MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 56395 bp
Accession: NZ_CP021213 Location: 1..56395 Organism: Sinorhizobium meliloti RU11/001 Replicon: plasmid pSmeRU11a
Accession: NZ_CP021213 Location: 1..56395 Organism: Sinorhizobium meliloti RU11/001 Replicon: plasmid pSmeRU11a
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMRU11_RS00010 () | 495..2063 | + | 1569 | WP_049223445.1 | hypothetical protein | - |
| SMRU11_RS00015 () | 2205..2756 | + | 552 | WP_049223438.1 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| SMRU11_RS00020 () | 2753..2986 | + | 234 | Protein_3 | hypothetical protein | - |
| SMRU11_RS00025 () | 3102..3290 | + | 189 | Protein_4 | IS66 family transposase ISPpa5 | Transposase |
| SMRU11_RS00030 () | 3290..3631 | + | 342 | Protein_5 | IS110 family transposase ISSfr2 | Transposase |
| SMRU11_RS00035 () | 3811..4707 | - | 897 | WP_029728225.1 | ABC transporter permease | - |
| SMRU11_RS00040 () | 4717..5652 | - | 936 | WP_029728224.1 | ABC transporter permease | - |
| SMRU11_RS00045 () | 5652..6647 | - | 996 | WP_029728223.1 | Oligopeptide transport ATP-binding protein OppF | VF |
| SMRU11_RS00050 () | 6644..7681 | - | 1038 | WP_029728222.1 | Oligopeptide transport ATP-binding protein OppD | VF |
| SMRU11_RS00055 () | 7699..8550 | - | 852 | WP_088194092.1 | serine/threonine protein phosphatase | - |
| SMRU11_RS00060 () | 8605..10242 | - | 1638 | WP_029728220.1 | hypothetical protein | - |
| SMRU11_RS00065 () | 10415..11941 | - | 1527 | WP_029728219.1 | alkaline phosphatase family protein | - |
| SMRU11_RS00070 () | 11934..12770 | - | 837 | WP_029728218.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| SMRU11_RS00080 () | 14087..14722 | + | 636 | WP_029728217.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| SMRU11_RS00085 () | 14760..15539 | + | 780 | WP_049223432.1 | NTP transferase domain-containing protein | - |
| SMRU11_RS00090 () | 15536..16408 | + | 873 | WP_029728214.1 | GHMP kinase | - |
| SMRU11_RS00095 () | 16443..17357 | + | 915 | WP_029728213.1 | branched-chain-amino-acid transaminase | - |
| SMRU11_RS00100 () | 17347..18477 | + | 1131 | WP_049223430.1 | putative oxidoreductase YjmC | VF |
| SMRU11_RS00105 () | 18452..19687 | + | 1236 | WP_167389266.1 | MFS transporter | - |
| SMRU11_RS00110 () | 19665..21200 | + | 1536 | WP_050574248.1 | leucyl aminopeptidase family protein | - |
| SMRU11_RS38710 () | 21675..22553 | + | 879 | WP_146722536.1 | hypothetical protein | - |
| SMRU11_RS00115 () | 22682..23143 | - | 462 | Protein_22 | adenylyl-sulfate kinase | - |
| SMRU11_RS00120 () | 23223..23996 | - | 774 | WP_088194093.1 | hypothetical protein | - |
| SMRU11_RS00125 () | 24006..24407 | - | 402 | WP_088194103.1 | TraA | - |
| SMRU11_RS00130 () | 24990..26351 | - | 1362 | WP_012881183.1 | hypothetical protein | - |
| SMRU11_RS00135 () | 26348..27076 | - | 729 | WP_012881182.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| SMRU11_RS00140 () | 27117..30089 | + | 2973 | WP_012881181.1 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| SMRU11_RS00145 () | 30130..32838 | - | 2709 | Protein_28 | ATP-dependent RecD-like DNA helicase | Relaxase |
