NZ_CP021248516238..700050

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 183813 bp
Accession: NZ_CP021248        Location: 516238..700050         Organism: Novosphingobium sp. KA1       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CA833_RS20150 () 512396..512989 - 594 WP_207081235.1 hypothetical protein -
CA833_RS20155 () 512995..513882 - 888 WP_207080950.1 conjugal transfer protein TraF -
CA833_RS20160 () 513879..514475 - 597 WP_207080951.1 S26 family signal peptidase -
CA833_RS20165 () 514447..515178 - 732 WP_207080952.1 conjugal transfer protein TrbC -
CA833_RS20170 () 515309..516403 - 1095 WP_207080953.1 conjugal transfer protein TraN -
CA833_RS20175 () 516400..518331 - 1932 WP_207080954.1 hypothetical protein -
CA833_RS20180 () 518328..518657 - 330 WP_207080955.1 hypothetical protein -
CA833_RS20185 () 518654..519667 - 1014 WP_207080956.1 TraU family protein -
CA833_RS20190 () 519664..520242 - 579 WP_207081236.1 conjugal transfer protein TraW -
CA833_RS20195 () 520292..520528 - 237 WP_207080957.1 hypothetical protein -
CA833_RS20200 () 520525..520851 - 327 WP_207080958.1 hypothetical protein -
CA833_RS20205 () 520848..523394 - 2547 WP_207080959.1 TraC family protein -
CA833_RS20210 () 523391..523999 - 609 WP_207080960.1 TraV family lipoprotein -
CA833_RS20215 () 524024..525370 - 1347 WP_207080961.1 TraB/VirB10 family protein -
CA833_RS20220 () 525367..526155 - 789 WP_207080962.1 type-F conjugative transfer system secretin TraK -
CA833_RS20225 () 526139..526774 - 636 WP_207080963.1 conjugal transfer protein -
CA833_RS20230 () 526780..527046 - 267 WP_008827576.1 membrane protein -
CA833_RS20235 () 527179..527493 - 315 WP_207081237.1 hypothetical protein -
CA833_RS20240 () 527690..528478 - 789 WP_207080964.1 thioredoxin fold domain-containing protein -
CA833_RS20245 () 528603..528779 + 177 WP_207080965.1 hypothetical protein -
CA833_RS20250 () 528948..529370 + 423 WP_207080966.1 hypothetical protein -
CA833_RS20255 () 529512..529922 + 411 WP_010336447.1 helix-turn-helix domain-containing protein -
CA833_RS20260 () 529929..530558 + 630 WP_010336448.1 GntR family transcriptional regulator -
CA833_RS20265 () 530945..531589 + 645 WP_207080967.1 lasso peptide biosynthesis B2 protein -
CA833_RS20270 () 531892..533271 + 1380 WP_207080968.1 asparagine synthase -
CA833_RS20275 () 533287..535281 - 1995 WP_207080969.1 Atxe2 family lasso peptide isopeptidase -
CA833_RS20280 () 535364..537925 - 2562 WP_207081238.1 TonB-dependent receptor -
CA833_RS20285 () 538011..539048 - 1038 WP_207080970.1 FecR domain-containing protein -
CA833_RS20290 () 539045..539596 - 552 WP_207081239.1 sigma-70 family RNA polymerase sigma factor -
CA833_RS20295 () 540172..540516 - 345 WP_103094753.1 MarR family transcriptional regulator -
CA833_RS20300 () 540522..541436 - 915 WP_207081240.1 phytanoyl-CoA dioxygenase family protein -
CA833_RS20305 () 541449..542075 - 627 WP_207080971.1 HTH-type transcriptional regulator MurR VF
CA833_RS20310 () 542163..542918 - 756 WP_207080972.1 autoinducer binding domain-containing protein -
CA833_RS20315 () 542988..543368 - 381 WP_207080973.1 hypothetical protein -
CA833_RS20320 () 543509..544180 - 672 WP_207080974.1 DNA repair protein RadC -
CA833_RS20325 () 544084..544524 - 441 WP_207080975.1 hypothetical protein -
