MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 54359 bp
Accession: NZ_CP021134 Location: 1..54359 Organism: Pseudomonas fragi strain NMC25 Replicon: plasmid unnamed2
Accession: NZ_CP021134 Location: 1..54359 Organism: Pseudomonas fragi strain NMC25 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B6D87_RS23415 () | 899..3871 | - | 2973 | WP_086799812.1 | Multifunctional conjugation protein TraI | Relaxase |
| B6D87_RS23420 () | 3882..5345 | - | 1464 | WP_086799849.1 | type IV secretion system DNA-binding domain-containing protein | - |
| B6D87_RS23425 () | 5435..5821 | - | 387 | WP_048377551.1 | hypothetical protein | - |
| B6D87_RS23430 () | 6251..6700 | + | 450 | WP_086799813.1 | TraD protein | - |
| B6D87_RS23435 () | 6697..7419 | + | 723 | WP_086799814.1 | plasmid stabilization protein | - |
| B6D87_RS23440 () | 7425..7814 | + | 390 | WP_086799815.1 | hypothetical protein | - |
| B6D87_RS23445 () | 7949..8740 | + | 792 | WP_086799816.1 | SprT-like domain-containing protein | - |
| B6D87_RS23450 () | 9441..9662 | - | 222 | WP_032901700.1 | hypothetical protein | - |
| B6D87_RS23455 () | 9714..12680 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| B6D87_RS23460 () | 12684..13244 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| B6D87_RS23470 () | 13554..15130 | + | 1577 | Protein_11 | Methyl-accepting chemotaxis protein McpQ | VF |
| B6D87_RS23475 () | 15370..15744 | - | 375 | WP_157665720.1 | hypothetical protein | - |
| B6D87_RS23480 () | 16027..16344 | - | 318 | WP_086799818.1 | hypothetical protein | - |
| B6D87_RS23485 () | 16398..16856 | - | 459 | WP_086799819.1 | hypothetical protein | - |
| B6D87_RS23490 () | 16912..17744 | - | 833 | Protein_15 | DUF945 domain-containing protein | - |
| B6D87_RS23495 () | 17923..18225 | + | 303 | WP_032901694.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| B6D87_RS23500 () | 18222..18515 | + | 294 | WP_032901693.1 | putative addiction module antidote protein | Antitoxin Detail |
| B6D87_RS23505 () | 19572..20492 | + | 921 | WP_086799820.1 | DUF2971 domain-containing protein | - |
| B6D87_RS23510 () | 20682..23804 | - | 3123 | WP_086799821.1 | type I restriction endonuclease subunit R | - |
| B6D87_RS23515 () | 23801..24853 | - | 1053 | WP_086799822.1 | DUF1016 family protein | - |
| B6D87_RS23520 () | 24850..26070 | - | 1221 | WP_086799823.1 | restriction endonuclease subunit S | - |
| B6D87_RS23525 () | 26060..27796 | - | 1737 | WP_086799824.1 | type I restriction-modification system subunit M | - |
| B6D87_RS23530 () | 27997..28371 | + | 375 | WP_086799851.1 | DUF2513 domain-containing protein | - |
| B6D87_RS23535 () | 28613..29164 | - | 552 | WP_086799825.1 | hypothetical protein | - |
| B6D87_RS23540 () | 29696..30319 | - | 624 | WP_086799826.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| B6D87_RS23545 () | 30542..30892 | - | 351 | WP_086799827.1 | ParR | - |
| B6D87_RS23550 () | 30889..31797 | - | 909 | WP_086799828.1 | ParB/RepB/Spo0J family partition protein | - |
| B6D87_RS23555 () | 31808..32575 | - | 768 | WP_086799829.1 | Sporulation initiation inhibitor protein Soj | VF |
| B6D87_RS23570 () | 33497..33967 | + | 471 | WP_086799832.1 | TrbC/VirB2 family protein | - |
| B6D87_RS23575 () | 33964..34263 | + | 300 | WP_081036823.1 | VirB3 family type IV secretion system protein | - |
| B6D87_RS23580 () | 34298..36934 | + | 2637 | WP_086799853.1 | Type IV secretion system protein virB4 | VF |
| B6D87_RS23585 () | 36934..37620 | + | 687 | WP_086799833.1 | hypothetical protein | - |
| B6D87_RS23590 () | 37650..37862 | + | 213 | WP_086799834.1 | hypothetical protein | - |
| B6D87_RS23595 () | 37855..38244 | + | 390 | WP_086799836.1 | hypothetical protein | - |
| B6D87_RS23600 () | 38232..39091 | + | 860 | Protein_35 | type IV secretion system protein | - |
| B6D87_RS23605 () | 39091..39756 | + | 666 | WP_086799838.1 | type IV secretion system protein | - |
| B6D87_RS23610 () | 39784..40563 | + | 780 | WP_086799840.1 | Type IV secretion system protein virB9 | VF |
| B6D87_RS23615 () | 40992..41824 | + | 833 | Protein_38 | Type IV secretion system protein virB10 | VF |
| B6D87_RS23620 () | 41834..42862 | + | 1029 | WP_086799843.1 | Type IV secretion system protein VirB11 | VF |
| B6D87_RS23625 () | 42846..43760 | + | 915 | WP_048377555.1 | Type IV secretion system protein virB1 | VF |
| B6D87_RS23630 () | 43790..44115 | + | 326 | Protein_41 | hypothetical protein | - |
| B6D87_RS23945 () | 44105..44473 | + | 369 | Protein_42 | endonuclease | - |
| B6D87_RS23635 () | 44528..45631 | - | 1104 | WP_009682427.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| B6D87_RS23640 () | 45633..46700 | - | 1068 | WP_019410169.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| B6D87_RS23645 () | 46887..47999 | - | 1113 | WP_019410170.1 | DUF2817 domain-containing protein | - |
| B6D87_RS23650 () | 48023..48790 | - | 768 | WP_009682424.1 | Histidine transport ATP-binding protein HisP | VF |
| B6D87_RS23655 () | 48818..49531 | - | 714 | WP_009682423.1 | ABC transporter permease | - |
| B6D87_RS23660 () | 49528..50217 | - | 690 | WP_009682422.1 | histidine ABC transporter permease HisQ | - |
| B6D87_RS23665 () | 50334..51104 | - | 771 | WP_009682421.1 | ABC transporter substrate-binding protein | - |
| B6D87_RS23670 () | 51486..52415 | + | 930 | WP_009682420.1 | LysR family transcriptional regulator | - |
| B6D87_RS23675 () | 52422..53037 | - | 616 | Protein_51 | LysR family transcriptional regulator | - |
| B6D87_RS23680 () | 53237..53455 | + | 219 | WP_019410174.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| B6D87_RS23410 () | 53948..54359 | + | 412 | WP_157665719.1 | IS3 family transposase ISPsy24 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|