MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 86642 bp
Accession: NZ_CP021214 Location: 1..86642 Organism: Sinorhizobium meliloti RU11/001 Replicon: plasmid pSmeRU11b
Accession: NZ_CP021214 Location: 1..86642 Organism: Sinorhizobium meliloti RU11/001 Replicon: plasmid pSmeRU11b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMRU11_RS00320 () | 598..1623 | + | 1026 | WP_029728431.1 | IS110 family transposase ISPko7 | Transposase |
| SMRU11_RS00325 () | 1954..2941 | + | 988 | Protein_3 | IS5 family transposase ISRm33 | Transposase |
| SMRU11_RS00330 () | 2999..3490 | - | 492 | Protein_4 | IS5 family transposase ISRm33 | Transposase |
| SMRU11_RS00335 () | 3767..4579 | - | 813 | WP_088194105.1 | IS21 family transposase ISRel5 | Transposase |
| SMRU11_RS00340 () | 4576..6084 | - | 1509 | WP_013843900.1 | IS21 family transposase ISRm9 | Transposase |
| SMRU11_RS00350 () | 6592..7203 | - | 612 | WP_080654729.1 | Adenosine monophosphate-protein transferase | VF |
| SMRU11_RS00355 () | 7807..8052 | + | 246 | Protein_8 | replication protein C | - |
| SMRU11_RS00360 () | 8085..8495 | - | 411 | Protein_9 | IS5 family transposase ISRm33 | Transposase |
| SMRU11_RS00365 () | 8634..9623 | - | 990 | WP_148707574.1 | hypothetical protein | - |
| SMRU11_RS00370 () | 10273..11493 | + | 1221 | WP_088194107.1 | IS256 family transposase ISSpwi2 | Transposase |
| SMRU11_RS00375 () | 11601..11905 | - | 305 | Protein_12 | IS66 family insertion sequence element accessory protein TnpB | - |
| SMRU11_RS00380 () | 11902..12288 | - | 387 | WP_029728468.1 | IS66 family insertion sequence hypothetical protein | - |
| SMRU11_RS00385 () | 12671..14053 | - | 1383 | WP_088194108.1 | IS4 family transposase ISCku4 | Transposase |
| SMRU11_RS00390 () | 14228..14557 | + | 330 | WP_049223425.1 | hypothetical protein | - |
| SMRU11_RS40565 () | 15387..15588 | + | 202 | Protein_16 | hypothetical protein | - |
| SMRU11_RS00400 () | 15655..16284 | - | 630 | WP_033052770.1 | SMC-Scp complex subunit ScpB | - |
| SMRU11_RS00405 () | 16350..17303 | - | 954 | WP_088194109.1 | DUF1403 family protein | - |
| SMRU11_RS00410 () | 17429..18541 | + | 1113 | WP_029728204.1 | site-specific integrase | - |
| SMRU11_RS00415 () | 19079..20184 | + | 1106 | Protein_20 | Fic family protein | - |
| SMRU11_RS00420 () | 20181..21095 | + | 915 | Protein_21 | Tn3 family transposase ISPsy42 | Transposase |
| SMRU11_RS00425 () | 21104..22423 | - | 1320 | WP_029728200.1 | replication initiation protein RepC | - |
| SMRU11_RS00430 () | 22639..23646 | - | 1008 | WP_029728199.1 | plasmid partitioning protein RepB | - |
| SMRU11_RS00435 () | 23840..25057 | - | 1218 | WP_029728198.1 | Sporulation initiation inhibitor protein Soj | VF |
| SMRU11_RS00440 () | 25417..26055 | + | 639 | WP_029728197.1 | Acyl-homoserine-lactone synthase | VF |
| SMRU11_RS00445 () | 26052..27023 | + | 972 | WP_029728194.1 | Type IV secretion system protein VirB11 | VF |
| SMRU11_RS00450 () | 27013..27417 | + | 405 | WP_029728192.1 | conjugal transfer pilin TrbC | - |
| SMRU11_RS00455 () | 27410..27709 | + | 300 | WP_029728190.1 | conjugal transfer protein TrbD | - |