CA833_RS20330 () 544577..544921 - 345 WP_207080976.1 hypothetical protein -
CA833_RS20335 () 544984..545529 - 546 WP_207080977.1 hypothetical protein -
CA833_RS20340 () 545953..546849 + 897 WP_207080978.1 toprim domain-containing protein -
CA833_RS20345 () 546907..547182 - 276 WP_207080979.1 HU family DNA-binding protein -
CA833_RS20350 () 547336..549378 + 2043 WP_207080980.1 ParB N-terminal domain-containing protein -
CA833_RS20355 () 549421..550086 - 666 WP_207080981.1 UPF0149 family protein -
CA833_RS20360 () 550238..554500 + 4263 WP_207080982.1 strawberry notch family protein -
CA833_RS20365 () 554572..555630 - 1059 WP_207080983.1 MucR family transcriptional regulator -
CA833_RS20370 () 555823..556308 + 486 WP_207080984.1 hypothetical protein -
CA833_RS20375 () 556301..556915 + 615 WP_207080985.1 hypothetical protein -
CA833_RS20380 () 557014..557712 + 699 Protein_509 hypothetical protein -
CA833_RS20385 () 557716..558561 + 846 WP_207080986.1 N-6 DNA methylase -
CA833_RS20390 () 558543..560300 - 1758 WP_207081241.1 Sulfur carrier protein FdhD VF
CA833_RS20395 () 560521..561699 + 1179 WP_100206939.1 DUF932 domain-containing protein -
CA833_RS20400 () 561784..561999 + 216 WP_010336363.1 hypothetical protein -
CA833_RS20405 () 562044..563768 + 1725 WP_037524815.1 PRTRC system ParB family protein -
CA833_RS20410 () 563803..564216 + 414 WP_010336366.1 PRTRC system protein E -
CA833_RS20415 () 564271..564477 + 207 WP_010336367.1 hypothetical protein -
CA833_RS20420 () 564489..564716 + 228 WP_010336368.1 hypothetical protein -
CA833_RS20425 () 564820..565677 + 858 Protein_518 hypothetical protein -
CA833_RS20430 () 565689..566519 + 831 WP_010338825.1 PRTRC system protein B -
CA833_RS20435 () 566516..567270 + 755 Protein_520 PRTRC system protein A -
CA833_RS20440 () 567165..567971 + 807 WP_010338823.1 PRTRC system ThiF family protein -
CA833_RS20445 () 568007..568240 + 234 WP_010338822.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin Detail
CA833_RS20450 () 568244..568645 + 402 WP_010338821.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
CA833_RS20455 () 568837..569694 + 858 WP_207080987.1 hypothetical protein -
CA833_RS20460 () 569713..570171 + 459 WP_207080988.1 hypothetical protein -
CA833_RS20465 () 570652..571194 + 543 WP_207080989.1 hypothetical protein -
CA833_RS20470 () 571440..571931 + 492 WP_207080990.1 hypothetical protein -
CA833_RS20475 () 571928..572416 + 489 WP_207080991.1 hypothetical protein -
CA833_RS20480 () 572409..574277 + 1869 WP_207080992.1 hypothetical protein -
CA833_RS20485 () 574497..575557 + 1061 WP_207080371.1 IS630 family transposase ISMno21 Transposase
CA833_RS20490 () 575885..576346 + 462 WP_207080993.1 hypothetical protein -
CA833_RS20495 () 576364..577446 + 1083 WP_207080994.1 hypothetical protein -
CA833_RS20500 () 577539..577703 - 165 WP_207080995.1 hypothetical protein -
CA833_RS20505 () 577798..577953 + 156 WP_207081336.1 hypothetical protein -
CA833_RS20510 () 578000..578443 + 444 WP_207080996.1 hypothetical protein -
CA833_RS20515 () 578466..580040 - 1575 WP_207081242.1 IS66 family transposase ISAzs21 Transposase
CA833_RS20520 () 580170..580523 - 354 WP_009822160.1 IS66 family transposase ISAzs18 Transposase
CA833_RS20525 () 580520..580972 - 453 WP_207080997.1 IS66 family transposase ISFpe1 Transposase
CA833_RS20530 () 581150..582625 + 1476 WP_207080632.1 IS21 family transposase ISBj11 Transposase
