MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 28772 bp
Accession: NZ_CP021804 Location: 3731388..3760159 Organism: Sinorhizobium meliloti strain T073 Replicon: chromosome
Accession: NZ_CP021804 Location: 3731388..3760159 Organism: Sinorhizobium meliloti strain T073 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO28_RS18415 () | 3726979..3727743 | - | 765 | WP_088195659.1 | LamB/YcsF family protein | - |
| CDO28_RS18420 () | 3728343..3729008 | + | 666 | WP_088195660.1 | GntR family transcriptional regulator | - |
| CDO28_RS18425 () | 3729371..3730252 | + | 882 | WP_088195661.1 | LysR family transcriptional regulator | - |
| CDO28_RS18430 () | 3730261..3730878 | + | 618 | Protein_3500 | BtpA/SgcQ family protein | - |
| CDO28_RS18435 () | 3730883..3731197 | + | 315 | Protein_3501 | LysR family transcriptional regulator | - |
| CDO28_RS18440 () | 3731388..3732392 | + | 1005 | WP_088195663.1 | Type IV secretion system protein VirB11 | VF |
| CDO28_RS18445 () | 3732389..3732733 | + | 345 | WP_088195664.1 | TrbC/VirB2 family protein | - |
| CDO28_RS18450 () | 3732733..3733014 | + | 282 | WP_088195665.1 | VirB3 family type IV secretion system protein | - |
| CDO28_RS18455 () | 3733024..3735528 | + | 2505 | WP_088195666.1 | conjugal transfer protein TrbE | - |
| CDO28_RS18460 () | 3735525..3736295 | + | 771 | WP_088195667.1 | P-type conjugative transfer protein TrbJ | - |
| CDO28_RS18465 () | 3736309..3736614 | + | 306 | WP_088195668.1 | putative entry exclusion protein TrbK-alt | - |
| CDO28_RS18470 () | 3736611..3737966 | + | 1356 | WP_088195669.1 | P-type conjugative transfer protein TrbL | - |
| CDO28_RS18475 () | 3737963..3738652 | + | 690 | WP_088195670.1 | conjugal transfer protein TrbF | - |
| CDO28_RS18480 () | 3738673..3739713 | + | 1041 | WP_192925936.1 | P-type conjugative transfer protein TrbG | - |
| CDO28_RS18485 () | 3739710..3740909 | + | 1200 | WP_088195672.1 | Type IV secretion system protein virB10 | VF |
| CDO28_RS18490 () | 3740906..3741145 | + | 240 | WP_088195673.1 | DUF2274 domain-containing protein | - |
| CDO28_RS35130 () | 3741348..3741767 | - | 420 | WP_153492879.1 | hypothetical protein | - |
| CDO28_RS18500 () | 3742242..3742940 | - | 699 | WP_088195675.1 | RES family NAD+ phosphorylase | - |
| CDO28_RS18505 () | 3742945..3743334 | - | 390 | WP_088195676.1 | MbcA/ParS/Xre antitoxin family protein | - |
| CDO28_RS18510 () | 3743488..3744201 | + | 714 | WP_088195677.1 | hypothetical protein | - |
| CDO28_RS18515 () | 3744194..3744631 | + | 438 | WP_088195678.1 | hypothetical protein | - |
| CDO28_RS18520 () | 3744628..3745080 | + | 453 | WP_088195679.1 | Mov34/MPN/PAD-1 family protein | - |
| CDO28_RS18525 () | 3745080..3746420 | + | 1341 | WP_088195680.1 | ThiF family adenylyltransferase | - |
| CDO28_RS18530 () | 3746551..3749235 | + | 2685 | WP_088195681.1 | PD-(D/E)XK nuclease family protein | - |
| CDO28_RS18535 () | 3749235..3752381 | + | 3147 | WP_088195682.1 | UvrD-helicase domain-containing protein | - |
| CDO28_RS18540 () | 3752654..3753574 | + | 921 | WP_088195683.1 | hypothetical protein | - |
| CDO28_RS18545 () | 3753575..3757168 | + | 3594 | WP_088195684.1 | DEAD/DEAH box helicase | - |
| CDO28_RS18550 () | 3757330..3757947 | + | 618 | WP_094182592.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| CDO28_RS18555 () | 3757940..3758809 | + | 870 | WP_088195685.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| CDO28_RS18560 () | 3759089..3760159 | - | 1071 | WP_088195686.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CDO28_RS18565 () | 3760274..3761419 | + | 1146 | WP_088195687.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| CDO28_RS18570 () | 3761547..3761759 | - | 213 | WP_003535347.1 | cold-shock protein | - |
| CDO28_RS18585 () | 3762591..3763208 | + | 618 | WP_010969551.1 | J domain-containing protein | - |
| CDO28_RS35615 () | 3763478..3764089 | - | 612 | WP_014526852.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|