MGE detailed information
MGE type: Conjugative plasmid MGE length: 125099 bp
Accession: NZ_CP021845 Location: 1..125099 Organism: Escherichia coli strain EC1515 Replicon: plasmid pEC1515-1
Accession: NZ_CP021845 Location: 1..125099 Organism: Escherichia coli strain EC1515 Replicon: plasmid pEC1515-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH89_RS26065 () | 557..1711 | + | 1155 | WP_001139955.1 | integrase | - |
| CDH89_RS26070 () | 1862..2686 | + | 825 | WP_023518851.1 | hypothetical protein | - |
| CDH89_RS26075 () | 2772..3974 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| CDH89_RS26080 () | 4034..4618 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| CDH89_RS26085 () | 5013..5471 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| CDH89_RS26090 () | 5468..6286 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| CDH89_RS26095 () | 6283..7431 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| CDH89_RS26100 () | 7428..7718 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| CDH89_RS26105 () | 7733..8284 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| CDH89_RS26110 () | 8374..12141 | + | 3768 | WP_023518849.1 | SogL | - |
| CDH89_RS26115 () | 12159..12506 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| CDH89_RS26120 () | 12503..13195 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| CDH89_RS26125 () | 13206..14189 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| CDH89_RS26130 () | 14192..15481 | + | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| CDH89_RS26135 () | 15481..16185 | + | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| CDH89_RS26140 () | 16185..16712 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| CDH89_RS26145 () | 16763..17167 | + | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| CDH89_RS26150 () | 17231..17419 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| CDH89_RS26155 () | 17403..18203 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| CDH89_RS26160 () | 18293..21337 | + | 3045 | WP_023518848.1 | IncI1-type conjugal transfer protein TraU | - |
| CDH89_RS26165 () | 21337..21951 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| CDH89_RS26170 () | 21918..23120 | + | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| CDH89_RS26175 () | 23149..23733 | + | 585 | WP_001746157.1 | IncI1-type conjugal transfer protein TraX | - |
| CDH89_RS26180 () | 23830..25998 | + | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
| CDH89_RS26185 () | 26069..26731 | + | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CDH89_RS26190 () | 26803..27012 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| CDH89_RS28600 () | 27404..27580 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| CDH89_RS26195 () | 27645..27941 | - | 297 | WP_011264046.1 | hypothetical protein | - |
| CDH89_RS26200 () | 28241..28492 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| CDH89_RS26205 () | 28564..28716 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - () | 28768..28828 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28768..28828 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28768..28828 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28768..28828 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| CDH89_RS28385 () | 29031..29378 | + | 348 | Protein_31 | protein finQ | - |
| CDH89_RS26215 () | 29564..30826 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| CDH89_RS26220 () | 31150..32295 | + | 1146 | WP_015056382.1 | Beta-lactamase | ARG |
| CDH89_RS26225 () | 32389..32922 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
| CDH89_RS26230 () | 32919..33236 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| CDH89_RS26235 () | 33465..34214 | + | 750 | Protein_36 | protein finQ | - |
| - () | 34284..34341 | + | 58 | NuclAT_1 | - | - |
| - () | 34284..34341 | + | 58 | NuclAT_1 | - | - |
| - () | 34284..34341 | + | 58 | NuclAT_1 | - | - |
| - () | 34284..34341 | + | 58 | NuclAT_1 | - | - |
| CDH89_RS26240 () | 34521..35729 | + | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| CDH89_RS26245 () | 35748..36818 | + | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| CDH89_RS26250 () | 36811..38817 | + | 2007 | Protein_39 | conjugal transfer protein TrbC | - |
| CDH89_RS26255 () | 38902..39327 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| CDH89_RS26260 () | 39324..39674 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| CDH89_RS26265 () | 39705..41318 | + | 1614 | WP_000080193.1 | IS66 family transposase ISEc23 | Transposase |
