MGE detailed information
MGE type: Prophage MGE length: 82787 bp
Accession: NZ_CP021808 Location: 969369..1052155 Organism: Sinorhizobium meliloti strain Rm41 Replicon: chromosome
Accession: NZ_CP021808 Location: 969369..1052155 Organism: Sinorhizobium meliloti strain Rm41 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO27_RS04925 () | 964649..965161 | + | 513 | WP_013844615.1 | sigma-70 family RNA polymerase sigma factor | - |
| CDO27_RS04930 () | 965151..966215 | + | 1065 | WP_010969652.1 | FecR family protein | - |
| CDO27_RS04935 () | 966337..968994 | + | 2658 | WP_014529349.1 | TonB-dependent receptor | - |
| CDO27_RS04940 () | 969369..970181 | + | 813 | WP_014529348.1 | hypothetical protein | - |
| CDO27_RS04945 () | 970203..972056 | + | 1854 | WP_013844617.1 | type I secretion system permease/ATPase | - |
| CDO27_RS04950 () | 972043..973353 | + | 1311 | WP_010969656.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| CDO27_RS04955 () | 973378..974349 | - | 972 | WP_017265202.1 | glycosyltransferase family 2 protein | - |
| CDO27_RS04960 () | 974530..975300 | - | 771 | WP_010969658.1 | hypothetical protein | - |
| CDO27_RS04965 () | 975477..975665 | + | 189 | WP_003530010.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| CDO27_RS04970 () | 975670..976131 | + | 462 | WP_010969659.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| CDO27_RS04980 () | 976990..977196 | + | 207 | WP_015007715.1 | hypothetical protein | - |
| CDO27_RS04985 () | 977451..977723 | + | 273 | WP_015007716.1 | hypothetical protein | - |
| CDO27_RS04990 () | 977734..978042 | - | 309 | WP_015007717.1 | hypothetical protein | - |
| CDO27_RS04995 () | 978154..979128 | - | 975 | WP_041169323.1 | non-homologous end-joining DNA ligase | - |
| CDO27_RS36605 () | 979221..979391 | + | 171 | WP_015007719.1 | hypothetical protein | - |
| CDO27_RS05010 () | 979896..980069 | - | 174 | WP_015007721.1 | DUF3606 domain-containing protein | - |
| CDO27_RS05015 () | 981085..981285 | - | 201 | WP_017264856.1 | hypothetical protein | - |
| CDO27_RS05020 () | 981338..981703 | - | 366 | WP_014526862.1 | hypothetical protein | - |
| CDO27_RS05025 () | 981758..982000 | - | 243 | WP_015007722.1 | hypothetical protein | - |
| CDO27_RS05035 () | 982122..983090 | - | 969 | WP_015007723.1 | chitinase | - |
| CDO27_RS05055 () | 984452..984781 | - | 330 | WP_015007726.1 | hypothetical protein | - |
| CDO27_RS05060 () | 984768..985118 | - | 351 | WP_015007727.1 | hypothetical protein | - |
| CDO27_RS05065 () | 985118..986218 | - | 1101 | WP_015007728.1 | pyocin knob domain-containing protein | - |
| CDO27_RS05070 () | 986230..987738 | - | 1509 | WP_015007729.1 | hypothetical protein | - |
| CDO27_RS36070 () | 988039..988209 | - | 171 | WP_015007731.1 | hypothetical protein | - |
| CDO27_RS05075 () | 988223..990970 | - | 2748 | WP_015007732.1 | phage tail protein | - |
| CDO27_RS05080 () | 990977..991381 | - | 405 | WP_015007733.1 | hypothetical protein | - |
| CDO27_RS05085 () | 991491..991952 | + | 462 | WP_015007734.1 | hypothetical protein | - |
| CDO27_RS05090 () | 991988..992578 | - | 591 | WP_015007735.1 | hypothetical protein | - |
| CDO27_RS05095 () | 992575..993228 | - | 654 | WP_028010016.1 | hypothetical protein | - |
| CDO27_RS05100 () | 993292..993687 | + | 396 | WP_014529559.1 | hypothetical protein | - |
| CDO27_RS05105 () | 993684..995774 | - | 2091 | WP_015007737.1 | phage tail length tape measure family protein | - |
| CDO27_RS05110 () | 995834..996229 | + | 396 | WP_015007738.1 | hypothetical protein | - |
| CDO27_RS05115 () | 996243..996476 | + | 234 | WP_015007739.1 | Arc family DNA-binding protein | - |
| CDO27_RS05120 () | 996506..996835 | - | 330 | WP_041169324.1 | hypothetical protein | - |
| CDO27_RS05125 () | 996838..997239 | - | 402 | WP_015007741.1 | hypothetical protein | - |
