MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 88174 bp
Accession: NZ_CP021775 Location: 5906126..5994299 Organism: Pseudomonas aeruginosa strain Pa58 Replicon: chromosome
Accession: NZ_CP021775 Location: 5906126..5994299 Organism: Pseudomonas aeruginosa strain Pa58 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDL16_RS28620 () | 5901642..5905895 | + | 4254 | WP_034014727.1 | two-partner secretion system exoprotein TpsA4 | - |
| CDL16_RS28625 () | 5906267..5907133 | + | 867 | WP_023108753.1 | ParA family protein | - |
| CDL16_RS28630 () | 5907135..5907872 | + | 738 | WP_023108754.1 | hypothetical protein | - |
| CDL16_RS28635 () | 5907869..5908366 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| CDL16_RS28640 () | 5908372..5908824 | + | 453 | Protein_5544 | hypothetical protein | - |
| CDL16_RS28645 () | 5908885..5909514 | + | 630 | WP_044060901.1 | hypothetical protein | - |
| CDL16_RS28650 () | 5909514..5910215 | + | 702 | WP_023082648.1 | DUF2786 domain-containing protein | - |
| CDL16_RS28655 () | 5910212..5910919 | + | 708 | WP_023082649.1 | HNH endonuclease | - |
| CDL16_RS28660 () | 5910903..5911127 | + | 225 | WP_009315888.1 | hypothetical protein | - |
| CDL16_RS28665 () | 5911124..5912467 | + | 1344 | WP_023082650.1 | replicative DNA helicase | - |
| CDL16_RS35445 () | 5912906..5913352 | - | 447 | WP_003117028.1 | hypothetical protein | - |
| CDL16_RS28675 () | 5914287..5914724 | - | 438 | WP_003157043.1 | hypothetical protein | - |
| CDL16_RS28680 () | 5914902..5915087 | + | 186 | WP_003157042.1 | hypothetical protein | - |
| CDL16_RS28685 () | 5915077..5915604 | + | 528 | WP_003448815.1 | hypothetical protein | - |
| CDL16_RS28690 () | 5915601..5915858 | + | 258 | WP_003448812.1 | hypothetical protein | - |
| CDL16_RS28695 () | 5915851..5916090 | + | 240 | WP_023082652.1 | hypothetical protein | - |
| CDL16_RS28700 () | 5916083..5916316 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| CDL16_RS28705 () | 5916316..5917338 | + | 1023 | WP_010792224.1 | nucleoid-associated protein YejK | - |
| CDL16_RS28710 () | 5917335..5918225 | + | 891 | WP_003119279.1 | DNA adenine methylase | - |
| CDL16_RS28715 () | 5918246..5918515 | + | 270 | WP_023103768.1 | Arc family DNA-binding protein | - |
| CDL16_RS28720 () | 5918512..5920245 | + | 1734 | WP_003448780.1 | ParB family protein | - |
| CDL16_RS28725 () | 5920273..5921028 | + | 756 | WP_003121580.1 | DUF2857 domain-containing protein | - |
| CDL16_RS28730 () | 5921031..5922356 | + | 1326 | WP_031675614.1 | hypothetical protein | - |
| CDL16_RS28745 () | 5925324..5925521 | + | 198 | WP_003105756.1 | hypothetical protein | - |
| CDL16_RS28750 () | 5925678..5926406 | + | 729 | WP_003448749.1 | TIGR03761 family integrating conjugative element protein | - |
| CDL16_RS28755 () | 5926412..5926960 | + | 549 | WP_022579615.1 | DUF3158 family protein | - |
| CDL16_RS28760 () | 5927008..5927838 | + | 831 | WP_023108757.1 | Rha family transcriptional regulator | - |
| CDL16_RS28765 () | 5927868..5928356 | + | 489 | WP_022579618.1 | single-stranded DNA-binding protein | - |
| CDL16_RS28770 () | 5928506..5928817 | + | 312 | WP_022579619.1 | helix-turn-helix domain-containing protein | - |
| CDL16_RS35720 () | 5928768..5929091 | + | 324 | WP_170987004.1 | CrpP family protein | - |
| CDL16_RS28780 () | 5929207..5931126 | + | 1920 | WP_022579620.1 | type I DNA topoisomerase | - |
| CDL16_RS28785 () | 5931134..5931886 | + | 753 | WP_023093669.1 | hypothetical protein | - |
| CDL16_RS28790 () | 5932206..5934095 | + | 1890 | WP_023093670.1 | hypothetical protein | - |
| CDL16_RS28795 () | 5934092..5936068 | + | 1977 | WP_023093671.1 | DEAD/DEAH box helicase | - |
