MGE detailed information
MGE type: Genomic_island MGE length: 105846 bp
Accession: NZ_CP021844 Location: 3909121..4014966 Organism: Escherichia coli strain EC1515 Replicon: chromosome
Accession: NZ_CP021844 Location: 3909121..4014966 Organism: Escherichia coli strain EC1515 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH89_RS19875 () | 3904290..3904877 | + | 588 | WP_001301903.1 | transcriptional regulator BetI | - |
| CDH89_RS19880 () | 3904891..3906363 | + | 1473 | WP_021577045.1 | betaine-aldehyde dehydrogenase | - |
| CDH89_RS19885 () | 3906377..3908065 | + | 1689 | WP_021577044.1 | choline dehydrogenase | - |
| CDH89_RS28315 () | 3908742..3908876 | - | 135 | WP_157698275.1 | hypothetical protein | - |
| CDH89_RS19900 () | 3909121..3909684 | + | 564 | WP_001362381.1 | Tyrosine recombinase XerD | VF |
| CDH89_RS19905 () | 3910014..3910808 | + | 795 | WP_021577043.1 | LuxR family transcriptional regulator HyxR | - |
| CDH89_RS19910 () | 3910962..3911723 | + | 762 | WP_001213049.1 | protein HyxA | - |
| CDH89_RS19915 () | 3911765..3912817 | + | 1053 | Protein_3666 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CDH89_RS19920 () | 3913040..3914233 | + | 1194 | WP_088172493.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CDH89_RS19925 () | 3914415..3915083 | + | 669 | WP_021577041.1 | hypothetical protein | - |
| CDH89_RS19940 () | 3915326..3916021 | - | 696 | WP_021577040.1 | lactate utilization protein C | - |
| CDH89_RS19945 () | 3916014..3917441 | - | 1428 | WP_021577039.1 | iron-sulfur cluster-binding protein | - |
| CDH89_RS19950 () | 3917452..3918171 | - | 720 | WP_021577038.1 | (Fe-S)-binding protein | - |
| CDH89_RS19955 () | 3918699..3919553 | - | 855 | WP_000339588.1 | DNA-binding transcriptional regulator RclR | - |
| CDH89_RS19960 () | 3919779..3921104 | + | 1326 | WP_021577037.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| CDH89_RS19965 () | 3921213..3921449 | + | 237 | WP_000474077.1 | DUF1471 domain-containing protein | - |
| CDH89_RS19970 () | 3921461..3922054 | + | 594 | WP_021577036.1 | reactive chlorine species resistance protein RclC | - |
| CDH89_RS19975 () | 3922214..3923083 | - | 870 | WP_021556518.1 | aldo/keto reductase | - |
| CDH89_RS19980 () | 3923331..3924188 | + | 858 | WP_021577035.1 | Right origin-binding protein | VF |
| CDH89_RS19985 () | 3924309..3928562 | - | 4254 | WP_080030308.1 | Invasin | VF |
| CDH89_RS19990 () | 3929127..3929978 | + | 852 | WP_021577033.1 | aldo/keto reductase | - |
| CDH89_RS19995 () | 3930005..3930994 | + | 990 | WP_001172290.1 | aldo/keto reductase | - |
| CDH89_RS20000 () | 3931026..3931919 | - | 894 | WP_000910718.1 | HTH-type transcriptional regulator PgrR | VF |
| CDH89_RS20005 () | 3932120..3933046 | - | 927 | WP_001307603.1 | HTH-type transcriptional regulator PgrR | VF |
| CDH89_RS20010 () | 3933203..3934123 | + | 921 | WP_000860023.1 | alpha/beta hydrolase | - |
| CDH89_RS20015 () | 3934368..3935510 | + | 1143 | WP_021577031.1 | NADH-dependent flavin oxidoreductase | - |
| CDH89_RS20020 () | 3935984..3936085 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| CDH89_RS20030 () | 3936448..3936711 | + | 264 | WP_024248236.1 | type B 50S ribosomal protein L31 | - |
| CDH89_RS20035 () | 3936711..3936851 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| CDH89_RS20040 () | 3936886..3937052 | - | 167 | Protein_3688 | hypothetical protein | - |
| CDH89_RS20050 () | 3937934..3938476 | + | 543 | WP_001296902.1 | HTH-type transcriptional regulator EcpR | VF |
| CDH89_RS20055 () | 3938551..3939138 | + | 588 | WP_000730974.1 | Common pilus major fimbrillin subunit EcpA | VF |
| CDH89_RS20060 () | 3939196..3939864 | + | 669 | WP_021577028.1 | putative fimbrial chaperone EcpB | VF |
| CDH89_RS20065 () | 3939890..3942415 | + | 2526 | WP_021577027.1 | putative outer membrane usher protein EcpC | VF |
| CDH89_RS20070 () | 3942405..3944048 | + | 1644 | WP_021577026.1 | Fimbria adhesin EcpD | VF |
