MGE detailed information
MGE type: Prophage MGE length: 55451 bp
Accession: NZ_CP021800 Location: 269953..325403 Organism: Sinorhizobium meliloti strain USDA1021 Replicon: chromosome
Accession: NZ_CP021800 Location: 269953..325403 Organism: Sinorhizobium meliloti strain USDA1021 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO29_RS01225 () | 266115..266558 | + | 444 | WP_003529999.1 | TIGR02594 family protein | - |
| CDO29_RS01230 () | 266709..267815 | + | 1107 | WP_003530001.1 | endonuclease | - |
| CDO29_RS01235 () | 267818..268567 | + | 750 | WP_010969660.1 | NUDIX hydrolase | - |
| CDO29_RS01240 () | 268744..269661 | + | 918 | WP_003530005.1 | PhzF family phenazine biosynthesis protein | - |
| CDO29_RS01250 () | 269953..271137 | - | 1185 | WP_164832958.1 | hypothetical protein ; Integrase | Integrase |
| CDO29_RS01255 () | 271124..271357 | - | 234 | WP_017267204.1 | hypothetical protein | - |
| CDO29_RS01260 () | 271405..271590 | - | 186 | WP_017271916.1 | hypothetical protein | - |
| CDO29_RS01265 () | 271587..271871 | - | 285 | WP_088203113.1 | hypothetical protein | - |
| CDO29_RS01270 () | 271961..272191 | - | 231 | Protein_243 | hypothetical protein | - |
| CDO29_RS01275 () | 272454..272873 | - | 420 | WP_088203114.1 | DUF968 domain-containing protein | - |
| CDO29_RS01285 () | 273187..273966 | - | 780 | WP_088203116.1 | hypothetical protein | - |
| CDO29_RS01290 () | 273968..274282 | - | 315 | WP_088203117.1 | hypothetical protein | - |
| CDO29_RS01295 () | 274279..274707 | - | 429 | WP_088203118.1 | hypothetical protein | - |
| CDO29_RS01300 () | 274704..275225 | - | 522 | WP_088203119.1 | hypothetical protein | - |
| CDO29_RS01305 () | 275227..276189 | - | 963 | WP_088203120.1 | phage recombination protein Bet | - |
| CDO29_RS01310 () | 276193..276720 | - | 528 | WP_088203121.1 | siphovirus Gp157 family protein | - |
| CDO29_RS01315 () | 276720..276935 | - | 216 | WP_088203122.1 | hypothetical protein | - |
| CDO29_RS01320 () | 276932..277153 | - | 222 | WP_088194487.1 | hypothetical protein | - |
| CDO29_RS01325 () | 277150..277383 | - | 234 | WP_088203123.1 | hypothetical protein | - |
| CDO29_RS01330 () | 277632..278378 | + | 747 | WP_026031291.1 | DUF5131 family protein | - |
| CDO29_RS01335 () | 278375..279196 | - | 822 | WP_088203124.1 | three-Cys-motif partner protein TcmP | - |
| CDO29_RS01345 () | 279600..280316 | - | 717 | WP_017271898.1 | helix-turn-helix transcriptional regulator | - |
| CDO29_RS01350 () | 280421..280663 | + | 243 | WP_015007774.1 | hypothetical protein | - |
| CDO29_RS01355 () | 280660..281358 | + | 699 | Protein_258 | DUF2312 domain-containing protein | - |
| CDO29_RS01360 () | 281828..282031 | + | 204 | WP_088203125.1 | hypothetical protein | - |
| CDO29_RS01370 () | 282361..282735 | + | 375 | WP_027991964.1 | hypothetical protein | - |
| CDO29_RS01375 () | 282762..284771 | + | 2010 | WP_088203127.1 | DNA cytosine methyltransferase | - |
| CDO29_RS01380 () | 284768..284968 | + | 201 | WP_088203128.1 | hypothetical protein | - |
| CDO29_RS01385 () | 284965..286098 | + | 1134 | WP_088203129.1 | site-specific DNA-methyltransferase | - |
| CDO29_RS01390 () | 286337..286552 | + | 216 | WP_088203130.1 | hypothetical protein | - |
| CDO29_RS01395 () | 286888..287283 | + | 396 | WP_088203131.1 | hypothetical protein | - |
| CDO29_RS01400 () | 287225..288001 | + | 777 | WP_088203132.1 | hypothetical protein | - |
| CDO29_RS01405 () | 287998..288399 | + | 402 | WP_088203133.1 | GcrA cell cycle regulator | - |
| CDO29_RS01410 () | 288412..289017 | + | 606 | WP_088203134.1 | hypothetical protein | - |
| CDO29_RS01415 () | 289156..289383 | + | 228 | WP_088203135.1 | immunity protein 32 | - |
| CDO29_RS01420 () | 289453..289704 | - | 252 | WP_088203136.1 | Acyl carrier protein AcpP | VF |
| CDO29_RS01425 () | 289746..289931 | - | 186 | WP_017265617.1 | DUF3606 domain-containing protein | - |
| CDO29_RS01430 () | 290202..290477 | - | 276 | WP_017265615.1 | hypothetical protein | - |
| CDO29_RS01435 () | 290500..291000 | + | 501 | WP_014529537.1 | terminase small subunit | - |
| CDO29_RS01440 () | 291004..292335 | + | 1332 | WP_038439132.1 | phage terminase large subunit | - |
| CDO29_RS01445 () | 292344..293726 | + | 1383 | WP_088203137.1 | DUF1073 domain-containing protein | - |