| CDO27_RS05130 () | 997254..997739 | - | 486 | WP_011976017.1 | hypothetical protein | - |
| CDO27_RS05135 () | 997741..998166 | - | 426 | WP_015007742.1 | hypothetical protein | - |
| CDO27_RS05140 () | 998373..998816 | - | 444 | WP_015007743.1 | hypothetical protein | - |
| CDO27_RS05145 () | 998816..999853 | - | 1038 | WP_015007744.1 | head morphogenesis protein | - |
| CDO27_RS05150 () | 999932..1000441 | + | 510 | WP_015007745.1 | lipocalin family protein | - |
| CDO27_RS36610 () | 1000599..1000742 | + | 144 | WP_015007746.1 | hypothetical protein | - |
| CDO27_RS05160 () | 1000739..1001104 | - | 366 | WP_015007747.1 | hypothetical protein | - |
| CDO27_RS05165 () | 1001185..1001346 | + | 162 | WP_015007748.1 | hypothetical protein | - |
| CDO27_RS05170 () | 1001367..1001861 | - | 495 | WP_015007749.1 | hypothetical protein | - |
| CDO27_RS05175 () | 1001913..1002254 | - | 342 | WP_015007750.1 | hypothetical protein | - |
| CDO27_RS05180 () | 1002269..1003237 | - | 969 | WP_015007751.1 | DUF2184 domain-containing protein | - |
| CDO27_RS05185 () | 1003263..1003733 | - | 471 | WP_015007752.1 | hypothetical protein | - |
| CDO27_RS05190 () | 1003746..1004891 | - | 1146 | WP_015007753.1 | DUF2213 domain-containing protein | - |
| CDO27_RS05195 () | 1004940..1005788 | + | 849 | WP_015007754.1 | hypothetical protein | - |
| CDO27_RS05200 () | 1005811..1007186 | - | 1376 | Protein_959 | DUF1073 domain-containing protein | - |
| CDO27_RS05205 () | 1007195..1008526 | - | 1332 | WP_015007757.1 | phage terminase large subunit | - |
| CDO27_RS05210 () | 1008530..1009030 | - | 501 | WP_015007758.1 | terminase small subunit | - |
| CDO27_RS05215 () | 1009053..1009328 | + | 276 | WP_013844190.1 | hypothetical protein | - |
| CDO27_RS05220 () | 1009348..1009503 | - | 156 | WP_015007760.1 | hypothetical protein | - |
| CDO27_RS05225 () | 1009594..1009812 | + | 219 | WP_015007761.1 | hypothetical protein | - |
| CDO27_RS05240 () | 1010581..1011198 | - | 618 | WP_015007762.1 | hypothetical protein | - |
| CDO27_RS05245 () | 1011195..1011641 | - | 447 | WP_015007763.1 | hypothetical protein | - |
| CDO27_RS05250 () | 1011638..1012414 | - | 777 | WP_015007764.1 | hypothetical protein | - |
| CDO27_RS05255 () | 1012356..1012751 | - | 396 | WP_038439144.1 | hypothetical protein | - |
| CDO27_RS05260 () | 1013095..1013904 | - | 810 | WP_127641781.1 | hypothetical protein | - |
| CDO27_RS05265 () | 1014002..1014217 | - | 216 | WP_015007767.1 | hypothetical protein | - |
| CDO27_RS05270 () | 1014456..1015586 | - | 1131 | WP_015007769.1 | site-specific DNA-methyltransferase | - |
| CDO27_RS05275 () | 1015583..1015765 | - | 183 | WP_086017957.1 | hypothetical protein | - |
| CDO27_RS05280 () | 1015783..1016160 | - | 378 | WP_003528128.1 | hypothetical protein | - |
| CDO27_RS05290 () | 1016489..1016692 | - | 204 | WP_015007772.1 | hypothetical protein | - |
| CDO27_RS05295 () | 1016826..1017656 | - | 831 | WP_015007773.1 | DUF2312 domain-containing protein | - |
| CDO27_RS05300 () | 1017653..1017895 | - | 243 | WP_015007774.1 | hypothetical protein | - |
| CDO27_RS05305 () | 1018000..1018716 | + | 717 | WP_041169327.1 | helix-turn-helix transcriptional regulator | - |
| CDO27_RS05310 () | 1019113..1019979 | + | 867 | WP_015007777.1 | three-Cys-motif partner protein TcmP | - |
| CDO27_RS05315 () | 1019969..1020715 | - | 747 | WP_015007778.1 | DUF5131 family protein | - |
| CDO27_RS05320 () | 1020965..1021198 | + | 234 | WP_015007779.1 | hypothetical protein | - |
| CDO27_RS05325 () | 1021195..1021455 | + | 261 | WP_015007780.1 | hypothetical protein | - |
| CDO27_RS05330 () | 1021455..1021691 | + | 237 | WP_015007781.1 | hypothetical protein | - |
| CDO27_RS05335 () | 1021691..1022218 | + | 528 | WP_015007782.1 | siphovirus Gp157 family protein | - |