| CDH89_RS26270 () | 41352..41642 | + | 291 | WP_088172500.1 | conjugal transfer protein TrbC | - |
| CDH89_RS26275 () | 41680..44379 | - | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| CDH89_RS26280 () | 44390..44722 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| CDH89_RS26285 () | 44956..45291 | + | 336 | WP_021529212.1 | hypothetical protein | - |
| CDH89_RS26290 () | 45378..46226 | - | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| CDH89_RS28605 () | 46575..46772 | + | 198 | WP_001161107.1 | hypothetical protein | - |
| CDH89_RS26305 () | 46806..47057 | + | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| CDH89_RS26310 () | 47088..47294 | - | 207 | WP_000150314.1 | hypothetical protein | VF |
| CDH89_RS26315 () | 47356..48258 | - | 903 | WP_011264057.1 | Recombination-promoting nuclease RpnA | VF |
| CDH89_RS26320 () | 48255..48644 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| CDH89_RS26325 () | 48821..49087 | - | 267 | WP_000804663.1 | hypothetical protein | - |
| CDH89_RS26330 () | 49181..49615 | - | 435 | WP_000218858.1 | hypothetical protein | - |
| CDH89_RS26345 () | 50344..50844 | - | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| CDH89_RS26355 () | 51444..51902 | - | 459 | WP_001579745.1 | hypothetical protein | - |
| CDH89_RS26360 () | 51899..52618 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| CDH89_RS26365 () | 52615..53049 | - | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| CDH89_RS26370 () | 53104..55062 | - | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| CDH89_RS26375 () | 55121..55354 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| CDH89_RS26380 () | 55412..55939 | - | 528 | WP_001276107.1 | single-stranded DNA-binding protein | - |
| CDH89_RS26390 () | 56323..56637 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| CDH89_RS26400 () | 56708..56899 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| CDH89_RS26405 () | 56896..57318 | - | 423 | WP_000271744.1 | DUF1380 family protein | - |
| CDH89_RS26410 () | 57365..57667 | - | 303 | WP_077249901.1 | antirestriction protein | - |
| CDH89_RS28610 () | 58202..58978 | - | 777 | WP_001005023.1 | hypothetical protein | - |
| CDH89_RS26425 () | 59024..59458 | - | 435 | WP_000274500.1 | DUF1380 family protein | - |
| CDH89_RS26430 () | 59472..59693 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| CDH89_RS26435 () | 59694..60377 | - | 684 | WP_000086147.1 | DNA methylase | - |
| CDH89_RS26440 () | 60454..60765 | - | 312 | WP_032072582.1 | hypothetical protein | - |
| CDH89_RS26445 () | 60762..61664 | - | 903 | WP_072748701.1 | DUF1281 domain-containing protein | - |
| CDH89_RS26455 () | 62082..62330 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| CDH89_RS26460 () | 62327..62764 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CDH89_RS26465 () | 62764..64035 | + | 1272 | WP_000457523.1 | Y-family DNA polymerase | - |
| CDH89_RS26470 () | 64040..64432 | - | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| CDH89_RS26475 () | 64437..65408 | - | 972 | WP_001103690.1 | hypothetical protein | - |
| CDH89_RS26480 () | 65637..66281 | + | 645 | WP_000633913.1 | AAA family ATPase | - |
| CDH89_RS26485 () | 66275..66550 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| CDH89_RS26490 () | 66688..67470 | - | 783 | WP_001372173.1 | site-specific integrase | - |
| CDH89_RS26495 () | 67538..68146 | - | 609 | WP_000715519.1 | hypothetical protein | - |
| CDH89_RS26500 () | 68216..68566 | - | 351 | WP_088172499.1 | hypothetical protein | - |
| CDH89_RS26510 () | 69137..69718 | + | 582 | WP_000139427.1 | hypothetical protein | - |
| CDH89_RS26515 () | 69898..70233 | + | 336 | WP_000628093.1 | hypothetical protein | - |
| CDH89_RS26520 () | 70221..70868 | + | 648 | WP_000074712.1 | hypothetical protein | - |
| CDH89_RS26525 () | 71039..71323 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| CDH89_RS26530 () | 71343..72476 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| CDH89_RS28390 () | 72938..73333 | + | 396 | WP_157698278.1 | hypothetical protein | - |
| CDH89_RS26545 () | 73367..74071 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH89_RS26550 () | 74163..74858 | + | 696 | WP_072257968.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| CDH89_RS26555 () | 74871..75413 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| CDH89_RS26560 () | 75895..76086 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| CDH89_RS26565 () | 76110..76337 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| CDH89_RS26570 () | 76388..77524 | + | 1137 | WP_000080860.1 | DUF3883 domain-containing protein | - |