| CDO29_RS01450 () | 293713..294279 | - | 567 | WP_088203138.1 | hypothetical protein | - |
| CDO29_RS01455 () | 294335..295480 | + | 1146 | WP_088203139.1 | DUF2213 domain-containing protein | - |
| CDO29_RS01460 () | 295493..295963 | + | 471 | WP_088203140.1 | hypothetical protein | - |
| CDO29_RS01465 () | 295989..296957 | + | 969 | WP_088203141.1 | DUF2184 domain-containing protein | - |
| CDO29_RS01470 () | 296972..297313 | + | 342 | WP_088203142.1 | hypothetical protein | - |
| CDO29_RS01475 () | 297365..297859 | + | 495 | WP_088203143.1 | hypothetical protein | - |
| CDO29_RS01480 () | 297883..298044 | - | 162 | WP_088203389.1 | hypothetical protein | - |
| CDO29_RS01485 () | 298125..298490 | + | 366 | WP_088203144.1 | hypothetical protein | - |
| CDO29_RS36880 () | 298487..298630 | - | 144 | WP_015007746.1 | hypothetical protein | - |
| CDO29_RS01495 () | 298788..299297 | - | 510 | WP_088203145.1 | lipocalin family protein | - |
| CDO29_RS01500 () | 299376..300413 | + | 1038 | WP_088203146.1 | head morphogenesis protein | - |
| CDO29_RS01505 () | 300413..300859 | + | 447 | WP_088203147.1 | hypothetical protein | - |
| CDO29_RS01510 () | 301066..301491 | + | 426 | WP_088203148.1 | hypothetical protein | - |
| CDO29_RS01515 () | 301493..301978 | + | 486 | WP_017272431.1 | hypothetical protein | - |
| CDO29_RS01520 () | 301993..302394 | + | 402 | WP_017272432.1 | hypothetical protein | - |
| CDO29_RS01525 () | 302490..302723 | + | 234 | WP_017272451.1 | hypothetical protein | - |
| CDO29_RS01530 () | 302720..303394 | - | 675 | WP_088203149.1 | hypothetical protein | - |
| CDO29_RS01535 () | 303515..303910 | - | 396 | WP_088203150.1 | hypothetical protein | - |
| CDO29_RS01540 () | 303971..306067 | + | 2097 | WP_088203151.1 | phage tail length tape measure family protein | - |
| CDO29_RS01545 () | 306064..306459 | - | 396 | WP_014529559.1 | hypothetical protein | - |
| CDO29_RS01550 () | 306523..307176 | + | 654 | WP_017275434.1 | hypothetical protein | - |
| CDO29_RS01555 () | 307173..307763 | + | 591 | WP_088194463.1 | DUF2163 domain-containing protein | - |
| CDO29_RS01560 () | 307863..308267 | + | 405 | WP_088203152.1 | hypothetical protein | - |
| CDO29_RS01565 () | 308274..311021 | + | 2748 | WP_088203153.1 | phage tail protein | - |
| CDO29_RS01570 () | 311021..312541 | + | 1521 | WP_088203154.1 | hypothetical protein | - |
| CDO29_RS01575 () | 312553..314574 | + | 2022 | WP_088203155.1 | pyocin knob domain-containing S74 family peptidase | - |
| CDO29_RS36285 () | 314726..315055 | - | 330 | WP_028010010.1 | hypothetical protein | - |
| CDO29_RS01600 () | 316276..316545 | - | 270 | WP_088203157.1 | hypothetical protein | - |
| CDO29_RS01605 () | 316723..317691 | + | 969 | WP_088203158.1 | glycoside hydrolase family 19 protein | - |
| CDO29_RS01610 () | 317691..318008 | + | 318 | WP_088203159.1 | ammonia monooxygenase | - |
| CDO29_RS01615 () | 318008..318292 | + | 285 | WP_088203160.1 | hypothetical protein | - |
| CDO29_RS01625 () | 318496..318861 | + | 366 | WP_088203162.1 | hypothetical protein | - |
| CDO29_RS01635 () | 319506..319709 | + | 204 | WP_088203391.1 | hypothetical protein | - |
| CDO29_RS01640 () | 320523..320696 | + | 174 | WP_088203163.1 | DUF3606 domain-containing protein | - |
| CDO29_RS01645 () | 320840..321208 | - | 369 | WP_088203164.1 | hypothetical protein | - |
| CDO29_RS36885 () | 321201..321371 | - | 171 | WP_088203392.1 | hypothetical protein | - |
| CDO29_RS01655 () | 321465..322439 | + | 975 | WP_164832948.1 | non-homologous end-joining DNA ligase | - |
| CDO29_RS01660 () | 322448..322867 | - | 420 | WP_088203166.1 | hypothetical protein | - |
| CDO29_RS01665 () | 323464..323925 | - | 462 | WP_010969659.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| CDO29_RS01670 () | 323930..324118 | - | 189 | WP_088203393.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| CDO29_RS01675 () | 324184..325403 | + | 1220 | WP_088203167.1 | IS3 family transposase ISRm1 | Transposase |
| CDO29_RS01680 () | 325630..326400 | + | 771 | WP_010969658.1 | hypothetical protein | - |
| CDO29_RS01685 () | 326581..327552 | + | 972 | WP_017265202.1 | glycosyltransferase family 2 protein | - |
| CDO29_RS01690 () | 327577..328887 | - | 1311 | WP_010969656.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|