MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 103036 bp
Accession: NZ_CP021108 Location: 4435873..4538908 Organism: Bordetella genomosp. 8 strain AU19157 Replicon: chromosome
Accession: NZ_CP021108 Location: 4435873..4538908 Organism: Bordetella genomosp. 8 strain AU19157 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAL12_RS20130 () | 4432494..4434581 | - | 2088 | WP_198298276.1 | hydantoinase/oxoprolinase family protein | - |
| CAL12_RS20135 () | 4434708..4435739 | + | 1032 | WP_086066247.1 | LysR family transcriptional regulator | - |
| CAL12_RS20145 () | 4436045..4437073 | + | 1029 | WP_086066248.1 | hypothetical protein ; Integrase | Integrase |
| CAL12_RS20150 () | 4437559..4437906 | + | 348 | WP_086066249.1 | hypothetical protein | - |
| CAL12_RS20155 () | 4437943..4438881 | + | 939 | WP_086066250.1 | hypothetical protein | VF |
| CAL12_RS20160 () | 4438906..4440618 | + | 1713 | WP_086066251.1 | hypothetical protein | - |
| CAL12_RS20165 () | 4440687..4441970 | + | 1284 | WP_157793042.1 | hypothetical protein | - |
| CAL12_RS20170 () | 4441954..4442502 | + | 549 | WP_086066253.1 | hypothetical protein | - |
| CAL12_RS20175 () | 4442499..4444292 | + | 1794 | WP_086066254.1 | Flp pilus assembly complex ATPase component TadA | - |
| CAL12_RS28125 () | 4444289..4445389 | + | 1101 | WP_157793043.1 | hypothetical protein | - |
| CAL12_RS28130 () | 4445479..4446108 | + | 630 | WP_157793044.1 | prepilin-type cleavage/methylation domain-containing protein | - |
| CAL12_RS20185 () | 4446254..4447471 | + | 1218 | WP_086066255.1 | hypothetical protein | - |
| CAL12_RS20190 () | 4447584..4448369 | + | 786 | WP_157793045.1 | hypothetical protein | - |
| CAL12_RS20195 () | 4448409..4448996 | + | 588 | WP_086068010.1 | conjugal transfer protein TrbM | - |
| CAL12_RS20200 () | 4449001..4449705 | + | 705 | WP_086066257.1 | Type IV secretion system protein virB1 | VF |
| CAL12_RS20205 () | 4449823..4450116 | + | 294 | WP_157793046.1 | hypothetical protein | VF |
| CAL12_RS20210 () | 4450113..4450505 | + | 393 | WP_086066258.1 | Type IV secretion system protein virB3 | VF |
| CAL12_RS20215 () | 4450502..4452961 | + | 2460 | WP_198298277.1 | Type IV secretion system protein virB4 | VF |
| CAL12_RS20220 () | 4452963..4453712 | + | 750 | WP_086066260.1 | Type IV secretion system protein virB5 | VF |
| CAL12_RS20225 () | 4453712..4454602 | + | 891 | WP_086066261.1 | hypothetical protein | VF |
| CAL12_RS20230 () | 4455530..4457947 | + | 2418 | WP_086066262.1 | restriction endonuclease | - |
| CAL12_RS20235 () | 4458368..4459048 | + | 681 | WP_086066263.1 | Type IV secretion system protein virB8 | VF |
| CAL12_RS20240 () | 4459054..4459629 | + | 576 | WP_086066264.1 | hypothetical protein | - |
| CAL12_RS20245 () | 4459626..4460492 | + | 867 | WP_086066265.1 | Type IV secretion system protein virB9 | VF |
| CAL12_RS20250 () | 4460489..4461652 | + | 1164 | WP_086066266.1 | Type IV secretion system protein virB10 | VF |
| CAL12_RS20255 () | 4461715..4462743 | + | 1029 | WP_086066267.1 | Type IV secretion system protein VirB11 | VF |
| CAL12_RS20260 () | 4462764..4463036 | + | 273 | WP_086066268.1 | hypothetical protein | - |
| CAL12_RS20265 () | 4463106..4464152 | + | 1047 | WP_086066269.1 | helix-turn-helix domain-containing protein | - |
| CAL12_RS20270 () | 4464880..4465332 | + | 453 | WP_086066270.1 | hypothetical protein | - |