| SMRU11_RS40560 () | 33274..33453 | + | 180 | Protein_29 | OST-HTH/LOTUS domain-containing protein | - |
| SMRU11_RS00155 () | 33465..33767 | + | 303 | WP_088194095.1 | mobilization protein | - |
| SMRU11_RS00160 () | 33764..34772 | + | 1009 | Protein_31 | Conjugal transfer protein TraG | VF |
| SMRU11_RS00165 () | 34769..35116 | + | 348 | Protein_32 | hypothetical protein | - |
| SMRU11_RS00170 () | 35242..35916 | + | 675 | WP_088194104.1 | C-factor | VF |
| SMRU11_RS00175 () | 36036..36353 | - | 318 | WP_088194096.1 | DNA-binding transcriptional regulator | - |
| SMRU11_RS38715 () | 36337..36432 | - | 96 | WP_127525359.1 | hypothetical protein | - |
| SMRU11_RS00180 () | 36461..36790 | - | 330 | WP_013845950.1 | hypothetical protein | - |
| SMRU11_RS00185 () | 36787..37458 | - | 672 | WP_013845951.1 | Protein virC1 | VF |
| SMRU11_RS00190 () | 37741..38451 | - | 711 | WP_088194097.1 | replication protein A | - |
| SMRU11_RS00195 () | 38649..38861 | - | 213 | WP_029728305.1 | ribbon-helix-helix protein, CopG family | - |
| SMRU11_RS00200 () | 39229..41246 | - | 2018 | Protein_40 | ParB/RepB/Spo0J family partition protein | - |
| SMRU11_RS00205 () | 41316..41895 | - | 580 | Protein_41 | hypothetical protein | - |
| SMRU11_RS00210 () | 41892..42089 | - | 198 | WP_013845954.1 | hypothetical protein | - |
| SMRU11_RS00215 () | 42547..43083 | + | 537 | WP_029728303.1 | hypothetical protein | - |
| SMRU11_RS00220 () | 43310..43603 | - | 294 | WP_029728301.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SMRU11_RS00225 () | 43591..43863 | - | 273 | WP_013845962.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| SMRU11_RS00230 () | 44072..44301 | - | 230 | Protein_46 | hypothetical protein | - |
| SMRU11_RS00235 () | 44571..44906 | + | 336 | WP_080654722.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SMRU11_RS00240 () | 45050..45265 | - | 216 | WP_080654721.1 | hypothetical protein | - |
| SMRU11_RS00245 () | 45315..45620 | - | 306 | WP_029728298.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SMRU11_RS00250 () | 45617..45892 | - | 276 | WP_029728296.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| SMRU11_RS00255 () | 46180..46809 | + | 630 | WP_049223453.1 | ParA family protein | - |
| SMRU11_RS00260 () | 46809..47105 | + | 297 | WP_080654720.1 | hypothetical protein | - |
| SMRU11_RS00270 () | 47315..48493 | + | 1179 | Protein_53 | IS21 family transposase ISRm9 | Transposase |
| SMRU11_RS00275 () | 48514..49677 | - | 1164 | WP_088194098.1 | IS4 family transposase ISRm16 | Transposase |
| SMRU11_RS00280 () | 49801..50130 | + | 330 | Protein_55 | IS4 family transposase ISRm16 | Transposase |
| SMRU11_RS00285 () | 50127..50939 | + | 813 | WP_014529334.1 | IS21 family transposase ISRel5 | Transposase |
| SMRU11_RS00290 () | 51177..51494 | - | 318 | WP_088194100.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SMRU11_RS00295 () | 51499..51972 | - | 474 | WP_049223448.1 | hypothetical protein | - |
| SMRU11_RS00300 () | 52187..52897 | - | 711 | WP_088194097.1 | replication protein A | - |
| SMRU11_RS38725 () | 53095..53304 | - | 210 | WP_148707572.1 | ribbon-helix-helix protein, CopG family | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|