MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 183813 bp
Accession: NZ_CP021248 Location: 516238..700050 Organism: Novosphingobium sp. KA1 Replicon: chromosome
Accession: NZ_CP021248 Location: 516238..700050 Organism: Novosphingobium sp. KA1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CA833_RS20150 () | 512396..512989 | - | 594 | WP_207081235.1 | hypothetical protein | - |
CA833_RS20155 () | 512995..513882 | - | 888 | WP_207080950.1 | conjugal transfer protein TraF | - |
CA833_RS20160 () | 513879..514475 | - | 597 | WP_207080951.1 | S26 family signal peptidase | - |
CA833_RS20165 () | 514447..515178 | - | 732 | WP_207080952.1 | conjugal transfer protein TrbC | - |
CA833_RS20170 () | 515309..516403 | - | 1095 | WP_207080953.1 | conjugal transfer protein TraN | - |
CA833_RS20175 () | 516400..518331 | - | 1932 | WP_207080954.1 | hypothetical protein | - |
CA833_RS20180 () | 518328..518657 | - | 330 | WP_207080955.1 | hypothetical protein | - |
CA833_RS20185 () | 518654..519667 | - | 1014 | WP_207080956.1 | TraU family protein | - |
CA833_RS20190 () | 519664..520242 | - | 579 | WP_207081236.1 | conjugal transfer protein TraW | - |
CA833_RS20195 () | 520292..520528 | - | 237 | WP_207080957.1 | hypothetical protein | - |
CA833_RS20200 () | 520525..520851 | - | 327 | WP_207080958.1 | hypothetical protein | - |
CA833_RS20205 () | 520848..523394 | - | 2547 | WP_207080959.1 | TraC family protein | - |
CA833_RS20210 () | 523391..523999 | - | 609 | WP_207080960.1 | TraV family lipoprotein | - |
CA833_RS20215 () | 524024..525370 | - | 1347 | WP_207080961.1 | TraB/VirB10 family protein | - |
CA833_RS20220 () | 525367..526155 | - | 789 | WP_207080962.1 | type-F conjugative transfer system secretin TraK | - |
CA833_RS20225 () | 526139..526774 | - | 636 | WP_207080963.1 | conjugal transfer protein | - |
CA833_RS20230 () | 526780..527046 | - | 267 | WP_008827576.1 | membrane protein | - |
CA833_RS20235 () | 527179..527493 | - | 315 | WP_207081237.1 | hypothetical protein | - |
CA833_RS20240 () | 527690..528478 | - | 789 | WP_207080964.1 | thioredoxin fold domain-containing protein | - |
CA833_RS20245 () | 528603..528779 | + | 177 | WP_207080965.1 | hypothetical protein | - |
CA833_RS20250 () | 528948..529370 | + | 423 | WP_207080966.1 | hypothetical protein | - |
CA833_RS20255 () | 529512..529922 | + | 411 | WP_010336447.1 | helix-turn-helix domain-containing protein | - |
CA833_RS20260 () | 529929..530558 | + | 630 | WP_010336448.1 | GntR family transcriptional regulator | - |
CA833_RS20265 () | 530945..531589 | + | 645 | WP_207080967.1 | lasso peptide biosynthesis B2 protein | - |
CA833_RS20270 () | 531892..533271 | + | 1380 | WP_207080968.1 | asparagine synthase | - |
CA833_RS20275 () | 533287..535281 | - | 1995 | WP_207080969.1 | Atxe2 family lasso peptide isopeptidase | - |
CA833_RS20280 () | 535364..537925 | - | 2562 | WP_207081238.1 | TonB-dependent receptor | - |
CA833_RS20285 () | 538011..539048 | - | 1038 | WP_207080970.1 | FecR domain-containing protein | - |
CA833_RS20290 () | 539045..539596 | - | 552 | WP_207081239.1 | sigma-70 family RNA polymerase sigma factor | - |
CA833_RS20295 () | 540172..540516 | - | 345 | WP_103094753.1 | MarR family transcriptional regulator | - |
