MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 45429 bp
Accession: NZ_CP021156 Location: 1..45429 Organism: Photobacterium damselae subsp. damselae strain KC-Na-1 Replicon: plasmid pPDD-Na-1-4
Accession: NZ_CP021156 Location: 1..45429 Organism: Photobacterium damselae subsp. damselae strain KC-Na-1 Replicon: plasmid pPDD-Na-1-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAY62_RS21160 () | 566..1417 | - | 852 | WP_086368772.1 | Type IV secretion system protein virB8 | VF |
| CAY62_RS21725 () | 1458..1601 | - | 144 | WP_157756358.1 | hypothetical protein | - |
| CAY62_RS21165 () | 1629..2621 | - | 993 | WP_086368773.1 | type IV secretion system protein | - |
| CAY62_RS21170 () | 2695..2892 | - | 198 | WP_086368774.1 | hypothetical protein | - |
| CAY62_RS21175 () | 2932..3555 | - | 624 | WP_086368775.1 | hypothetical protein | - |
| CAY62_RS21180 () | 3679..5547 | - | 1869 | WP_086368776.1 | Type IV secretion system protein virB4 | VF |
| CAY62_RS21185 () | 5610..6368 | - | 759 | WP_086366340.1 | IS21 family transposase ISKpn7 | Transposase |
| CAY62_RS21190 () | 6355..7398 | - | 1044 | WP_086366242.1 | IS21 family transposase ISAeme17 | Transposase |
| CAY62_RS21195 () | 7465..8058 | - | 594 | WP_086368777.1 | hypothetical protein | - |
| CAY62_RS21205 () | 8436..8771 | - | 336 | WP_086368779.1 | hypothetical protein | - |
| CAY62_RS21210 () | 8795..9394 | - | 600 | WP_086368780.1 | Type IV secretion system protein virB1 | VF |
| CAY62_RS21215 () | 9493..9641 | - | 149 | Protein_12 | IS5/IS1182 family transposase | - |
| CAY62_RS21220 () | 9908..10315 | + | 408 | WP_086368781.1 | helix-turn-helix domain-containing protein | - |
| CAY62_RS21730 () | 10308..10622 | - | 315 | WP_157756359.1 | hypothetical protein | - |
| CAY62_RS21225 () | 10549..11061 | - | 513 | WP_086368782.1 | hypothetical protein | - |
| CAY62_RS21235 () | 11709..12539 | + | 831 | WP_086368784.1 | hypothetical protein | - |
| CAY62_RS21240 () | 13289..14269 | - | 981 | WP_086368785.1 | Recombination-promoting nuclease RpnA | VF |
| CAY62_RS21245 () | 14546..15030 | + | 485 | Protein_18 | DUF3387 domain-containing protein | - |
| CAY62_RS21250 () | 15247..15618 | + | 372 | WP_086368786.1 | hypothetical protein | - |
| CAY62_RS21255 () | 16017..16175 | + | 159 | Protein_20 | restriction endonuclease subunit S | - |
| CAY62_RS21260 () | 16168..17295 | + | 1128 | WP_086368788.1 | DUF262 domain-containing protein | - |
| CAY62_RS21265 () | 17288..18397 | + | 1110 | WP_086368789.1 | DUF3696 domain-containing protein | - |
| CAY62_RS21270 () | 18394..19374 | + | 981 | WP_086368790.1 | hypothetical protein | - |
| CAY62_RS21805 () | 19764..19934 | - | 171 | WP_165001294.1 | IS3 family transposase ISSpu1 | Transposase |
| CAY62_RS21280 () | 21164..21559 | + | 396 | WP_086368791.1 | hypothetical protein | - |
| CAY62_RS21285 () | 21893..22782 | - | 890 | Protein_26 | IS630 family transposase ISVa15 | Transposase |
| CAY62_RS21290 () | 23020..23697 | + | 678 | WP_086368792.1 | CPBP family intramembrane metalloprotease | - |
| CAY62_RS21295 () | 23859..24038 | + | 180 | WP_086368793.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CAY62_RS21300 () | 24035..24310 | + | 276 | WP_086368794.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CAY62_RS21305 () | 24635..25123 | + | 489 | WP_086368795.1 | hypothetical protein | - |
| CAY62_RS21310 () | 25123..25341 | + | 219 | WP_086368796.1 | hypothetical protein | - |
| CAY62_RS21315 () | 25746..26474 | + | 729 | WP_086368797.1 | ParA family protein | - |
| CAY62_RS21320 () | 26509..26730 | + | 222 | WP_036766439.1 | hypothetical protein | - |
| CAY62_RS21325 () | 26848..27834 | + | 987 | WP_086368798.1 | hypothetical protein | - |
| CAY62_RS21330 () | 28407..29837 | + | 1431 | WP_086368799.1 | DUF3560 domain-containing protein | - |
| CAY62_RS21335 () | 30446..30685 | + | 240 | WP_086368800.1 | hypothetical protein | - |
| CAY62_RS21340 () | 30725..31156 | + | 432 | WP_086368801.1 | hypothetical protein | - |
| CAY62_RS21345 () | 31319..31696 | - | 378 | WP_086368802.1 | DNA-binding protein H-NS | VF |
| CAY62_RS21350 () | 31693..32289 | - | 597 | WP_086368803.1 | hypothetical protein | - |
| CAY62_RS21355 () | 32298..33035 | - | 738 | WP_086368804.1 | transcriptional regulator | - |
| CAY62_RS21360 () | 33038..33592 | - | 555 | WP_086368805.1 | hypothetical protein | - |
| CAY62_RS21365 () | 33890..34234 | + | 345 | WP_086368806.1 | hypothetical protein | Relaxase |
| CAY62_RS21735 () | 34228..37632 | + | 3405 | WP_157756360.1 | hypothetical protein | - |
| CAY62_RS21380 () | 37713..39896 | - | 2184 | WP_086368809.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| CAY62_RS21385 () | 40289..40687 | - | 399 | WP_086368813.1 | hypothetical protein | - |
| CAY62_RS21390 () | 40741..42525 | - | 1785 | WP_086368810.1 | type IV secretory system conjugative DNA transfer family protein | - |
| CAY62_RS21395 () | 42528..43541 | - | 1014 | WP_086368811.1 | Type IV secretion system protein VirB11 | VF |
| CAY62_RS21400 () | 43911..44933 | - | 1023 | WP_205849053.1 | Type IV secretion system protein virB10 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|