MGE detailed information
MGE type: Conjugative plasmid MGE length: 118934 bp
Accession: NZ_CP021841 Location: 1..118934 Organism: Escherichia coli strain EC974 Replicon: plasmid pEC974-1
Accession: NZ_CP021841 Location: 1..118934 Organism: Escherichia coli strain EC974 Replicon: plasmid pEC974-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH88_RS28550 () | 543..779 | + | 237 | WP_088172498.1 | prepilin | - |
| CDH88_RS26080 () | 776..2212 | - | 1437 | WP_015058206.1 | hypothetical protein | VF |
| CDH88_RS26085 () | 2200..2856 | - | 657 | WP_001401940.1 | hypothetical protein | VF |
| CDH88_RS26090 () | 2841..3401 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| CDH88_RS26095 () | 3411..4025 | - | 615 | WP_000908227.1 | hypothetical protein | VF |
| CDH88_RS26100 () | 4042..5127 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CDH88_RS26105 () | 5140..6693 | - | 1554 | WP_023518854.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CDH88_RS26110 () | 6704..7156 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| CDH88_RS26115 () | 7143..8438 | - | 1296 | WP_023518855.1 | type 4b pilus protein PilO2 | - |
| CDH88_RS26120 () | 8431..10113 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| CDH88_RS26125 () | 10127..10564 | - | 438 | WP_000539806.1 | hypothetical protein | VF |
| CDH88_RS26130 () | 10564..11631 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| CDH88_RS26145 () | 12678..12932 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| CDH88_RS26150 () | 13104..13787 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| CDH88_RS26160 () | 14041..14574 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| CDH88_RS26170 () | 15016..15303 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| CDH88_RS26175 () | 15221..15484 | - | 264 | WP_001387472.1 | ash family protein | - |
| CDH88_RS26190 () | 16457..17488 | + | 1032 | WP_000907866.1 | replication initiation protein | - |
| CDH88_RS28340 () | 18186..18401 | + | 216 | WP_000841013.1 | hypothetical protein | - |
| CDH88_RS26210 () | 18398..19390 | + | 993 | WP_001579760.1 | hypothetical protein | - |
| CDH88_RS26215 () | 19449..20066 | - | 618 | WP_000521604.1 | hypothetical protein | - |
| CDH88_RS26220 () | 20261..21661 | - | 1401 | Protein_21 | AAA family ATPase | - |
| CDH88_RS26230 () | 21717..22414 | + | 698 | Protein_22 | IS1 family transposase | - |
| CDH88_RS26235 () | 22582..23373 | - | 792 | WP_032491824.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CDH88_RS26240 () | 23522..24535 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| CDH88_RS26250 () | 24810..25514 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH88_RS26260 () | 25579..25923 | - | 345 | Protein_26 | Tn3 family transposase ISKox2 | Transposase |
| CDH88_RS26265 () | 26552..27923 | - | 1372 | Protein_27 | IS1182 family transposase ISCfr1 | Transposase |
| CDH88_RS26270 () | 28038..29174 | - | 1137 | WP_000080860.1 | DUF3883 domain-containing protein | - |
| CDH88_RS26275 () | 29225..29452 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| CDH88_RS26280 () | 29476..29667 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| CDH88_RS26285 () | 30149..30691 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| CDH88_RS26290 () | 30704..31399 | - | 696 | WP_072257968.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| CDH88_RS26295 () | 31491..32195 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH88_RS28345 () | 32229..32624 | - | 396 | WP_157698278.1 | hypothetical protein | - |
| CDH88_RS26310 () | 33086..34219 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| CDH88_RS26315 () | 34239..34523 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| CDH88_RS26320 () | 34694..35341 | - | 648 | WP_000074712.1 | hypothetical protein | - |
| CDH88_RS26325 () | 35329..35664 | - | 336 | WP_000628093.1 | hypothetical protein | - |
| CDH88_RS26330 () | 35844..36425 | - | 582 | WP_000139427.1 | hypothetical protein | - |
| CDH88_RS26340 () | 36996..37346 | + | 351 | WP_088172499.1 | hypothetical protein | - |
| CDH88_RS26345 () | 37416..38024 | + | 609 | WP_000715519.1 | hypothetical protein | - |
| CDH88_RS26350 () | 38092..38874 | + | 783 | WP_001372173.1 | site-specific integrase | - |