CA833_RS20535 () 582622..583479 + 858 WP_207080631.1 IS21 family transposase ISRel5 Transposase
CA833_RS20540 () 583705..583932 + 228 Protein_541 hypothetical protein -
CA833_RS20545 () 584053..585900 - 1848 WP_207080998.1 ThiF family adenylyltransferase -
CA833_RS20550 () 585893..586933 - 1041 WP_207080999.1 hypothetical protein -
CA833_RS20555 () 586945..588078 - 1134 WP_207081000.1 patatin-like phospholipase family protein -
CA833_RS20560 () 588238..589161 + 924 WP_207081001.1 WYL domain-containing protein -
CA833_RS20565 () 589283..590428 + 1146 WP_207081002.1 Tyrosine recombinase XerC ; Integrase Integrase
CA833_RS20570 () 590418..592238 + 1821 WP_207081003.1 site-specific integrase -
CA833_RS20575 () 592243..594045 + 1803 Protein_548 integrase -
CA833_RS20580 () 594029..594493 + 465 WP_207081004.1 hypothetical protein -
CA833_RS20585 () 594921..595202 + 282 WP_207081243.1 hypothetical protein -
CA833_RS20590 () 595739..596083 + 345 WP_207081005.1 hypothetical protein -
CA833_RS20595 () 596923..597390 + 468 WP_207081006.1 DUF736 family protein -
CA833_RS20600 () 597474..597755 + 282 WP_207081007.1 hypothetical protein -
CA833_RS20605 () 597842..598852 + 1011 WP_207081008.1 DUF2493 domain-containing protein -
CA833_RS20610 () 599257..600240 + 984 WP_207081009.1 DUF2493 domain-containing protein -
CA833_RS20615 () 600520..601041 + 522 WP_207081010.1 hypothetical protein -
CA833_RS20620 () 601042..601269 - 228 WP_207081244.1 hypothetical protein -
CA833_RS20625 () 601469..601816 + 348 WP_207081011.1 hypothetical protein -
CA833_RS20635 () 603335..603499 - 165 Protein_560 glutathione S-transferase -
CA833_RS20640 () 603605..605317 - 1713 WP_207081012.1 acyl-CoA dehydrogenase family protein -
CA833_RS20645 () 605348..606925 - 1578 WP_103094795.1 long-chain-fatty-acid--CoA ligase -
CA833_RS20650 () 606950..609250 - 2301 WP_207081013.1 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family -
CA833_RS20655 () 609320..609946 - 627 WP_103094797.1 TetR family transcriptional regulator -
CA833_RS20660 () 610006..610422 + 417 WP_103094825.1 acyl-CoA thioesterase -
CA833_RS20665 () 610419..611918 + 1500 WP_103094798.1 TolC family protein -
CA833_RS20670 () 611915..612919 + 1005 WP_103094799.1 efflux RND transporter periplasmic adaptor subunit -
CA833_RS20675 () 612916..614049 + 1134 WP_103094800.1 ABC transporter permease -
CA833_RS20680 () 614046..615164 + 1119 WP_103094801.1 ABC transporter permease -
CA833_RS20685 () 615232..615594 + 363 WP_207081014.1 enoyl-CoA hydratase/isomerase family protein -
CA833_RS20690 () 615962..618205 + 2244 WP_103094826.1 TonB-dependent receptor -
CA833_RS20695 () 618214..619875 + 1662 WP_207081015.1 AMP-binding protein -
CA833_RS20700 () 619918..621204 - 1287 WP_207081016.1 TetR family transcriptional regulator -
CA833_RS20705 () 621436..621942 + 507 WP_207081245.1 hypothetical protein VF
CA833_RS20710 () 621980..624040 + 2061 WP_207081017.1 enoyl-CoA hydratase/isomerase family protein -
CA833_RS20715 () 624066..625247 + 1182 WP_103094805.1 3-ketoacyl-CoA thiolase VF
CA833_RS20720 () 625267..626016 + 750 WP_207081018.1 electron transfer flavoprotein subunit beta/FixA family protein -
CA833_RS20725 () 626013..626945 + 933 WP_103094807.1 FAD-binding protein -