| CAL12_RS20275 () | 4465345..4466052 | + | 708 | WP_086066271.1 | plasmid stability protein StbB | - |
| CAL12_RS20280 () | 4466062..4466451 | + | 390 | WP_086066272.1 | hypothetical protein | - |
| CAL12_RS20285 () | 4466671..4467063 | - | 393 | WP_086066273.1 | hypothetical protein | - |
| CAL12_RS20290 () | 4467184..4468887 | + | 1704 | WP_198298278.1 | type IV secretion system DNA-binding domain-containing protein | - |
| CAL12_RS20295 () | 4468909..4471893 | + | 2985 | WP_086066274.1 | relaxase domain-containing protein | - |
| CAL12_RS20300 () | 4471992..4472888 | - | 897 | WP_086066275.1 | hypothetical protein | - |
| CAL12_RS20305 () | 4472919..4474121 | - | 1203 | WP_198298279.1 | hypothetical protein | - |
| CAL12_RS20310 () | 4474099..4476771 | - | 2673 | WP_086066277.1 | ATP-binding protein | - |
| CAL12_RS20315 () | 4477804..4478100 | - | 297 | WP_066671150.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CAL12_RS20320 () | 4478103..4478414 | - | 312 | WP_066671154.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CAL12_RS20325 () | 4478550..4480520 | - | 1971 | WP_086066278.1 | ParB N-terminal domain-containing protein | - |
| CAL12_RS28325 () | 4480550..4480699 | - | 150 | WP_198298280.1 | hypothetical protein | - |
| CAL12_RS20330 () | 4480798..4481214 | - | 417 | WP_086066279.1 | hypothetical protein | - |
| CAL12_RS20335 () | 4481235..4481648 | - | 414 | WP_086066280.1 | single-stranded DNA-binding protein | - |
| CAL12_RS20340 () | 4482653..4482907 | - | 255 | WP_086066281.1 | hypothetical protein | - |
| CAL12_RS20345 () | 4482904..4483551 | - | 648 | WP_086066282.1 | DNA methylase | - |
| CAL12_RS20350 () | 4483854..4484735 | - | 882 | WP_086066283.1 | type I restriction-modification system subunit M | - |
| CAL12_RS20355 () | 4485044..4485456 | - | 413 | Protein_3996 | antirestriction protein | - |
| CAL12_RS20360 () | 4485659..4486015 | - | 357 | WP_082988331.1 | hypothetical protein | - |
| CAL12_RS20370 () | 4487167..4488447 | - | 1281 | WP_086066284.1 | cation:proton antiporter | - |
| CAL12_RS20375 () | 4488669..4489085 | - | 417 | WP_198298281.1 | PRC-barrel domain-containing protein | - |
| CAL12_RS20380 () | 4489150..4489605 | - | 456 | WP_082988332.1 | DUF2934 domain-containing protein | - |
| CAL12_RS20390 () | 4490654..4491205 | - | 552 | WP_086066285.1 | Bacteriophytochrome | VF |
| CAL12_RS20395 () | 4491207..4491797 | - | 591 | WP_086066286.1 | RsbRD N-terminal domain-containing protein | - |
| CAL12_RS20405 () | 4492565..4492768 | - | 204 | WP_066672932.1 | cold-shock protein | - |
| CAL12_RS20410 () | 4492920..4493279 | - | 360 | WP_086066288.1 | response regulator | - |
| CAL12_RS20415 () | 4494027..4495889 | + | 1863 | WP_157793048.1 | AI-2E family transporter | - |
| CAL12_RS20420 () | 4495884..4504376 | - | 8493 | WP_086066290.1 | Cyclic beta-(1,2)-glucan synthase NdvB | VF |
| CAL12_RS20430 () | 4505091..4505288 | - | 198 | WP_157793049.1 | integrase core domain-containing protein | - |
| CAL12_RS20435 () | 4505638..4506009 | - | 372 | WP_086066292.1 | hypothetical protein | - |
| CAL12_RS20440 () | 4506485..4506685 | - | 201 | WP_086066293.1 | cold-shock protein | - |
| CAL12_RS20445 () | 4506803..4507402 | - | 600 | WP_086066294.1 | TetR/AcrR family transcriptional regulator | - |
| CAL12_RS20450 () | 4507559..4508830 | - | 1272 | WP_086068013.1 | MFS transporter | - |
| CAL12_RS20455 () | 4508915..4509307 | - | 393 | WP_086066295.1 | ester cyclase | - |