| CDH89_RS20075 () | 3944017..3944727 | + | 711 | WP_021556513.1 | putative fimbrial chaperone EcpE | VF |
| CDH89_RS20080 () | 3945040..3945369 | + | 330 | WP_001307600.1 | YkgJ family cysteine cluster protein | - |
| CDH89_RS20085 () | 3945616..3946229 | - | 614 | Protein_3696 | YagU family protein | - |
| CDH89_RS28320 () | 3946276..3946485 | - | 210 | WP_021577025.1 | hypothetical protein | - |
| CDH89_RS20095 () | 3946647..3947336 | + | 690 | WP_021577024.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| CDH89_RS20100 () | 3947333..3948289 | + | 957 | WP_000643325.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| CDH89_RS20105 () | 3948286..3950484 | + | 2199 | Protein_3700 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| CDH89_RS20110 () | 3950494..3951450 | + | 957 | WP_088172327.1 | molybdenum cofactor insertion chaperone PaoD | - |
| CDH89_RS20115 () | 3951629..3952756 | - | 1128 | WP_023307640.1 | MFS transporter | - |
| CDH89_RS20120 () | 3952898..3953956 | - | 1059 | WP_021577020.1 | alpha/beta hydrolase | - |
| CDH89_RS20125 () | 3954221..3955105 | + | 885 | WP_001119037.1 | HTH-type transcriptional regulator PgrR | VF |
| CDH89_RS20135 () | 3955807..3956082 | - | 276 | WP_024248231.1 | hypothetical protein | - |
| CDH89_RS20140 () | 3956246..3956968 | - | 723 | WP_021577018.1 | putative oxidoreductase | VF |
| CDH89_RS20145 () | 3957067..3957966 | + | 900 | WP_021577017.1 | HTH-type transcriptional regulator PgrR | VF |
| CDH89_RS20150 () | 3958304..3959623 | + | 1320 | WP_000144688.1 | Prophage integrase IntA ; Integrase | Integrase |
| CDH89_RS20155 () | 3959716..3960564 | - | 849 | WP_039025884.1 | DUF4942 domain-containing protein | - |
| CDH89_RS20160 () | 3960661..3960858 | - | 198 | WP_000772024.1 | DUF957 domain-containing protein | - |
| CDH89_RS20165 () | 3960878..3961366 | - | 489 | Protein_3711 | hypothetical protein | - |
| CDH89_RS20170 () | 3961363..3961740 | - | 378 | WP_039025883.1 | type IV toxin-antitoxin system toxin CbtA | Toxin Detail |
| CDH89_RS20175 () | 3961829..3962197 | - | 369 | WP_039025882.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| CDH89_RS20180 () | 3962247..3962801 | - | 555 | WP_088172326.1 | antitoxin of toxin-antitoxin stability system | - |
| CDH89_RS20185 () | 3962982..3964523 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| CDH89_RS20190 () | 3964538..3965284 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| CDH89_RS20195 () | 3965492..3965713 | - | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| CDH89_RS20200 () | 3965776..3966252 | - | 477 | WP_001186774.1 | RadC family protein | - |
| CDH89_RS20205 () | 3966268..3966753 | - | 486 | WP_001563926.1 | antirestriction protein | - |
| CDH89_RS20210 () | 3966845..3967663 | - | 819 | WP_001598214.1 | DUF945 domain-containing protein | - |
| CDH89_RS20220 () | 3968002..3970848 | - | 2847 | WP_088172325.1 | Ag43/Cah family autotransporter adhesin | - |
| CDH89_RS20225 () | 3971221..3972093 | - | 873 | WP_039025961.1 | GTPase family protein | - |
| CDH89_RS20230 () | 3972357..3973913 | + | 1557 | WP_039025962.1 | type I restriction-modification system subunit M | - |
| CDH89_RS20235 () | 3973910..3974026 | + | 117 | Protein_3724 | restriction endonuclease subunit S | - |
| CDH89_RS20240 () | 3974082..3974779 | + | 698 | Protein_3725 | IS1 family transposase IS1S | Transposase |
| CDH89_RS20245 () | 3974947..3975738 | - | 792 | WP_001682441.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CDH89_RS20250 () | 3975827..3976669 | - | 843 | WP_001456218.1 | alpha/beta fold putative hydrolase EstX | - |
| CDH89_RS20260 () | 3977134..3978627 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| CDH89_RS20265 () | 3978837..3979697 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CDH89_RS20270 () | 3979880..3980068 | - | 189 | Protein_3730 | helix-turn-helix domain-containing protein | - |
| CDH89_RS20280 () | 3980120..3980824 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CDH89_RS20290 () | 3980890..3981387 | + | 498 | Protein_3732 | Tn3 family transposase ISEc63 | Transposase |