CA833_RS20730 () 626990..628711 + 1722 WP_207081019.1 acyl-CoA dehydrogenase C-terminal domain-containing protein -
CA833_RS20735 () 628852..629787 + 936 WP_103094808.1 LysR family transcriptional regulator -
CA833_RS20740 () 629952..631034 - 1083 WP_207081020.1 IS5 family transposase ISSsp126 Transposase
CA833_RS20745 () 631201..631815 + 615 WP_103094809.1 TetR/AcrR family transcriptional regulator -
CA833_RS20750 () 632376..633281 + 906 WP_207081021.1 hypothetical protein -
CA833_RS20755 () 633401..633717 + 317 Protein_584 IS3 family transposase ISSpma1 Transposase
CA833_RS20760 () 634079..634342 + 264 WP_103095165.1 Acyl carrier protein VF
CA833_RS20765 () 634336..634638 + 303 WP_103095166.1 integration host factor subunit beta -
CA833_RS20770 () 634569..634862 - 294 WP_207081022.1 cation:proton antiporter -
CA833_RS20775 () 635066..635509 - 444 WP_146037209.1 aspartyl protease family protein -
CA833_RS20780 () 635618..635917 + 300 WP_103095232.1 CopG family transcriptional regulator -
CA833_RS20785 () 635914..638007 + 2094 WP_103095167.1 type IV secretion system DNA-binding domain-containing protein -
CA833_RS20790 () 638004..640958 + 2955 WP_207081023.1 relaxase domain-containing protein -
CA833_RS20795 () 640970..641557 + 588 WP_103095169.1 restriction endonuclease -
CA833_RS20800 () 641599..642081 + 483 WP_103095233.1 lytic transglycosylase domain-containing protein -
CA833_RS20805 () 642101..642442 - 342 WP_103095170.1 DUF4198 domain-containing protein -
CA833_RS20810 () 643602..644000 + 399 WP_207081024.1 hypothetical protein -
CA833_RS20815 () 644222..644623 - 402 Protein_596 LysR family transcriptional regulator -
CA833_RS20820 () 644623..645540 + 918 Protein_597 MFS transporter -
CA833_RS20825 () 645558..646529 + 972 WP_207081025.1 acetylxylan esterase -
CA833_RS20830 () 646947..647390 - 444 WP_207081026.1 Rrf2 family transcriptional regulator -
CA833_RS20835 () 647501..648394 + 894 WP_207081027.1 FAD-dependent oxidoreductase -
CA833_RS20840 () 649052..649516 - 465 WP_207081028.1 GNAT family N-acetyltransferase -
CA833_RS20845 () 649513..649911 - 399 WP_207081029.1 rhodanese-like domain-containing protein -
CA833_RS20850 () 649995..650954 + 960 WP_207081030.1 transcriptional regulator FtrA -
CA833_RS20855 () 650914..651327 - 414 WP_207081031.1 NUDIX domain-containing protein -
CA833_RS20860 () 651363..651899 - 537 WP_207081032.1 pyridoxal-phosphate dependent enzyme -
CA833_RS20865 () 651952..652290 + 339 WP_207081033.1 helix-turn-helix domain-containing protein -
CA833_RS20870 () 652380..652940 - 561 WP_207081034.1 hypothetical protein VF
CA833_RS20875 () 653020..653229 - 210 WP_207081035.1 hypothetical protein -
CA833_RS20885 () 654583..655356 + 774 WP_207081246.1 zinc-binding dehydrogenase -
CA833_RS20890 () 655399..656484 + 1086 WP_207081036.1 DNA polymerase IV -
CA833_RS20895 () 656634..657017 + 384 WP_207081037.1 amino acid-binding protein -
CA833_RS20900 () 657087..657392 + 306 WP_207081038.1 hypothetical protein -
CA833_RS20905 () 657632..657847 - 216 Protein_614 IS3 family transposase ISRtr2 Transposase
CA833_RS20910 () 657864..658931 - 1068 WP_142639180.1 IS110 family transposase ISEc21 Transposase
CA833_RS20915 () 659266..660642 + 1377 WP_207081039.1 IS30 family transposase ISMtsp4 Transposase
CA833_RS20920 () 660683..661608 - 926 Protein_617 IS3 family transposase ISRtr2 Transposase