| CAL12_RS20460 () | 4509525..4510004 | - | 480 | WP_086066296.1 | DUF4437 domain-containing protein | - |
| CAL12_RS20465 () | 4510052..4510843 | - | 792 | WP_086066297.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| CAL12_RS20470 () | 4510998..4511699 | - | 702 | WP_157793050.1 | cysteine hydrolase | - |
| CAL12_RS20475 () | 4512307..4512975 | - | 669 | WP_086066299.1 | antibiotic biosynthesis monooxygenase | - |
| CAL12_RS20480 () | 4512990..4513382 | - | 393 | WP_086066300.1 | RidA family protein | - |
| CAL12_RS20485 () | 4513677..4514423 | + | 747 | WP_086066301.1 | NAD-dependent glycerol dehydrogenase | VF |
| CAL12_RS20490 () | 4514532..4516064 | + | 1533 | WP_086066302.1 | MFS transporter | - |
| CAL12_RS20495 () | 4516241..4516828 | + | 588 | WP_198298282.1 | TetR/AcrR family transcriptional regulator | - |
| CAL12_RS20500 () | 4516865..4517122 | - | 258 | WP_086066304.1 | DUF1272 domain-containing protein | - |
| CAL12_RS20505 () | 4517194..4518324 | - | 1131 | WP_086066305.1 | alkene reductase | - |
| CAL12_RS20510 () | 4518807..4519721 | + | 915 | WP_157793051.1 | LysR family transcriptional regulator | - |
| CAL12_RS20515 () | 4519918..4520886 | + | 969 | WP_086066307.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| CAL12_RS20520 () | 4520890..4522968 | + | 2079 | WP_086066308.1 | acetate--CoA ligase family protein | - |
| CAL12_RS20525 () | 4522968..4523765 | + | 798 | WP_086068014.1 | enoyl-CoA hydratase/isomerase family protein | - |
| CAL12_RS20530 () | 4523821..4524342 | + | 522 | WP_086068015.1 | Protein YrdA | VF |
| CAL12_RS28135 () | 4524483..4525151 | - | 669 | WP_157793052.1 | hypothetical protein | - |
| CAL12_RS20540 () | 4525283..4526083 | - | 801 | WP_086066310.1 | isocitrate lyase/phosphoenolpyruvate mutase family protein | - |
| CAL12_RS20545 () | 4526177..4527646 | - | 1470 | WP_086066311.1 | Outer membrane protein OprM | VF |
| CAL12_RS20550 () | 4527643..4530804 | - | 3162 | WP_086066312.1 | Efflux pump membrane transporter BepE | VF |
| CAL12_RS20555 () | 4530819..4532054 | - | 1236 | WP_086066313.1 | Efflux pump periplasmic linker BepF | VF |
| CAL12_RS20560 () | 4532437..4533093 | + | 657 | WP_086066314.1 | TetR/AcrR family transcriptional regulator | - |
| CAL12_RS20565 () | 4533090..4533611 | + | 522 | WP_086066315.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| CAL12_RS20570 () | 4533755..4534867 | - | 1113 | WP_086066316.1 | ParB/RepB/Spo0J family partition protein | - |
| CAL12_RS20575 () | 4534864..4535613 | - | 750 | WP_086066317.1 | ParA family protein | - |
| CAL12_RS20580 () | 4536048..4536473 | + | 426 | WP_086066318.1 | hypothetical protein | - |
| CAL12_RS20585 () | 4537266..4538549 | + | 1284 | WP_086068016.1 | DUF1173 family protein | - |
| CAL12_RS20590 () | 4538602..4538874 | + | 273 | WP_086066319.1 | helix-turn-helix domain-containing protein | - |
| CAL12_RS20595 () | 4538986..4539792 | - | 807 | WP_086066320.1 | aspartate dehydrogenase | - |
| CAL12_RS20600 () | 4539883..4540890 | - | 1008 | WP_086066321.1 | LysR family transcriptional regulator | - |
| CAL12_RS20605 () | 4540926..4541912 | - | 987 | WP_086066322.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| CAL12_RS20615 () | 4542242..4543129 | + | 888 | WP_086066324.1 | hypothetical protein | - |
| CAL12_RS28140 () | 4543168..4543530 | + | 363 | WP_157793053.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|