CA833_RS20300 () | 540522..541436 | - | 915 | WP_207081240.1 | phytanoyl-CoA dioxygenase family protein | - |
CA833_RS20305 () | 541449..542075 | - | 627 | WP_207080971.1 | HTH-type transcriptional regulator MurR | VF |
CA833_RS20310 () | 542163..542918 | - | 756 | WP_207080972.1 | autoinducer binding domain-containing protein | - |
CA833_RS20315 () | 542988..543368 | - | 381 | WP_207080973.1 | hypothetical protein | - |
CA833_RS20320 () | 543509..544180 | - | 672 | WP_207080974.1 | DNA repair protein RadC | - |
CA833_RS20325 () | 544084..544524 | - | 441 | WP_207080975.1 | hypothetical protein | - |
CA833_RS20330 () | 544577..544921 | - | 345 | WP_207080976.1 | hypothetical protein | - |
CA833_RS20335 () | 544984..545529 | - | 546 | WP_207080977.1 | hypothetical protein | - |
CA833_RS20340 () | 545953..546849 | + | 897 | WP_207080978.1 | toprim domain-containing protein | - |
CA833_RS20345 () | 546907..547182 | - | 276 | WP_207080979.1 | HU family DNA-binding protein | - |
CA833_RS20350 () | 547336..549378 | + | 2043 | WP_207080980.1 | ParB N-terminal domain-containing protein | - |
CA833_RS20355 () | 549421..550086 | - | 666 | WP_207080981.1 | UPF0149 family protein | - |
CA833_RS20360 () | 550238..554500 | + | 4263 | WP_207080982.1 | strawberry notch family protein | - |
CA833_RS20365 () | 554572..555630 | - | 1059 | WP_207080983.1 | MucR family transcriptional regulator | - |
CA833_RS20370 () | 555823..556308 | + | 486 | WP_207080984.1 | hypothetical protein | - |
CA833_RS20375 () | 556301..556915 | + | 615 | WP_207080985.1 | hypothetical protein | - |
CA833_RS20380 () | 557014..557712 | + | 699 | Protein_509 | hypothetical protein | - |
CA833_RS20385 () | 557716..558561 | + | 846 | WP_207080986.1 | N-6 DNA methylase | - |
CA833_RS20390 () | 558543..560300 | - | 1758 | WP_207081241.1 | Sulfur carrier protein FdhD | VF |
CA833_RS20395 () | 560521..561699 | + | 1179 | WP_100206939.1 | DUF932 domain-containing protein | - |
CA833_RS20400 () | 561784..561999 | + | 216 | WP_010336363.1 | hypothetical protein | - |
CA833_RS20405 () | 562044..563768 | + | 1725 | WP_037524815.1 | PRTRC system ParB family protein | - |
CA833_RS20410 () | 563803..564216 | + | 414 | WP_010336366.1 | PRTRC system protein E | - |
CA833_RS20415 () | 564271..564477 | + | 207 | WP_010336367.1 | hypothetical protein | - |
CA833_RS20420 () | 564489..564716 | + | 228 | WP_010336368.1 | hypothetical protein | - |
CA833_RS20425 () | 564820..565677 | + | 858 | Protein_518 | hypothetical protein | - |
CA833_RS20430 () | 565689..566519 | + | 831 | WP_010338825.1 | PRTRC system protein B | - |
CA833_RS20435 () | 566516..567270 | + | 755 | Protein_520 | PRTRC system protein A | - |
CA833_RS20440 () | 567165..567971 | + | 807 | WP_010338823.1 | PRTRC system ThiF family protein | - |
CA833_RS20445 () | 568007..568240 | + | 234 | WP_010338822.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
CA833_RS20450 () | 568244..568645 | + | 402 | WP_010338821.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
CA833_RS20455 () | 568837..569694 | + | 858 | WP_207080987.1 | hypothetical protein | - |
CA833_RS20460 () | 569713..570171 | + | 459 | WP_207080988.1 | hypothetical protein | - |
