | - |
| LFZ16_RS07880 (1554927) | 1554927..1555139 | + | 213 | WP_023246566.1 | hypothetical protein | - |
| LFZ16_RS07885 (1555479) | 1555479..1555775 | + | 297 | WP_079919438.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LFZ16_RS07890 (1555777) | 1555777..1556052 | + | 276 | WP_223353260.1 | putative addiction module antidote protein | Antitoxin Detail |
| LFZ16_RS07895 (1556089) | 1556089..1556427 | + | 339 | WP_223353261.1 | transcriptional regulator | - |
| LFZ16_RS07900 (1556788) | 1556788..1556961 | + | 174 | WP_223353262.1 | hypothetical protein | - |
| LFZ16_RS07905 (1556958) | 1556958..1557311 | + | 354 | WP_223353263.1 | hypothetical protein | - |
| LFZ16_RS07910 (1557413) | 1557413..1558126 | + | 714 | WP_223353264.1 | hypothetical protein | - |
| LFZ16_RS07915 (1558139) | 1558139..1558666 | + | 528 | WP_223353265.1 | hypothetical protein | - |
| LFZ16_RS07920 (1559180) | 1559180..1559770 | + | 591 | WP_223353266.1 | hypothetical protein | - |
| LFZ16_RS07925 (1560112) | 1560112..1560315 | - | 204 | WP_223353267.1 | hypothetical protein | - |
| LFZ16_RS07930 (1560331) | 1560331..1560720 | - | 390 | WP_223353268.1 | hypothetical protein | - |
| LFZ16_RS07935 (1561375) | 1561375..1561527 | + | 153 | WP_070788870.1 | Hok/Gef family protein | - |
| LFZ16_RS07940 (1561853) | 1561853..1562545 | + | 693 | WP_000642868.1 | DUF421 domain-containing protein | - |
| LFZ16_RS07945 (1562731) | 1562731..1563819 | + | 1089 | WP_000079585.1 | 3-phosphoserine/phosphohydroxythreonine transaminase | - |
| LFZ16_RS07950 (1563890) | 1563890..1565173 | + | 1284 | WP_000445192.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| LFZ16_RS07955 (1565317) | 1565317..1566078 | + | 762 | WP_023212494.1 | M48 family metallopeptidase | - |
| LFZ16_RS07960 (1566251) | 1566251..1566934 | + | 684 | WP_000125007.1 | (d)CMP kinase | - |
| LFZ16_RS07965 (1567048) | 1567048..1568721 | + | 1674 | WP_000140324.1 | 30S ribosomal protein S1 | - |
| LFZ16_RS07970 (1568877) | 1568877..1569161 | + | 285 | WP_000167332.1 | integration host factor subunit beta | - |
| LFZ16_RS07975 (1569391) | 1569391..1571655 | + | 2265 | WP_023212495.1 | ComEC family protein | - |
| LFZ16_RS07980 (1571692) | 1571692..1573440 | + | 1749 | WP_000551246.1 | lipid A ABC transporter ATP-binding protein/permease MsbA | - |
| LFZ16_RS07985 (1573437) | 1573437..1574414 | + | 978 | WP_000561679.1 | tetraacyldisaccharide 4'-kinase | - |
| LFZ16_RS07990 (1574458) | 1574458..1575690 | + | 1233 | WP_023212156.1 | winged helix-turn-helix domain-containing protein | - |
| LFZ16_RS07995 (1575742) | 1575742..1575924 | + | 183 | WP_000350055.1 | protein YcaR | - |
| LFZ16_RS08000 (1575921) | 1575921..1576667 | + | 747 | WP_000011578.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|