| CDL16_RS28800 () | 5936207..5936542 | + | 336 | WP_022579623.1 | hypothetical protein | - |
| CDL16_RS28805 () | 5936625..5936915 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| CDL16_RS28810 () | 5936912..5937211 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CDL16_RS28815 () | 5937413..5938537 | + | 1125 | WP_023093672.1 | hypothetical protein | VF |
| CDL16_RS28820 () | 5938537..5940246 | + | 1710 | WP_023093673.1 | Outer membrane lipoprotein BfpB | VF |
| CDL16_RS28825 () | 5940250..5941575 | + | 1326 | WP_022579625.1 | type 4b pilus protein PilO2 | - |
| CDL16_RS28830 () | 5941565..5942098 | + | 534 | WP_003149521.1 | type IV pilus biogenesis protein PilP | - |
| CDL16_RS28835 () | 5942107..5943687 | + | 1581 | WP_003149523.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CDL16_RS28840 () | 5943687..5944766 | + | 1080 | WP_003109360.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CDL16_RS28845 () | 5944788..5945318 | + | 531 | WP_003099765.1 | hypothetical protein | VF |
| CDL16_RS28850 () | 5945315..5946271 | + | 957 | WP_023093675.1 | Flp pilus assembly complex ATPase component TadA | - |
| CDL16_RS28855 () | 5946264..5947643 | + | 1380 | WP_022579630.1 | hypothetical protein | VF |
| CDL16_RS28860 () | 5947661..5948098 | + | 438 | WP_003120998.1 | hypothetical protein | VF |
| CDL16_RS28870 () | 5949020..5949586 | + | 567 | WP_003120999.1 | hypothetical protein | - |
| CDL16_RS28875 () | 5949663..5949842 | + | 180 | WP_004347955.1 | hypothetical protein | - |
| CDL16_RS28880 () | 5950301..5950789 | + | 489 | WP_003448595.1 | DUF3577 domain-containing protein | - |
| CDL16_RS35725 () | 5950927..5951085 | + | 159 | WP_003121002.1 | hypothetical protein | - |
| CDL16_RS28885 () | 5951159..5951356 | + | 198 | WP_003448593.1 | hypothetical protein | - |
| CDL16_RS28890 () | 5951548..5952261 | + | 714 | WP_003121003.1 | hypothetical protein | - |
| CDL16_RS28895 () | 5952497..5952847 | + | 351 | WP_003099791.1 | hypothetical protein | - |
| CDL16_RS28900 () | 5952904..5953536 | + | 633 | WP_003099792.1 | DUF3275 family protein | - |
| CDL16_RS28905 () | 5953533..5953808 | + | 276 | WP_003099794.1 | hypothetical protein | - |
| CDL16_RS28910 () | 5953878..5954240 | + | 363 | WP_003099795.1 | hypothetical protein | - |
| CDL16_RS28915 () | 5954308..5954568 | + | 261 | WP_003099797.1 | hypothetical protein | - |
| CDL16_RS28920 () | 5954661..5955266 | + | 606 | WP_003099799.1 | hypothetical protein | - |
| CDL16_RS28925 () | 5955296..5956741 | + | 1446 | WP_003099801.1 | class I SAM-dependent methyltransferase | - |
| CDL16_RS28930 () | 5956846..5959095 | + | 2250 | WP_003099803.1 | DEAD/DEAH box helicase | - |
| CDL16_RS28935 () | 5959416..5959670 | - | 255 | WP_003099808.1 | hypothetical protein | - |
| CDL16_RS28945 () | 5960311..5960508 | - | 198 | WP_003099811.1 | hypothetical protein | - |
| CDL16_RS28950 () | 5960726..5961418 | + | 693 | WP_003123350.1 | hypothetical protein | - |
| CDL16_RS28955 () | 5961429..5962181 | + | 753 | WP_003121010.1 | TIGR03759 family integrating conjugative element protein | - |
| CDL16_RS28960 () | 5962166..5962747 | + | 582 | WP_003121011.1 | hypothetical protein | VF |
| CDL16_RS28965 () | 5962744..5963244 | + | 501 | WP_003121012.1 | integrating conjugative element protein | - |
| CDL16_RS28970 () | 5963253..5963522 | + | 270 | WP_023082675.1 | hypothetical protein | - |
| CDL16_RS28975 () | 5963526..5965757 | + | 2232 | WP_023082676.1 | type IV conjugative transfer system coupling protein TraD | - |