CA833_RS20465 () | 570652..571194 | + | 543 | WP_207080989.1 | hypothetical protein | - |
CA833_RS20470 () | 571440..571931 | + | 492 | WP_207080990.1 | hypothetical protein | - |
CA833_RS20475 () | 571928..572416 | + | 489 | WP_207080991.1 | hypothetical protein | - |
CA833_RS20480 () | 572409..574277 | + | 1869 | WP_207080992.1 | hypothetical protein | - |
CA833_RS20485 () | 574497..575557 | + | 1061 | WP_207080371.1 | IS630 family transposase ISMno21 | Transposase |
CA833_RS20490 () | 575885..576346 | + | 462 | WP_207080993.1 | hypothetical protein | - |
CA833_RS20495 () | 576364..577446 | + | 1083 | WP_207080994.1 | hypothetical protein | - |
CA833_RS20500 () | 577539..577703 | - | 165 | WP_207080995.1 | hypothetical protein | - |
CA833_RS20505 () | 577798..577953 | + | 156 | WP_207081336.1 | hypothetical protein | - |
CA833_RS20510 () | 578000..578443 | + | 444 | WP_207080996.1 | hypothetical protein | - |
CA833_RS20515 () | 578466..580040 | - | 1575 | WP_207081242.1 | IS66 family transposase ISAzs21 | Transposase |
CA833_RS20520 () | 580170..580523 | - | 354 | WP_009822160.1 | IS66 family transposase ISAzs18 | Transposase |
CA833_RS20525 () | 580520..580972 | - | 453 | WP_207080997.1 | IS66 family transposase ISFpe1 | Transposase |
CA833_RS20530 () | 581150..582625 | + | 1476 | WP_207080632.1 | IS21 family transposase ISBj11 | Transposase |
CA833_RS20535 () | 582622..583479 | + | 858 | WP_207080631.1 | IS21 family transposase ISRel5 | Transposase |
CA833_RS20540 () | 583705..583932 | + | 228 | Protein_541 | hypothetical protein | - |
CA833_RS20545 () | 584053..585900 | - | 1848 | WP_207080998.1 | ThiF family adenylyltransferase | - |
CA833_RS20550 () | 585893..586933 | - | 1041 | WP_207080999.1 | hypothetical protein | - |
CA833_RS20555 () | 586945..588078 | - | 1134 | WP_207081000.1 | patatin-like phospholipase family protein | - |
CA833_RS20560 () | 588238..589161 | + | 924 | WP_207081001.1 | WYL domain-containing protein | - |
CA833_RS20565 () | 589283..590428 | + | 1146 | WP_207081002.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
CA833_RS20570 () | 590418..592238 | + | 1821 | WP_207081003.1 | site-specific integrase | - |
CA833_RS20575 () | 592243..594045 | + | 1803 | Protein_548 | integrase | - |
CA833_RS20580 () | 594029..594493 | + | 465 | WP_207081004.1 | hypothetical protein | - |
CA833_RS20585 () | 594921..595202 | + | 282 | WP_207081243.1 | hypothetical protein | - |
CA833_RS20590 () | 595739..596083 | + | 345 | WP_207081005.1 | hypothetical protein | - |
CA833_RS20595 () | 596923..597390 | + | 468 | WP_207081006.1 | DUF736 family protein | - |
CA833_RS20600 () | 597474..597755 | + | 282 | WP_207081007.1 | hypothetical protein | - |
CA833_RS20605 () | 597842..598852 | + | 1011 | WP_207081008.1 | DUF2493 domain-containing protein | - |
CA833_RS20610 () | 599257..600240 | + | 984 | WP_207081009.1 | DUF2493 domain-containing protein | - |
CA833_RS20615 () | 600520..601041 | + | 522 | WP_207081010.1 | hypothetical protein | - |
CA833_RS20620 () | 601042..601269 | - | 228 | WP_207081244.1 | hypothetical protein | - |
CA833_RS20625 () | 601469..601816 | + | 348 | WP_207081011.1 | hypothetical protein | - |