| CDH88_RS26355 () | 39012..39287 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| CDH88_RS26360 () | 39281..39925 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| CDH88_RS26365 () | 40154..41125 | + | 972 | WP_001103690.1 | hypothetical protein | - |
| CDH88_RS26370 () | 41130..41522 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| CDH88_RS26375 () | 41527..42798 | - | 1272 | WP_000457523.1 | Y-family DNA polymerase | - |
| CDH88_RS26380 () | 42798..43235 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CDH88_RS26385 () | 43232..43480 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| CDH88_RS26395 () | 43898..44800 | + | 903 | WP_072748701.1 | DUF1281 domain-containing protein | - |
| CDH88_RS26400 () | 44797..45108 | + | 312 | WP_032072582.1 | hypothetical protein | - |
| CDH88_RS26405 () | 45185..45868 | + | 684 | WP_000086147.1 | DNA methylase | - |
| CDH88_RS26410 () | 45869..46090 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| CDH88_RS26415 () | 46104..46538 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| CDH88_RS28555 () | 46584..47360 | + | 777 | WP_001005023.1 | hypothetical protein | - |
| CDH88_RS26430 () | 47895..48197 | + | 303 | WP_077249901.1 | antirestriction protein | - |
| CDH88_RS26435 () | 48244..48666 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| CDH88_RS26440 () | 48663..48854 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| CDH88_RS26450 () | 48925..49239 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| CDH88_RS26460 () | 49623..50150 | + | 528 | WP_001276107.1 | single-stranded DNA-binding protein | - |
| CDH88_RS26465 () | 50208..50441 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| CDH88_RS26470 () | 50500..52458 | + | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| CDH88_RS26475 () | 52513..52947 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| CDH88_RS26480 () | 52944..53663 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| CDH88_RS26485 () | 53660..54118 | + | 459 | WP_001579745.1 | hypothetical protein | - |
| CDH88_RS26495 () | 54718..55218 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| CDH88_RS26510 () | 55947..56381 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| CDH88_RS26515 () | 56475..56741 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| CDH88_RS26520 () | 56918..57307 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| CDH88_RS26525 () | 57304..58206 | + | 903 | WP_011264057.1 | Recombination-promoting nuclease RpnA | VF |
| CDH88_RS26530 () | 58268..58474 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| CDH88_RS26535 () | 58505..58756 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| CDH88_RS28560 () | 58790..58987 | - | 198 | WP_001161107.1 | hypothetical protein | - |
| CDH88_RS26550 () | 59336..60184 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| CDH88_RS26555 () | 60271..60606 | - | 336 | WP_021529212.1 | hypothetical protein | - |
| CDH88_RS26560 () | 60840..61172 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| CDH88_RS26565 () | 61183..63882 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| CDH88_RS26570 () | 63920..64210 | - | 291 | WP_088172500.1 | conjugal transfer protein TrbC | - |
| CDH88_RS26575 () | 64244..65857 | - | 1614 | WP_000080193.1 | IS66 family transposase ISEc23 | Transposase |
| CDH88_RS26580 () | 65888..66238 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| CDH88_RS26585 () | 66235..66660 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| CDH88_RS26590 () | 66745..68751 | - | 2007 | Protein_82 | conjugal transfer protein TrbC | - |
| CDH88_RS26595 () | 68744..69814 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| CDH88_RS26600 () | 69833..71041 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 71221..71278 | - | 58 | NuclAT_1 | - | - |
| - () | 71221..71278 | - | 58 | NuclAT_1 | - | - |
| - () | 71221..71278 | - | 58 | NuclAT_1 | - | - |
| - () | 71221..71278 | - | 58 | NuclAT_1 | - | - |
| CDH88_RS26605 () | 71348..72097 | - | 750 | Protein_85 | protein finQ | - |
| CDH88_RS26610 () | 72326..72643 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| CDH88_RS26615 () | 72640..73173 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| CDH88_RS26620 () | 73267..74412 | - | 1146 | WP_063859698.1 | Beta-lactamase | ARG |
