MGE detailed information
MGE type: Prophage MGE length: 53934 bp
Accession: NZ_CP021726 Location: 1230558..1284491 Organism: Escherichia coli strain Combat11I9 Replicon: chromosome
Accession: NZ_CP021726 Location: 1230558..1284491 Organism: Escherichia coli strain Combat11I9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDC27_RS29340 () | 1226547..1226594 | + | 48 | WP_211180494.1 | protein YnaN | - |
| CDC27_RS06260 () | 1226608..1227591 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| CDC27_RS06270 () | 1228069..1229442 | + | 1374 | WP_021577282.1 | ATP-dependent RNA helicase DbpA | - |
| CDC27_RS06275 () | 1229571..1230506 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| CDC27_RS06280 () | 1230558..1231793 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CDC27_RS06285 () | 1231795..1232010 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| CDC27_RS06290 () | 1232089..1232298 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1232114..1232292 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1232114..1232292 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1232114..1232292 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1232114..1232292 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| CDC27_RS06295 () | 1232291..1232485 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| CDC27_RS06300 () | 1232542..1233351 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| CDC27_RS06305 () | 1233344..1235944 | - | 2601 | WP_072686724.1 | exodeoxyribonuclease VIII | - |
| CDC27_RS06310 () | 1236046..1236321 | - | 276 | WP_072686725.1 | hypothetical protein | - |
| CDC27_RS06315 () | 1236396..1236566 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| CDC27_RS06320 () | 1236566..1236787 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| CDC27_RS06330 () | 1237229..1237717 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| CDC27_RS06335 () | 1237714..1237869 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| CDC27_RS06345 () | 1238269..1238688 | - | 420 | WP_000362155.1 | hypothetical protein | - |
| CDC27_RS06350 () | 1238789..1239070 | + | 282 | WP_000391949.1 | helix-turn-helix domain-containing protein | - |
| CDC27_RS06355 () | 1239054..1239479 | + | 426 | WP_000693836.1 | Rha family transcriptional regulator | - |
| CDC27_RS06360 () | 1239551..1240621 | + | 1071 | WP_001262352.1 | hypothetical protein | - |
| CDC27_RS06365 () | 1240662..1241084 | + | 423 | WP_001151151.1 | DUF977 family protein | - |
| CDC27_RS06370 () | 1241425..1243422 | + | 1998 | WP_001676522.1 | choline BCCT transporter BetT | - |
| CDC27_RS06380 () | 1243486..1244763 | + | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| CDC27_RS06385 () | 1244894..1245775 | - | 882 | WP_000019009.1 | LysR family transcriptional regulator | - |
| CDC27_RS06390 () | 1245772..1246464 | - | 693 | WP_000957772.1 | gamma-glutamylcyclotransferase | - |
| CDC27_RS06395 () | 1246476..1247675 | - | 1200 | WP_072686726.1 | MFS transporter | - |
| CDC27_RS06400 () | 1247980..1248677 | - | 698 | Protein_1165 | IS1 family transposase IS1R | Transposase |
| CDC27_RS06415 () | 1249173..1249328 | + | 156 | WP_096282653.1 | type I toxin-antitoxin system toxin HokD | - |
| CDC27_RS06425 () | 1249792..1250391 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| CDC27_RS06430 () | 1250391..1250681 | + | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| CDC27_RS06435 () | 1250678..1251220 | + | 543 | WP_000640161.1 | DUF1133 family protein | - |
| CDC27_RS06440 () | 1252265..1252693 | + | 429 | WP_000506936.1 | cell envelope integrity protein TolA | - |
| CDC27_RS06445 () | 1252865..1253239 | + | 375 | WP_001348108.1 | hypothetical protein | - |