CA833_RS20635 () | 603335..603499 | - | 165 | Protein_560 | glutathione S-transferase | - |
CA833_RS20640 () | 603605..605317 | - | 1713 | WP_207081012.1 | acyl-CoA dehydrogenase family protein | - |
CA833_RS20645 () | 605348..606925 | - | 1578 | WP_103094795.1 | long-chain-fatty-acid--CoA ligase | - |
CA833_RS20650 () | 606950..609250 | - | 2301 | WP_207081013.1 | membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | - |
CA833_RS20655 () | 609320..609946 | - | 627 | WP_103094797.1 | TetR family transcriptional regulator | - |
CA833_RS20660 () | 610006..610422 | + | 417 | WP_103094825.1 | acyl-CoA thioesterase | - |
CA833_RS20665 () | 610419..611918 | + | 1500 | WP_103094798.1 | TolC family protein | - |
CA833_RS20670 () | 611915..612919 | + | 1005 | WP_103094799.1 | efflux RND transporter periplasmic adaptor subunit | - |
CA833_RS20675 () | 612916..614049 | + | 1134 | WP_103094800.1 | ABC transporter permease | - |
CA833_RS20680 () | 614046..615164 | + | 1119 | WP_103094801.1 | ABC transporter permease | - |
CA833_RS20685 () | 615232..615594 | + | 363 | WP_207081014.1 | enoyl-CoA hydratase/isomerase family protein | - |
CA833_RS20690 () | 615962..618205 | + | 2244 | WP_103094826.1 | TonB-dependent receptor | - |
CA833_RS20695 () | 618214..619875 | + | 1662 | WP_207081015.1 | AMP-binding protein | - |
CA833_RS20700 () | 619918..621204 | - | 1287 | WP_207081016.1 | TetR family transcriptional regulator | - |
CA833_RS20705 () | 621436..621942 | + | 507 | WP_207081245.1 | hypothetical protein | VF |
CA833_RS20710 () | 621980..624040 | + | 2061 | WP_207081017.1 | enoyl-CoA hydratase/isomerase family protein | - |
CA833_RS20715 () | 624066..625247 | + | 1182 | WP_103094805.1 | 3-ketoacyl-CoA thiolase | VF |
CA833_RS20720 () | 625267..626016 | + | 750 | WP_207081018.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
CA833_RS20725 () | 626013..626945 | + | 933 | WP_103094807.1 | FAD-binding protein | - |
CA833_RS20730 () | 626990..628711 | + | 1722 | WP_207081019.1 | acyl-CoA dehydrogenase C-terminal domain-containing protein | - |
CA833_RS20735 () | 628852..629787 | + | 936 | WP_103094808.1 | LysR family transcriptional regulator | - |
CA833_RS20740 () | 629952..631034 | - | 1083 | WP_207081020.1 | IS5 family transposase ISSsp126 | Transposase |
CA833_RS20745 () | 631201..631815 | + | 615 | WP_103094809.1 | TetR/AcrR family transcriptional regulator | - |
CA833_RS20750 () | 632376..633281 | + | 906 | WP_207081021.1 | hypothetical protein | - |
CA833_RS20755 () | 633401..633717 | + | 317 | Protein_584 | IS3 family transposase ISSpma1 | Transposase |
CA833_RS20760 () | 634079..634342 | + | 264 | WP_103095165.1 | Acyl carrier protein | VF |
CA833_RS20765 () | 634336..634638 | + | 303 | WP_103095166.1 | integration host factor subunit beta | - |
CA833_RS20770 () | 634569..634862 | - | 294 | WP_207081022.1 | cation:proton antiporter | - |
CA833_RS20775 () | 635066..635509 | - | 444 | WP_146037209.1 | aspartyl protease family protein | - |
CA833_RS20780 () | 635618..635917 | + | 300 | WP_103095232.1 | CopG family transcriptional regulator | - |
CA833_RS20785 () | 635914..638007 | + | 2094 | WP_103095167.1 | type IV secretion system DNA-binding domain-containing protein | - |
CA833_RS20790 () | 638004..640958 | + | 2955 | WP_207081023.1 | relaxase domain-containing protein | - |
CA833_RS20795 () | 640970..641557 | + | 588 | WP_103095169.1 | restriction endonuclease | - |
CA833_RS20800 () | 641599..642081 | + | 483 | WP_103095233.1 | lytic transglycosylase domain-containing protein | - |
CA833_RS20805 () | 642101..642442 | - | 342 | WP_103095170.1 | DUF4198 domain-containing protein | - |
CA833_RS20810 () | 643602..644000 | + | 399 | WP_207081024.1 | hypothetical protein | - |
CA833_RS20815 () | 644222..644623 | - | 402 | Protein_596 | LysR family transcriptional regulator | - |
CA833_RS20820 () | 644623..645540 | + | 918 | Protein_597 | MFS transporter | - |
CA833_RS20825 () | 645558..646529 | + | 972 | WP_207081025.1 | acetylxylan esterase | - |
CA833_RS20830 () | 646947..647390 | - | 444 | WP_207081026.1 | Rrf2 family transcriptional regulator | - |
CA833_RS20835 () | 647501..648394 | + | 894 | WP_207081027.1 | FAD-dependent oxidoreductase | - |
CA833_RS20840 () | 649052..649516 | - | 465 | WP_207081028.1 | GNAT family N-acetyltransferase | - |
CA833_RS20845 () | 649513..649911 | - | 399 | WP_207081029.1 | rhodanese-like domain-containing protein | - |
CA833_RS20850 () | 649995..650954 | + | 960 | WP_207081030.1 | transcriptional regulator FtrA | - |
CA833_RS20855 () | 650914..651327 | - | 414 | WP_207081031.1 | NUDIX domain-containing protein | - |
CA833_RS20860 () | 651363..651899 | - | 537 | WP_207081032.1 | pyridoxal-phosphate dependent enzyme | - |
CA833_RS20865 () | 651952..652290 | + | 339 | WP_207081033.1 | helix-turn-helix domain-containing protein | - |
CA833_RS20870 () | 652380..652940 | - | 561 | WP_207081034.1 | hypothetical protein | VF |
CA833_RS20875 () | 653020..653229 | - | 210 | WP_207081035.1 | hypothetical protein | - |
CA833_RS20885 () | 654583..655356 | + | 774 | WP_207081246.1 | zinc-binding dehydrogenase | - |
CA833_RS20890 () | 655399..656484 | + | 1086 | WP_207081036.1 | DNA polymerase IV | - |
CA833_RS20895 () | 656634..657017 | + | 384 | WP_207081037.1 | amino acid-binding protein | - |
CA833_RS20900 () | 657087..657392 | + | 306 | WP_207081038.1 | hypothetical protein | - |
CA833_RS20905 () | 657632..657847 | - | 216 | Protein_614 | IS3 family transposase ISRtr2 | Transposase |
CA833_RS20910 () | 657864..658931 | - | 1068 | WP_142639180.1 | IS110 family transposase ISEc21 | Transposase |
CA833_RS20915 () | 659266..660642 | + | 1377 | WP_207081039.1 | IS30 family transposase ISMtsp4 | Transposase |
CA833_RS20920 () | 660683..661608 | - | 926 | Protein_617 | IS3 family transposase ISRtr2 | Transposase |
CA833_RS20925 () | 661742..663088 | - | 1347 | WP_207081040.1 | diguanylate cyclase | - |
CA833_RS20930 () | 663262..663714 | - | 453 | WP_207081041.1 | MarR family transcriptional regulator | - |
CA833_RS20935 () | 663774..665306 | + | 1533 | WP_207081042.1 | FAD-dependent monooxygenase | - |
CA833_RS20940 () | 665347..665910 | + | 564 | WP_207081043.1 | NAD(P)H-dependent oxidoreductase | - |
CA833_RS20945 () | 666314..667324 | - | 1011 | WP_207081044.1 | hypothetical protein | - |
CA833_RS20950 () | 667621..668646 | - | 1026 | WP_207081045.1 | DNA topoisomerase IB | - |
CA833_RS20955 () | 668882..669097 | + | 216 | WP_207081046.1 | hypothetical protein | - |
CA833_RS20960 () | 669183..669797 | + | 615 | WP_207081047.1 | hemerythrin domain-containing protein | - |
CA833_RS20965 () | 669949..670637 | + | 689 | Protein_626 | aldehyde dehydrogenase iron-sulfur subunit | - |
CA833_RS20970 () | 670634..671584 | + | 951 | WP_207081048.1 | FAD binding domain-containing protein | - |
CA833_RS20975 () | 671581..673779 | + | 2199 | WP_207081049.1 | molybdopterin-dependent oxidoreductase | - |
CA833_RS20980 () | 673840..674715 | + | 876 | WP_207081050.1 | Ku protein | - |
CA833_RS20985 () | 674719..677235 | + | 2517 | WP_207081051.1 | DNA ligase D | - |
CA833_RS20990 () | 677422..678273 | + | 852 | WP_207081052.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
CA833_RS20995 () | 678318..679553 | - | 1236 | WP_207081053.1 | FAD-dependent oxidoreductase | - |
CA833_RS21000 () | 680038..681162 | - | 1125 | WP_207081054.1 | mechanosensitive ion channel | - |
CA833_RS21005 () | 681229..681429 | + | 201 | WP_207081055.1 | helix-hairpin-helix domain-containing protein | - |
CA833_RS21010 () | 681479..681796 | - | 318 | WP_207081056.1 | low affinity iron permease family protein | - |
CA833_RS21015 () | 682677..682940 | - | 264 | WP_207081057.1 | hypothetical protein | - |
CA833_RS21020 () | 683190..684131 | - | 942 | WP_207077948.1 | IS110 family transposase ISHne5 | Transposase |
CA833_RS21025 () | 684429..685375 | + | 947 | WP_103727307.1 | IS630 family transposase ISMex41 | Transposase |
CA833_RS21030 () | 685594..686535 | + | 942 | WP_207077948.1 | IS110 family transposase ISHne5 | Transposase |
CA833_RS21035 () | 686922..687137 | - | 216 | WP_207081058.1 | hypothetical protein | - |
CA833_RS21040 () | 687917..688918 | + | 1002 | WP_207081059.1 | BON domain-containing protein | - |
CA833_RS21045 () | 689069..691459 | + | 2391 | WP_207081247.1 | membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | - |
CA833_RS21050 () | 692008..692298 | + | 291 | WP_207081060.1 | hypothetical protein | - |
CA833_RS21055 () | 692321..692929 | + | 609 | WP_207081061.1 | hypothetical protein | - |
CA833_RS21060 () | 693089..694099 | - | 1011 | WP_207081062.1 | sensor histidine kinase | - |
CA833_RS21070 () | 695548..695997 | - | 450 | WP_207081063.1 | hypothetical protein | - |
CA833_RS21075 () | 696013..696894 | - | 882 | WP_207081064.1 | helix-turn-helix domain-containing protein | - |
CA833_RS21080 () | 697027..697620 | - | 594 | WP_207081065.1 | DUF4142 domain-containing protein | - |
CA833_RS21085 () | 698171..698818 | + | 648 | WP_207081066.1 | helix-turn-helix domain-containing protein | - |
CA833_RS21090 () | 698863..700020 | + | 1158 | WP_207081067.1 | sensor histidine kinase | - |
CA833_RS21095 () | 700363..700659 | + | 297 | WP_207081068.1 | plasmid stabilization protein | - |
CA833_RS21100 () | 700673..701413 | - | 741 | WP_207081069.1 | alpha/beta fold hydrolase | - |
CA833_RS21105 () | 701410..702534 | - | 1125 | WP_207081070.1 | DUF3182 family protein | - |
CA833_RS21110 () | 702748..703158 | - | 411 | WP_207081071.1 | low affinity iron permease family protein | - |
CA833_RS21115 () | 703507..703992 | - | 486 | WP_207081248.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
---|