| SMRU11_RS00460 () | 27721..30183 | + | 2463 | Protein_29 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| SMRU11_RS00465 () | 30155..30958 | + | 804 | WP_049223460.1 | P-type conjugative transfer protein TrbJ | - |
| SMRU11_RS00470 () | 30955..31179 | + | 225 | WP_080654708.1 | entry exclusion protein TrbK | - |
| SMRU11_RS00475 () | 31173..32363 | + | 1191 | WP_029728188.1 | P-type conjugative transfer protein TrbL | - |
| SMRU11_RS00480 () | 32379..33041 | + | 663 | WP_029728187.1 | conjugal transfer protein TrbF | - |
| SMRU11_RS00485 () | 33092..33331 | + | 240 | Protein_34 | P-type conjugative transfer protein TrbG | - |
| SMRU11_RS00490 () | 33410..34242 | + | 833 | Protein_35 | IS5 family transposase ISRtr4 | Transposase |
| SMRU11_RS00495 () | 34288..34848 | + | 561 | WP_080654725.1 | P-type conjugative transfer protein TrbG | - |
| SMRU11_RS00500 () | 34848..35327 | + | 480 | WP_029728392.1 | conjugal transfer protein TrbH | - |
| SMRU11_RS38745 () | 35339..35485 | + | 147 | Protein_38 | conjugal transfer protein TrbI | - |
| SMRU11_RS38750 () | 35494..35739 | + | 246 | WP_146722648.1 | hypothetical protein | - |
| SMRU11_RS38755 () | 35708..36277 | + | 570 | WP_148707575.1 | hypothetical protein | - |
| SMRU11_RS00510 () | 36488..37249 | + | 762 | WP_029728389.1 | hypothetical protein | - |
| SMRU11_RS00515 () | 37246..38325 | + | 1080 | WP_029728388.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| SMRU11_RS00520 () | 38376..38855 | + | 480 | Protein_43 | 60 kDa chaperonin 1 | VF |
| SMRU11_RS39975 () | 40003..40371 | - | 369 | WP_080654731.1 | phage integrase N-terminal SAM-like domain-containing protein | - |
| SMRU11_RS00540 () | 40490..41266 | - | 777 | WP_003535037.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| SMRU11_RS00545 () | 41285..42440 | - | 1156 | Protein_46 | amino acid ABC transporter permease | - |
| SMRU11_RS00550 () | 42445..43626 | - | 1182 | WP_088194110.1 | amino acid ABC transporter permease | - |
| SMRU11_RS00555 () | 44268..44672 | + | 405 | Protein_48 | transposase | - |
| SMRU11_RS00560 () | 44805..45692 | + | 888 | Protein_49 | ISL3 family transposase | - |
| SMRU11_RS00565 () | 45822..48730 | + | 2909 | Protein_50 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| SMRU11_RS00570 () | 48746..50314 | + | 1569 | WP_088194111.1 | hypothetical protein | - |
| SMRU11_RS00575 () | 50456..50984 | + | 529 | Protein_52 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| SMRU11_RS00580 () | 50981..51358 | + | 378 | Protein_53 | hypothetical protein | - |
| SMRU11_RS00585 () | 51896..52708 | - | 813 | WP_088194105.1 | IS21 family transposase ISRel5 | Transposase |
| SMRU11_RS00590 () | 52705..54213 | - | 1509 | WP_012477324.1 | IS21 family transposase ISRm9 | Transposase |
| SMRU11_RS00595 () | 54379..55551 | + | 1173 | Protein_56 | ISNCY family transposase ISRm17 | Transposase |
| SMRU11_RS00600 () | 55758..57992 | - | 2235 | WP_050574243.1 | hypothetical protein | - |
| SMRU11_RS39980 () | 58541..58741 | + | 201 | WP_158529805.1 | hypothetical protein | - |
| SMRU11_RS00610 () | 58990..60011 | - | 1022 | Protein_59 | IS110 family transposase ISMdi12 | Transposase |
| SMRU11_RS00615 () | 60100..60561 | - | 462 | Protein_60 | hypothetical protein | - |