| CDC27_RS06450 () | 1253491..1253706 | + | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| CDC27_RS06455 () | 1253706..1254203 | + | 498 | WP_001135310.1 | lysozyme RrrD | - |
| CDC27_RS06460 () | 1254420..1254605 | + | 186 | WP_001228688.1 | prophage lysis lipoprotein RzoD | - |
| CDC27_RS06465 () | 1254802..1256259 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| CDC27_RS06475 () | 1256397..1257188 | + | 792 | WP_001291094.1 | ParB/Srx family N-terminal domain-containing protein | - |
| CDC27_RS06480 () | 1257181..1258113 | + | 933 | WP_072686785.1 | hypothetical protein | - |
| CDC27_RS06485 () | 1258049..1258300 | + | 252 | WP_000613571.1 | hypothetical protein | - |
| CDC27_RS06490 () | 1258304..1259398 | + | 1095 | Protein_1179 | terminase small subunit | - |
| CDC27_RS06495 () | 1259379..1260680 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| CDC27_RS06500 () | 1260683..1262089 | + | 1407 | WP_000763704.1 | DUF4055 domain-containing protein | - |
| CDC27_RS06505 () | 1262073..1263185 | + | 1113 | WP_001351715.1 | hypothetical protein | - |
| CDC27_RS06510 () | 1263290..1264054 | + | 765 | WP_000770042.1 | hypothetical protein | - |
| CDC27_RS06515 () | 1264153..1265292 | + | 1140 | WP_000918487.1 | hypothetical protein | - |
| CDC27_RS29130 () | 1265335..1265511 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| CDC27_RS06520 () | 1265515..1265910 | + | 396 | WP_000634214.1 | hypothetical protein | - |
| CDC27_RS06525 () | 1265910..1266293 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| CDC27_RS06530 () | 1266294..1266674 | + | 381 | WP_001029815.1 | hypothetical protein | - |
| CDC27_RS06535 () | 1266671..1267063 | + | 393 | WP_000144678.1 | hypothetical protein | - |
| CDC27_RS06540 () | 1267090..1268052 | + | 963 | WP_072686786.1 | hypothetical protein | - |
| CDC27_RS06545 () | 1268203..1268562 | + | 360 | WP_012565075.1 | hypothetical protein | - |
| CDC27_RS06555 () | 1269036..1272269 | + | 3234 | WP_072686787.1 | phage tail tape measure protein | - |
| CDC27_RS06560 () | 1272262..1272600 | + | 339 | WP_000024051.1 | phage tail protein | - |
| CDC27_RS06565 () | 1272600..1273298 | + | 699 | WP_001152422.1 | phage minor tail protein L | - |
| CDC27_RS06570 () | 1273304..1274047 | + | 744 | WP_001379783.1 | C40 family peptidase | - |
| CDC27_RS06575 () | 1273945..1274592 | + | 648 | WP_000741591.1 | tail assembly protein | - |
| CDC27_RS06580 () | 1274653..1278066 | + | 3414 | Protein_1197 | host specificity protein J | - |
| CDC27_RS06585 () | 1278136..1278735 | + | 600 | WP_001230343.1 | Outer membrane protein X | VF |
| CDC27_RS06590 () | 1278800..1282162 | + | 3363 | WP_072686566.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CDC27_RS06595 () | 1282162..1282737 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| CDC27_RS06600 () | 1282835..1283308 | - | 474 | WP_148119531.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CDC27_RS06605 () | 1283297..1284265 | + | 969 | WP_000654812.1 | IS5 family transposase IS903B | Transposase |
| CDC27_RS06610 () | 1284318..1284491 | - | 174 | Protein_1203 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| CDC27_RS06615 () | 1284808..1285041 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CDC27_RS28950 () | 1285110..1285223 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| CDC27_RS28955 () | 1285563..1285736 | + | 174 | WP_001157926.1 | hypothetical protein | - |
| CDC27_RS06620 () | 1286001..1286435 | - | 435 | WP_001295593.1 | universal stress protein UspF | - |
| CDC27_RS06625 () | 1286576..1287709 | - | 1134 | WP_000837923.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|