| CDO27_RS05340 () | 1022222..1023184 | + | 963 | WP_015007783.1 | phage recombination protein Bet | - |
| CDO27_RS05345 () | 1023186..1023707 | + | 522 | WP_015007784.1 | hypothetical protein | - |
| CDO27_RS05350 () | 1023704..1024132 | + | 429 | WP_015007785.1 | hypothetical protein | - |
| CDO27_RS05355 () | 1024129..1024443 | + | 315 | WP_015007786.1 | hypothetical protein | - |
| CDO27_RS05360 () | 1024445..1025436 | + | 992 | Protein_988 | DUF5131 family protein | - |
| CDO27_RS05365 () | 1025318..1025971 | + | 654 | WP_127641776.1 | HNH endonuclease | - |
| CDO27_RS05370 () | 1025961..1026668 | + | 708 | WP_015007790.1 | hypothetical protein | - |
| CDO27_RS36075 () | 1026665..1026937 | + | 273 | WP_015007791.1 | hypothetical protein | - |
| CDO27_RS05375 () | 1026946..1027155 | + | 210 | WP_041169378.1 | hypothetical protein | - |
| CDO27_RS05380 () | 1027155..1027574 | + | 420 | WP_015007793.1 | DUF968 domain-containing protein | - |
| CDO27_RS05385 () | 1027571..1028083 | + | 513 | WP_015007794.1 | DUF1643 domain-containing protein | - |
| CDO27_RS05390 () | 1028080..1028271 | + | 192 | WP_015007795.1 | hypothetical protein | - |
| CDO27_RS05395 () | 1028319..1028552 | + | 234 | WP_017267204.1 | hypothetical protein | - |
| CDO27_RS05400 () | 1028539..1029723 | + | 1185 | WP_041169328.1 | hypothetical protein ; Integrase | Integrase |
| CDO27_RS05410 () | 1030015..1030932 | - | 918 | WP_003530005.1 | hypothetical protein | VF |
| CDO27_RS05415 () | 1031109..1031858 | - | 750 | WP_010969660.1 | NUDIX hydrolase | - |
| CDO27_RS05420 () | 1031861..1032967 | - | 1107 | WP_003530001.1 | endonuclease | - |
| CDO27_RS05425 () | 1033118..1033561 | - | 444 | WP_003529999.1 | TIGR02594 family protein | - |
| CDO27_RS05435 () | 1034351..1035685 | - | 1335 | WP_010969662.1 | pilus assembly protein | - |
| CDO27_RS05440 () | 1036218..1037957 | - | 1740 | WP_015007797.1 | TRAP transporter large permease subunit | - |
| CDO27_RS05445 () | 1037954..1038655 | - | 702 | WP_003529993.1 | TRAP transporter small permease subunit | - |
| CDO27_RS05450 () | 1038696..1039835 | - | 1140 | WP_010969663.1 | TRAP transporter substrate-binding protein | - |
| CDO27_RS05455 () | 1040112..1041440 | + | 1329 | WP_010969664.1 | sorbosone dehydrogenase family protein | - |
| CDO27_RS05460 () | 1041625..1043394 | + | 1770 | WP_013844619.1 | tetratricopeptide repeat protein | - |
| CDO27_RS05465 () | 1043685..1044725 | - | 1041 | WP_010969666.1 | cell division protein FtsZ | - |
| CDO27_RS05470 () | 1044951..1045145 | + | 195 | WP_003537108.1 | hypothetical protein | - |
| CDO27_RS05475 () | 1045183..1046895 | - | 1713 | WP_010969667.1 | HAD-IIB family hydrolase | - |
| CDO27_RS05480 () | 1047054..1048094 | - | 1041 | WP_015007798.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CDO27_RS05485 () | 1048082..1050118 | - | 2037 | WP_080599768.1 | iron ABC transporter permease | - |
| CDO27_RS05490 () | 1050126..1051106 | - | 981 | WP_010969670.1 | ABC transporter substrate-binding protein | - |
| CDO27_RS05500 () | 1051488..1051697 | + | 210 | WP_003537120.1 | cold-shock protein | - |
| CDO27_RS05505 () | 1051868..1052155 | + | 288 | WP_003537122.1 | hypothetical protein | - |
| CDO27_RS05510 () | 1052198..1052434 | + | 237 | WP_003537123.1 | 30S ribosomal protein S21 | - |
| CDO27_RS05515 () | 1052750..1053424 | + | 675 | WP_010969671.1 | glutathione S-transferase family protein | - |
| CDO27_RS05520 () | 1053461..1054510 | + | 1050 | WP_010969672.1 | aldo/keto reductase | - |
| CDO27_RS05525 () | 1054732..1055958 | - | 1227 | WP_010969673.1 | PLP-dependent aminotransferase family protein | - |
| CDO27_RS36615 () | 1056633..1056845 | - | 213 | WP_003537011.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|