| SMRU11_RS00625 () | 61525..61926 | - | 402 | WP_029728330.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| SMRU11_RS00630 () | 61926..62162 | - | 237 | WP_029728331.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| SMRU11_RS00635 () | 62747..63214 | - | 468 | Protein_63 | Tn3 family transposase TnpA_ISMex22 | Transposase |
| SMRU11_RS00640 () | 63389..64897 | + | 1509 | WP_088194112.1 | IS21 family transposase ISRm9 | Transposase |
| SMRU11_RS00645 () | 64894..65707 | + | 814 | Protein_65 | IS21 family transposase ISRel5 | Transposase |
| SMRU11_RS00650 () | 66000..66205 | - | 206 | Protein_66 | Tn3 family transposase TnpA_ISMex22 | Transposase |
| SMRU11_RS00655 () | 66398..67081 | - | 684 | WP_017273848.1 | IS6 family transposase ISPko6 | Transposase |
| SMRU11_RS00660 () | 67182..67433 | + | 252 | WP_088194113.1 | hypothetical protein | - |
| SMRU11_RS00665 () | 67430..67642 | - | 213 | WP_029728417.1 | antitoxin VbhA family protein | - |
| SMRU11_RS00670 () | 67656..68030 | - | 375 | WP_029728418.1 | transcriptional regulator | - |
| SMRU11_RS00675 () | 68027..68311 | - | 285 | WP_029728419.1 | hypothetical protein | - |
| SMRU11_RS00680 () | 68366..68677 | - | 312 | WP_050574251.1 | hypothetical protein | - |
| SMRU11_RS00685 () | 68846..69604 | - | 759 | Protein_73 | methyltransferase | - |
| SMRU11_RS00695 () | 69941..70369 | - | 429 | Protein_74 | IS21 family transposase ISPve1 | Transposase |
| SMRU11_RS00700 () | 70839..72908 | + | 2070 | WP_017273893.1 | recombinase family protein | - |
| SMRU11_RS00705 () | 72940..73275 | - | 336 | Protein_76 | IS21 family transposase ISPve1 | Transposase |
| SMRU11_RS00710 () | 73272..74768 | - | 1497 | WP_146722434.1 | IS21 family transposase ISPve1 | Transposase |
| SMRU11_RS00715 () | 74883..75347 | - | 465 | Protein_78 | IS5 family transposase ISAra1 | Transposase |
| SMRU11_RS00720 () | 75571..76785 | + | 1215 | WP_012477246.1 | IS701 family transposase ISRm31 | Transposase |
| SMRU11_RS39985 () | 77002..77172 | + | 171 | WP_164839311.1 | hypothetical protein | - |
| SMRU11_RS00725 () | 77268..78041 | - | 774 | WP_088194115.1 | hypothetical protein | - |
| SMRU11_RS00730 () | 78051..81704 | - | 3654 | WP_088194121.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| SMRU11_RS00735 () | 81963..82400 | + | 438 | WP_088194116.1 | hypothetical protein | - |
| SMRU11_RS40570 () | 82404..83134 | + | 731 | Protein_84 | NYN domain-containing protein | - |
| SMRU11_RS00745 () | 83146..83448 | + | 303 | WP_013845947.1 | mobilization protein | - |
| SMRU11_RS00750 () | 83445..83807 | + | 363 | Protein_86 | type IV secretory system conjugative DNA transfer family protein | - |
| SMRU11_RS00755 () | 83809..84138 | - | 330 | Protein_87 | Protein VirD4 | VF |
| SMRU11_RS00760 () | 84247..84414 | + | 168 | Protein_88 | TraM recognition domain-containing protein | - |
| SMRU11_RS00765 () | 84444..84791 | + | 348 | Protein_89 | hypothetical protein | - |
| SMRU11_RS00770 () | 84917..85591 | + | 675 | WP_088194104.1 | C-factor | VF |
| SMRU11_RS00775 () | 85711..86028 | - | 318 | WP_088194118.1 | DNA-binding transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|