| CDH88_RS26625 () | 74736..75998 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| CDH88_RS28350 () | 76184..76531 | - | 348 | Protein_90 | protein finQ | - |
| - () | 76734..76794 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 76734..76794 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 76734..76794 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 76734..76794 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| CDH88_RS26635 () | 76846..76998 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| CDH88_RS26640 () | 77070..77321 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| CDH88_RS26645 () | 77621..77917 | + | 297 | WP_011264046.1 | hypothetical protein | - |
| CDH88_RS28565 () | 77982..78158 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| CDH88_RS26650 () | 78550..78759 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| CDH88_RS26655 () | 78831..79493 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CDH88_RS26660 () | 79564..81732 | - | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
| CDH88_RS26665 () | 81829..82413 | - | 585 | WP_001746157.1 | IncI1-type conjugal transfer protein TraX | - |
| CDH88_RS26670 () | 82442..83644 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| CDH88_RS26675 () | 83611..84225 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| CDH88_RS26680 () | 84225..87269 | - | 3045 | WP_023518848.1 | IncI1-type conjugal transfer protein TraU | - |
| CDH88_RS26685 () | 87359..88159 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| CDH88_RS26690 () | 88143..88331 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| CDH88_RS26695 () | 88395..88799 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| CDH88_RS26700 () | 88850..89377 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| CDH88_RS26705 () | 89377..90081 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| CDH88_RS26710 () | 90081..91370 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| CDH88_RS26715 () | 91373..92356 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| CDH88_RS26720 () | 92367..93059 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| CDH88_RS26725 () | 93056..93403 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| CDH88_RS26730 () | 93421..97188 | - | 3768 | WP_023518849.1 | SogL | - |
| CDH88_RS26735 () | 97278..97829 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| CDH88_RS26740 () | 97844..98134 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| CDH88_RS26745 () | 98131..99279 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| CDH88_RS26750 () | 99276..100094 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| CDH88_RS26755 () | 100091..100549 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| CDH88_RS26760 () | 100944..101528 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| CDH88_RS26765 () | 101588..102790 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| CDH88_RS26770 () | 102876..103700 | - | 825 | WP_023518851.1 | hypothetical protein | - |
| CDH88_RS26775 () | 103851..105005 | - | 1155 | WP_001139955.1 | integrase | - |
| CDH88_RS26780 () | 106101..107195 | - | 1095 | Protein_121 | hypothetical protein | VF |
| CDH88_RS26785 () | 107195..107851 | - | 657 | WP_001401940.1 | hypothetical protein | VF |
| CDH88_RS26790 () | 107836..108396 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| CDH88_RS26795 () | 108406..109020 | - | 615 | WP_000908227.1 | hypothetical protein | VF |
| CDH88_RS26800 () | 109037..110122 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CDH88_RS26805 () | 110135..111688 | - | 1554 | WP_023518854.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CDH88_RS26810 () | 111699..112151 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| CDH88_RS26815 () | 112138..113433 | - | 1296 | WP_023518855.1 | type 4b pilus protein PilO2 | - |
| CDH88_RS26820 () | 113426..115108 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| CDH88_RS26825 () | 115122..115559 | - | 438 | WP_000539806.1 | hypothetical protein | VF |
| CDH88_RS26830 () | 115559..116626 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| CDH88_RS26845 () | 117673..117927 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| CDH88_RS26850 () | 118099..118782 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|