| CDL16_RS28980 () | 5965757..5966503 | + | 747 | WP_009316301.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| CDL16_RS28985 () | 5966521..5967012 | + | 492 | WP_023980742.1 | hypothetical protein | - |
| CDL16_RS28990 () | 5967253..5968734 | + | 1482 | WP_012076865.1 | UvrD-helicase domain-containing protein | - |
| CDL16_RS35450 () | 5968865..5969974 | + | 1110 | WP_157737749.1 | hypothetical protein | - |
| CDL16_RS29000 () | 5970019..5970330 | - | 312 | WP_003117074.1 | DUF2845 domain-containing protein | - |
| CDL16_RS29005 () | 5970503..5970802 | + | 300 | WP_003109393.1 | hypothetical protein | - |
| CDL16_RS29010 () | 5970895..5971233 | + | 339 | WP_020751097.1 | RAQPRD family integrative conjugative element protein | - |
| CDL16_RS29015 () | 5971230..5971469 | + | 240 | WP_023443559.1 | TIGR03758 family integrating conjugative element protein | - |
| CDL16_RS29020 () | 5971487..5971843 | + | 357 | WP_003117077.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| CDL16_RS29025 () | 5971854..5972240 | + | 387 | WP_003117078.1 | TIGR03750 family conjugal transfer protein | - |
| CDL16_RS29030 () | 5972237..5972896 | + | 660 | WP_003117079.1 | TIGR03746 family integrating conjugative element protein | - |
| CDL16_RS29035 () | 5972893..5973777 | + | 885 | WP_003117080.1 | TIGR03749 family integrating conjugative element protein | - |
| CDL16_RS29040 () | 5973761..5975266 | + | 1506 | WP_019416328.1 | TIGR03752 family integrating conjugative element protein | - |
| CDL16_RS29045 () | 5975244..5975687 | + | 444 | WP_003121022.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| CDL16_RS29050 () | 5975687..5978629 | + | 2943 | WP_010792229.1 | conjugative transfer ATPase | - |
| CDL16_RS29055 () | 5978626..5978910 | + | 285 | WP_003099860.1 | hypothetical protein | - |
| CDL16_RS29060 () | 5978907..5979566 | + | 660 | WP_003109405.1 | DsbA family protein | - |
| CDL16_RS29065 () | 5979563..5979781 | - | 219 | WP_003109406.1 | hypothetical protein | - |
| CDL16_RS29080 () | 5981918..5982349 | + | 432 | WP_003111736.1 | TIGR03757 family integrating conjugative element protein | - |
| CDL16_RS29085 () | 5982349..5983287 | + | 939 | WP_003117084.1 | TIGR03756 family integrating conjugative element protein | - |
| CDL16_RS29090 () | 5983305..5984693 | + | 1389 | WP_004352770.1 | integrating conjugative element protein | - |
| CDL16_RS29095 () | 5984693..5985040 | + | 348 | WP_003117086.1 | hypothetical protein | - |
| CDL16_RS29100 () | 5985037..5986572 | + | 1536 | WP_003117087.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| CDL16_RS29105 () | 5986602..5986955 | - | 354 | WP_087921008.1 | hypothetical protein | - |
| CDL16_RS29110 () | 5987074..5987346 | + | 273 | WP_022580142.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CDL16_RS29115 () | 5987350..5987709 | + | 360 | WP_012076884.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CDL16_RS29120 () | 5987719..5988636 | - | 918 | WP_023082681.1 | hypothetical protein | - |
| CDL16_RS29125 () | 5988662..5988901 | - | 240 | WP_023082682.1 | hypothetical protein | - |
| CDL16_RS29130 () | 5989285..5990535 | + | 1251 | WP_003119430.1 | IS256 family transposase ISRso7 | Transposase |
| CDL16_RS29135 () | 5990695..5992617 | + | 1923 | WP_022580137.1 | helicase/relaxase domain-containing protein | - |
| CDL16_RS29140 () | 5992614..5993915 | + | 1302 | WP_003454526.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CDL16_RS29160 () | 5994734..5997298 | - | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| CDL16_RS29165 () | 5997454..5998182 | - | 729 | WP_003134928.1 | peptidoglycan editing factor PgeF | - |
| CDL16_RS29170 () | 5998179..5999141 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|