| CDH89_RS26575 () | 77639..79010 | + | 1372 | Protein_94 | IS1182 family transposase ISCfr1 | Transposase |
| CDH89_RS26580 () | 79639..79983 | + | 345 | Protein_95 | Tn3 family transposase ISKox2 | Transposase |
| CDH89_RS26590 () | 80048..80752 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| CDH89_RS26600 () | 81027..82040 | - | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| CDH89_RS26605 () | 82189..82980 | + | 792 | WP_032491824.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CDH89_RS26610 () | 83148..83845 | - | 698 | Protein_99 | IS1 family transposase IS1R | Transposase |
| CDH89_RS26620 () | 83901..85301 | + | 1401 | Protein_100 | AAA family ATPase | - |
| CDH89_RS26625 () | 85496..86113 | + | 618 | WP_000521604.1 | hypothetical protein | - |
| CDH89_RS26630 () | 86172..87164 | - | 993 | WP_001579760.1 | hypothetical protein | - |
| CDH89_RS28395 () | 87161..87376 | - | 216 | WP_000841013.1 | hypothetical protein | - |
| CDH89_RS26650 () | 88074..89105 | - | 1032 | WP_000907866.1 | replication initiation protein | - |
| CDH89_RS26665 () | 90078..90341 | + | 264 | WP_001387472.1 | ash family protein | - |
| CDH89_RS26670 () | 90259..90546 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| CDH89_RS26680 () | 90988..91521 | + | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| CDH89_RS26690 () | 91775..92458 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| CDH89_RS26695 () | 92630..92884 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| CDH89_RS26710 () | 93931..94998 | + | 1068 | WP_001360287.1 | hypothetical protein | VF |
| CDH89_RS26715 () | 94998..95435 | + | 438 | WP_000539806.1 | hypothetical protein | VF |
| CDH89_RS26720 () | 95449..97131 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| CDH89_RS26725 () | 97124..98419 | + | 1296 | WP_023518855.1 | type 4b pilus protein PilO2 | - |
| CDH89_RS26730 () | 98406..98858 | + | 453 | WP_001247337.1 | hypothetical protein | VF |
| CDH89_RS26735 () | 98869..100422 | + | 1554 | WP_023518854.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CDH89_RS26740 () | 100435..101520 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CDH89_RS26745 () | 101537..102151 | + | 615 | WP_000908227.1 | hypothetical protein | VF |
| CDH89_RS26750 () | 102161..102721 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| CDH89_RS26755 () | 102706..103362 | + | 657 | WP_001401940.1 | hypothetical protein | VF |
| CDH89_RS26760 () | 103362..104652 | + | 1291 | Protein_120 | hypothetical protein | VF |
| CDH89_RS26785 () | 106182..107336 | + | 1155 | WP_001139955.1 | integrase | - |
| CDH89_RS26790 () | 107487..108311 | + | 825 | WP_023518851.1 | hypothetical protein | - |
| CDH89_RS26795 () | 108397..109599 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| CDH89_RS26800 () | 109659..110243 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| CDH89_RS26805 () | 110638..111096 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| CDH89_RS26810 () | 111093..111911 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| CDH89_RS26815 () | 111908..113056 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| CDH89_RS26820 () | 113053..113343 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| CDH89_RS26825 () | 113358..113909 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| CDH89_RS26830 () | 113999..117766 | + | 3768 | WP_023518849.1 | SogL | - |
| CDH89_RS26835 () | 117784..118131 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| CDH89_RS26840 () | 118128..118820 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| CDH89_RS26845 () | 118831..119814 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| CDH89_RS26850 () | 119817..121106 | + | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| CDH89_RS26855 () | 121106..121810 | + | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| CDH89_RS26860 () | 121810..122337 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| CDH89_RS26865 () | 122388..122792 | + | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| CDH89_RS26870 () | 122856..123044 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| CDH89_RS26875 () | 123028..123828 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|