CA833_RS20925 () 661742..663088 - 1347 WP_207081040.1 diguanylate cyclase -
CA833_RS20930 () 663262..663714 - 453 WP_207081041.1 MarR family transcriptional regulator -
CA833_RS20935 () 663774..665306 + 1533 WP_207081042.1 FAD-dependent monooxygenase -
CA833_RS20940 () 665347..665910 + 564 WP_207081043.1 NAD(P)H-dependent oxidoreductase -
CA833_RS20945 () 666314..667324 - 1011 WP_207081044.1 hypothetical protein -
CA833_RS20950 () 667621..668646 - 1026 WP_207081045.1 DNA topoisomerase IB -
CA833_RS20955 () 668882..669097 + 216 WP_207081046.1 hypothetical protein -
CA833_RS20960 () 669183..669797 + 615 WP_207081047.1 hemerythrin domain-containing protein -
CA833_RS20965 () 669949..670637 + 689 Protein_626 aldehyde dehydrogenase iron-sulfur subunit -
CA833_RS20970 () 670634..671584 + 951 WP_207081048.1 FAD binding domain-containing protein -
CA833_RS20975 () 671581..673779 + 2199 WP_207081049.1 molybdopterin-dependent oxidoreductase -
CA833_RS20980 () 673840..674715 + 876 WP_207081050.1 Ku protein -
CA833_RS20985 () 674719..677235 + 2517 WP_207081051.1 DNA ligase D -
CA833_RS20990 () 677422..678273 + 852 WP_207081052.1 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase VF
CA833_RS20995 () 678318..679553 - 1236 WP_207081053.1 FAD-dependent oxidoreductase -
CA833_RS21000 () 680038..681162 - 1125 WP_207081054.1 mechanosensitive ion channel -
CA833_RS21005 () 681229..681429 + 201 WP_207081055.1 helix-hairpin-helix domain-containing protein -
CA833_RS21010 () 681479..681796 - 318 WP_207081056.1 low affinity iron permease family protein -
CA833_RS21015 () 682677..682940 - 264 WP_207081057.1 hypothetical protein -
CA833_RS21020 () 683190..684131 - 942 WP_207077948.1 IS110 family transposase ISHne5 Transposase
CA833_RS21025 () 684429..685375 + 947 WP_103727307.1 IS630 family transposase ISMex41 Transposase
CA833_RS21030 () 685594..686535 + 942 WP_207077948.1 IS110 family transposase ISHne5 Transposase
CA833_RS21035 () 686922..687137 - 216 WP_207081058.1 hypothetical protein -
CA833_RS21040 () 687917..688918 + 1002 WP_207081059.1 BON domain-containing protein -
CA833_RS21045 () 689069..691459 + 2391 WP_207081247.1 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family -
CA833_RS21050 () 692008..692298 + 291 WP_207081060.1 hypothetical protein -
CA833_RS21055 () 692321..692929 + 609 WP_207081061.1 hypothetical protein -
CA833_RS21060 () 693089..694099 - 1011 WP_207081062.1 sensor histidine kinase -
CA833_RS21070 () 695548..695997 - 450 WP_207081063.1 hypothetical protein -
CA833_RS21075 () 696013..696894 - 882 WP_207081064.1 helix-turn-helix domain-containing protein -
CA833_RS21080 () 697027..697620 - 594 WP_207081065.1 DUF4142 domain-containing protein -
CA833_RS21085 () 698171..698818 + 648 WP_207081066.1 helix-turn-helix domain-containing protein -
CA833_RS21090 () 698863..700020 + 1158 WP_207081067.1 sensor histidine kinase -
CA833_RS21095 () 700363..700659 + 297 WP_207081068.1 plasmid stabilization protein -
CA833_RS21100 () 700673..701413 - 741 WP_207081069.1 alpha/beta fold hydrolase -
CA833_RS21105 () 701410..702534 - 1125 WP_207081070.1 DUF3182 family protein -
CA833_RS21110 () 702748..703158 - 411 WP_207081071.1 low affinity iron permease family protein -
CA833_RS21115 () 703507..703992 - 486 WP_207081248.1 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance