MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 144210 bp
Accession: NZ_CP021215 Location: 1..144210 Organism: Sinorhizobium meliloti RU11/001 Replicon: plasmid pSmeRU11c
Accession: NZ_CP021215 Location: 1..144210 Organism: Sinorhizobium meliloti RU11/001 Replicon: plasmid pSmeRU11c
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMRU11_RS00780 () | 16..726 | - | 711 | WP_012881194.1 | sulfotransferase family 2 domain-containing protein | - |
| SMRU11_RS00785 () | 842..2752 | - | 1911 | WP_012881193.1 | Bifunctional enzyme CysN/CysC | VF |
| SMRU11_RS00790 () | 2752..3645 | - | 894 | WP_012881192.1 | sulfate adenylyltransferase subunit CysD | - |
| SMRU11_RS38765 () | 3829..3923 | - | 95 | Protein_3 | IS66 family insertion sequence element accessory protein TnpB | - |
| SMRU11_RS39995 () | 3985..4152 | - | 168 | WP_017266040.1 | antitoxin VbhA family protein | - |
| SMRU11_RS00800 () | 4670..5623 | + | 954 | WP_012881190.1 | TauD/TfdA family dioxygenase | - |
| SMRU11_RS00805 () | 5918..6946 | + | 1029 | WP_017265668.1 | ABC transporter substrate-binding protein | - |
| SMRU11_RS00810 () | 6993..7373 | + | 381 | WP_127616760.1 | hypothetical protein | - |
| SMRU11_RS00815 () | 7301..7564 | + | 264 | WP_080590329.1 | ABC transporter permease subunit | - |
| SMRU11_RS00820 () | 7554..8642 | + | 1089 | WP_017265666.1 | Aliphatic sulfonates import ATP-binding protein SsuB | VF |
| SMRU11_RS00825 () | 8734..9930 | + | 1197 | WP_012881186.1 | IS256 family transposase ISRm5 | Transposase |
| SMRU11_RS00830 () | 10054..11532 | - | 1479 | WP_012881185.1 | hypothetical protein | - |
| SMRU11_RS00835 () | 11822..12010 | + | 189 | Protein_12 | integrase | - |
| SMRU11_RS00840 () | 12056..13417 | - | 1362 | WP_012881183.1 | hypothetical protein | - |
| SMRU11_RS00845 () | 13414..14142 | - | 729 | WP_012881182.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| SMRU11_RS00850 () | 14183..17155 | + | 2973 | WP_012881181.1 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| SMRU11_RS00855 () | 17241..17462 | - | 222 | WP_017272061.1 | hypothetical protein | - |
| SMRU11_RS00860 () | 17611..17880 | + | 270 | WP_015061204.1 | hypothetical protein | - |
| SMRU11_RS00865 () | 17965..18561 | + | 597 | WP_012881178.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| SMRU11_RS00870 () | 18568..19782 | - | 1215 | WP_012881177.1 | replication initiation protein RepC | - |
| SMRU11_RS00875 () | 19956..20990 | - | 1035 | WP_017272063.1 | plasmid partitioning protein RepB | - |
| SMRU11_RS00880 () | 20987..22189 | - | 1203 | WP_012881175.1 | Sporulation initiation inhibitor protein Soj | VF |
| SMRU11_RS00885 () | 22418..23305 | - | 888 | WP_012881327.1 | DUF1738 domain-containing protein | - |
| SMRU11_RS00890 () | 23518..24567 | - | 1050 | WP_012881326.1 | Fic family protein | - |
| SMRU11_RS00895 () | 24637..24840 | - | 204 | WP_012881325.1 | antitoxin VbhA family protein | - |
| SMRU11_RS00900 () | 24960..25292 | - | 333 | WP_012881324.1 | DUF736 family protein | - |
| SMRU11_RS00905 () | 25690..26187 | - | 498 | WP_017272064.1 | thermonuclease family protein | - |
| SMRU11_RS00910 () | 26199..27476 | - | 1278 | WP_012881322.1 | replication initiation protein RepC | - |
| SMRU11_RS40000 () | 28052..28243 | - | 192 | Protein_28 | hypothetical protein | - |
| SMRU11_RS00915 () | 28216..28959 | - | 744 | WP_012881321.1 | ParB/RepB/Spo0J family partition protein | - |
| SMRU11_RS00925 () | 30385..31134 | + | 750 | WP_012881319.1 | enoyl-CoA hydratase/isomerase family protein | - |
| SMRU11_RS00930 () | 31593..32033 | - | 441 | WP_012881318.1 | hypothetical protein | - |
| SMRU11_RS00935 () | 32030..32461 | - | 432 | WP_012881317.1 | YeeE/YedE family protein | - |
| SMRU11_RS00945 () | 32898..33188 | - | 291 | WP_017272068.1 | hypothetical protein | - |
| SMRU11_RS00950 () | 33323..33904 | - | 582 | WP_012881315.1 | NAD(P)H-dependent oxidoreductase | - |
| SMRU11_RS00955 () | 33956..34999 | - | 1044 | WP_017273229.1 | alpha/beta hydrolase | - |
| SMRU11_RS00960 () | 35114..37438 | - | 2325 | WP_026029847.1 | heavy metal translocating P-type ATPase | - |
| SMRU11_RS00965 () | 37643..38320 | + | 678 | WP_010967610.1 | DUF1275 domain-containing protein | - |
| SMRU11_RS00970 () | 38472..39722 | + | 1251 | WP_012881312.1 | MgtC/SapB family protein | - |
| SMRU11_RS00975 () | 39902..40744 | + | 843 | WP_010967606.1 | universal stress protein | - |
| SMRU11_RS00980 () | 40854..41927 | + | 1074 | WP_010967605.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| SMRU11_RS00985 () | 41993..44644 | - | 2652 | WP_017272071.1 | HAD-IC family P-type ATPase | - |
| SMRU11_RS00990 () | 44772..45167 | - | 396 | WP_012881310.1 | hypothetical protein | - |
| SMRU11_RS00995 () | 45260..45937 | - | 678 | WP_012881309.1 | BON domain-containing protein | - |
| SMRU11_RS01000 () | 46082..46537 | + | 456 | WP_012881308.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| SMRU11_RS01005 () | 46596..47429 | - | 834 | WP_012881307.1 | universal stress protein | - |
| SMRU11_RS01010 () | 47507..50206 | - | 2700 | WP_012881306.1 | bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase | - |
| SMRU11_RS01015 () | 50312..51898 | - | 1587 | WP_012881305.1 | PAS domain S-box protein | - |
| SMRU11_RS01020 () | 51898..52662 | - | 765 | WP_020479505.1 | helix-turn-helix domain-containing protein | - |
| SMRU11_RS01025 () | 52804..53544 | + | 741 | WP_017272074.1 | Transcriptional regulatory protein OmpR | VF |
| SMRU11_RS01030 () | 53596..54057 | - | 462 | WP_012881302.1 | hypothetical protein | - |
| SMRU11_RS01035 () | 54354..54980 | - | 627 | WP_012881301.1 | hypothetical protein | - |
| SMRU11_RS01040 () | 55028..55267 | - | 240 | WP_012881300.1 | hypothetical protein | - |
| SMRU11_RS01045 () | 55246..55476 | - | 231 | WP_012881299.1 | hypothetical protein | - |
| SMRU11_RS01050 () | 55814..57409 | + | 1596 | WP_012881298.1 | MBL fold metallo-hydrolase | - |
| SMRU11_RS01055 () | 57604..58652 | + | 1049 | Protein_55 | Periplasmic serine endoprotease DegP | VF |
| SMRU11_RS40575 () | 58675..59163 | + | 489 | WP_181409401.1 | PDZ domain-containing protein | - |
| SMRU11_RS01060 () | 59217..60341 | + | 1125 | WP_012881294.1 | site-2 protease family protein | - |
| SMRU11_RS01065 () | 60361..61560 | - | 1200 | WP_012881293.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| SMRU11_RS01070 () | 61564..63927 | - | 2364 | WP_012881292.1 | FtsX-like permease family protein | - |
| SMRU11_RS01075 () | 63933..64652 | - | 720 | WP_012881291.1 | ABC transporter ATP-binding protein | - |
| SMRU11_RS01080 () | 64872..65398 | - | 527 | Protein_61 | Spore protein SP21 | VF |
| SMRU11_RS01090 () | 65804..66304 | - | 501 | WP_012881288.1 | SRPBCC family protein | - |
| SMRU11_RS01095 () | 66301..66504 | - | 204 | WP_012881287.1 | DUF2933 domain-containing protein | - |
| SMRU11_RS01100 () | 66501..68702 | - | 2202 | WP_080591156.1 | copper-translocating P-type ATPase | - |
| SMRU11_RS01105 () | 68804..69478 | + | 675 | WP_012881285.1 | CBS domain-containing protein | - |
| SMRU11_RS01110 () | 69678..72052 | + | 2375 | Protein_66 | phosphoketolase family protein | - |
| SMRU11_RS01115 () | 72146..72769 | + | 624 | WP_012881282.1 | Spy/CpxP family protein refolding chaperone | - |
| SMRU11_RS01120 () | 72914..73237 | - | 324 | Protein_68 | hypothetical protein | - |
| SMRU11_RS01125 () | 73234..73722 | - | 489 | WP_012881280.1 | tryptophan-rich sensory protein | - |
| SMRU11_RS01130 () | 73783..74007 | - | 225 | WP_012881279.1 | DUF378 domain-containing protein | - |
| SMRU11_RS01135 () | 74036..74518 | - | 483 | WP_012881278.1 | fasciclin domain-containing protein | - |
| SMRU11_RS01140 () | 74680..75264 | + | 585 | WP_012881277.1 | XRE family transcriptional regulator | - |
| SMRU11_RS01145 () | 75405..75974 | - | 570 | WP_012881276.1 | TetR/AcrR family transcriptional regulator | - |
| SMRU11_RS01150 () | 76024..76548 | + | 525 | WP_017272078.1 | dihydrofolate reductase family protein | - |
| SMRU11_RS01155 () | 76999..77454 | - | 456 | WP_012881272.1 | hypothetical protein | - |
| SMRU11_RS01160 () | 77758..78093 | + | 336 | WP_017272079.1 | helix-turn-helix domain-containing protein | - |
| SMRU11_RS01165 () | 78642..78953 | + | 312 | WP_003526630.1 | type II toxin-antitoxin system HigB family toxin | - |
| SMRU11_RS01170 () | 78971..79351 | + | 381 | WP_003526626.1 | transcriptional regulator | - |
| SMRU11_RS38770 () | 80136..80300 | + | 165 | Protein_79 | IS30 family transposase | - |
| SMRU11_RS01180 () | 80457..84050 | - | 3594 | WP_012881266.1 | Mobilization protein A | Relaxase |
| SMRU11_RS38775 () | 84284..84679 | + | 396 | WP_012881265.1 | hypothetical protein | - |
| SMRU11_RS01185 () | 85142..85450 | + | 309 | WP_012881263.1 | hypothetical protein | - |
| SMRU11_RS01190 () | 85447..87093 | + | 1647 | WP_012881262.1 | Conjugal transfer protein TraG | VF |
| SMRU11_RS01195 () | 87184..88257 | + | 1074 | WP_012881261.1 | dienelactone hydrolase family protein | - |
| SMRU11_RS01200 () | 88373..88858 | + | 486 | WP_017274827.1 | helix-turn-helix domain-containing protein | - |
| SMRU11_RS01205 () | 89225..90262 | - | 1038 | WP_003537131.1 | IS110 family transposase ISMex9 | Transposase |
| SMRU11_RS01210 () | 90697..90948 | + | 252 | WP_012881257.1 | WGR domain-containing protein | - |
| SMRU11_RS01220 () | 91703..92044 | - | 342 | Protein_88 | WYL domain-containing protein | - |
| SMRU11_RS01225 () | 92176..92940 | - | 765 | WP_012881254.1 | IS21 family transposase ISPve1 | Transposase |
| SMRU11_RS01230 () | 92994..93305 | + | 312 | WP_012881253.1 | hypothetical protein | - |
| SMRU11_RS01235 () | 93376..93639 | - | 264 | WP_012881252.1 | IS630 family transposase ISGdi4 | Transposase |
| SMRU11_RS01240 () | 93722..94965 | + | 1244 | Protein_92 | ISL3 family transposase ISRsp8 | Transposase |
| SMRU11_RS01245 () | 95469..95945 | - | 477 | WP_012881249.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| SMRU11_RS01250 () | 96090..97109 | + | 1020 | WP_012881248.1 | 1-aminocyclopropane-1-carboxylate deaminase | - |
| SMRU11_RS01255 () | 97447..97551 | - | 105 | WP_167389267.1 | helix-turn-helix domain-containing protein | - |
| SMRU11_RS01260 () | 97738..97926 | - | 189 | Protein_96 | ISAs1 family transposase ISRm21 | Transposase |
| SMRU11_RS01265 () | 98062..98907 | - | 846 | WP_017272206.1 | acetylglutamate kinase | - |
| SMRU11_RS01270 () | 98940..100463 | + | 1524 | WP_012881244.1 | hypothetical protein | - |
| SMRU11_RS01275 () | 100533..102764 | + | 2232 | WP_012881243.1 | hypothetical protein | - |
| SMRU11_RS01280 () | 102792..103781 | + | 990 | WP_012881242.1 | hypothetical protein | - |
| SMRU11_RS01285 () | 104107..105714 | + | 1608 | WP_167389268.1 | ISL3 family transposase | - |
| SMRU11_RS01290 () | 105783..106768 | - | 986 | Protein_102 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| SMRU11_RS01295 () | 106916..107783 | + | 868 | Protein_103 | LysR family transcriptional regulator | - |
| SMRU11_RS01300 () | 108230..108523 | - | 294 | WP_012881237.1 | hypothetical protein | - |
| SMRU11_RS01315 () | 110042..110740 | - | 699 | Protein_105 | IS66 family transposase ISSme3 | Transposase |
| SMRU11_RS01320 () | 110789..111116 | - | 328 | Protein_106 | IS66 family transposase IS693 | Transposase |
| SMRU11_RS01325 () | 111113..111558 | - | 446 | Protein_107 | IS66 family transposase ISSme3 | Transposase |
| SMRU11_RS01330 () | 111798..112151 | + | 354 | WP_017266443.1 | phasin family protein | - |
| SMRU11_RS01335 () | 112380..113594 | + | 1215 | WP_012881228.1 | IS701 family transposase ISRm31 | Transposase |
| SMRU11_RS01340 () | 113789..114061 | - | 273 | WP_012881227.1 | hypothetical protein | - |
| SMRU11_RS01345 () | 114510..114791 | + | 282 | WP_017267080.1 | hypothetical protein | - |
| SMRU11_RS01350 () | 114892..115317 | + | 426 | WP_012881225.1 | MucR family transcriptional regulator | - |
| SMRU11_RS40580 () | 115736..116500 | - | 765 | WP_049223499.1 | glycosyl hydrolase | - |
| SMRU11_RS40585 () | 116474..117526 | - | 1053 | Protein_114 | peptidase M16 | - |
| SMRU11_RS01360 () | 117671..118651 | - | 981 | WP_012881223.1 | IS5 family transposase ISAra1 | Transposase |
| SMRU11_RS01370 () | 119157..120146 | + | 990 | WP_012881221.1 | IS5 family transposase ISRm33 | Transposase |
| SMRU11_RS01375 () | 120174..120536 | - | 363 | WP_017265936.1 | DUF1403 family protein | - |
| SMRU11_RS01380 () | 120705..120962 | + | 258 | WP_012881219.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| SMRU11_RS01385 () | 120962..121348 | + | 387 | WP_012881218.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| SMRU11_RS01390 () | 121348..122397 | + | 1050 | WP_012881217.1 | site-specific integrase | - |
| SMRU11_RS01395 () | 122489..125869 | + | 3381 | WP_012881216.1 | DEAD/DEAH box helicase | - |
| SMRU11_RS01400 () | 126093..127727 | + | 1635 | WP_012881215.1 | 60 kDa chaperonin 5 | VF |
| SMRU11_RS01405 () | 128223..128792 | + | 570 | WP_017265933.1 | DUF1003 domain-containing protein | - |
| SMRU11_RS01410 () | 129133..129470 | + | 338 | Protein_124 | recombinase family protein | - |
| SMRU11_RS01415 () | 129639..130004 | - | 366 | WP_017265932.1 | DUF5335 family protein | - |
| SMRU11_RS01420 () | 130070..130468 | + | 399 | WP_012881209.1 | HAD family hydrolase | - |
| SMRU11_RS01425 () | 130529..130768 | + | 240 | WP_017265931.1 | hypothetical protein | - |
| SMRU11_RS01430 () | 130740..130976 | + | 237 | WP_080590350.1 | hypothetical protein | - |
| SMRU11_RS01435 () | 130910..131260 | - | 351 | WP_012881207.1 | hypothetical protein | - |
| SMRU11_RS01440 () | 131257..132174 | - | 918 | WP_012881206.1 | J domain-containing protein | - |
| SMRU11_RS01445 () | 132739..133551 | + | 813 | WP_012881204.1 | class I SAM-dependent methyltransferase | - |
| SMRU11_RS38795 () | 133691..133876 | + | 186 | WP_127616641.1 | hypothetical protein | - |
| SMRU11_RS01455 () | 133974..134801 | - | 828 | WP_012881202.1 | carbohydrate ABC transporter permease | - |
| SMRU11_RS01460 () | 134801..135670 | - | 870 | WP_017266041.1 | sugar ABC transporter permease | - |
| SMRU11_RS01465 () | 135827..137134 | - | 1308 | WP_012881200.1 | extracellular solute-binding protein | - |
| SMRU11_RS01470 () | 137193..138800 | - | 1608 | WP_012881199.1 | sulfatase | - |
| SMRU11_RS01475 () | 139009..139920 | + | 912 | WP_012881198.1 | LysR family transcriptional regulator | - |
| SMRU11_RS01480 () | 140487..142016 | + | 1530 | WP_014531024.1 | IS21 family transposase ISRel16 | Transposase |
| SMRU11_RS01485 () | 142029..142766 | + | 738 | WP_012477343.1 | IS21 family transposase ISRel16 | Transposase |
| SMRU11_RS01495 () | 142892..143500 | - | 609 | Protein_140 | tyrosine-type recombinase/integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|