| CDH89_RS20295 () | 3981422..3981745 | + | 324 | Protein_3733 | conjugal transfer protein | - |
| CDH89_RS20300 () | 3981990..3982106 | + | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| CDH89_RS20305 () | 3982122..3984041 | + | 1920 | WP_000691727.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| CDH89_RS20310 () | 3984139..3984246 | + | 108 | WP_077248882.1 | hypothetical protein | - |
| CDH89_RS20315 () | 3984299..3985993 | - | 1695 | Protein_3737 | Tn3 family transposase ISKox2 | Transposase |
| CDH89_RS20320 () | 3986054..3986758 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH89_RS20335 () | 3987308..3988321 | - | 1014 | WP_000845054.1 | IS91 family transposase ISAzo26 | Transposase |
| CDH89_RS20340 () | 3988470..3989261 | + | 792 | WP_001682441.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CDH89_RS20345 () | 3989429..3990126 | - | 698 | Protein_3741 | IS1 family transposase IS1R | Transposase |
| CDH89_RS20355 () | 3990546..3990938 | + | 393 | WP_000560765.1 | hypothetical protein | - |
| CDH89_RS20365 () | 3992442..3992855 | + | 414 | Protein_3744 | transposase | - |
| CDH89_RS20370 () | 3993247..3994533 | - | 1287 | WP_000005572.1 | McrC family protein | - |
| CDH89_RS20375 () | 3994526..3996583 | - | 2058 | WP_039025853.1 | AAA family ATPase | - |
| CDH89_RS20385 () | 3997356..3997781 | - | 426 | WP_001013334.1 | hypothetical protein | - |
| CDH89_RS20390 () | 3997778..3998161 | - | 384 | WP_000270989.1 | hypothetical protein | - |
| CDH89_RS20400 () | 3998533..3999126 | - | 594 | WP_039025854.1 | inovirus-type Gp2 protein | - |
| CDH89_RS20405 () | 4000013..4001446 | - | 1434 | WP_000335694.1 | DUF3987 domain-containing protein | - |
| CDH89_RS20410 () | 4001695..4001922 | - | 228 | WP_000120392.1 | DUF3987 domain-containing protein | - |
| CDH89_RS20415 () | 4002028..4002255 | - | 228 | WP_039022145.1 | AlpA family phage regulatory protein | - |
| CDH89_RS20420 () | 4002947..4004584 | + | 1638 | WP_039025855.1 | hypothetical protein | - |
| CDH89_RS20425 () | 4004671..4005267 | - | 597 | WP_047643993.1 | hypothetical protein | - |
| CDH89_RS20435 () | 4005768..4007021 | - | 1254 | WP_021576990.1 | glutamate-5-semialdehyde dehydrogenase | - |
| CDH89_RS20440 () | 4007033..4008136 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| CDH89_RS20445 () | 4008423..4009478 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| CDH89_RS20450 () | 4009517..4009918 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| CDH89_RS20455 () | 4009976..4011220 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 4010636..4010716 | - | 81 | NuclAT_11 | - | - |
| - () | 4010636..4010716 | - | 81 | NuclAT_11 | - | - |
| - () | 4010636..4010716 | - | 81 | NuclAT_11 | - | - |
| - () | 4010636..4010716 | - | 81 | NuclAT_11 | - | - |
| CDH89_RS20460 () | 4011312..4011770 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| CDH89_RS20465 () | 4012031..4013488 | + | 1458 | WP_001293010.1 | cytosol nonspecific dipeptidase | - |
| CDH89_RS20470 () | 4013545..4014066 | - | 522 | Protein_3762 | peptide chain release factor H | - |
| CDH89_RS20475 () | 4014065..4014268 | - | 204 | Protein_3763 | RNA ligase RtcB family protein | - |
| CDH89_RS20480 () | 4014514..4014966 | - | 453 | WP_021576988.1 | GNAT family N-acetyltransferase | - |
| CDH89_RS20485 () | 4014963..4016018 | - | 1056 | WP_001226161.1 | DNA polymerase IV | - |
| CDH89_RS20490 () | 4016089..4017012 | - | 924 | WP_021553260.1 | putative lateral flagellar export/assembly protein LafU | - |
| CDH89_RS20495 () | 4017015..4017878 | - | 864 | WP_001169518.1 | flagellar motor stator protein MotA | - |
| CDH89_RS20500 () | 4017891..4018607 | - | 717 | WP_088172323.1 | FliA/WhiG family RNA polymerase sigma factor | - |
| CDH89_RS20505 () | 4018627..4019094 | - | 468 | WP_000725257.1 | flagellar basal body-associated FliL family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|