MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 152411 bp
Accession: NZ_CP020925 Location: 3553513..3705923 Organism: Sphingobium yanoikuyae strain SHJ Replicon: chromosome
Accession: NZ_CP020925 Location: 3553513..3705923 Organism: Sphingobium yanoikuyae strain SHJ Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV87_RS16795 () | 3548782..3550173 | - | 1392 | WP_048937917.1 | DEAD/DEAH box helicase | - |
| BV87_RS16800 () | 3550308..3550739 | - | 432 | WP_004207401.1 | hypothetical protein | - |
| BV87_RS16805 () | 3550817..3552271 | + | 1455 | WP_048937918.1 | FAD-binding oxidoreductase | - |
| BV87_RS16810 () | 3552388..3553176 | + | 789 | WP_004207403.1 | SapC family protein | - |
| BV87_RS16825 () | 3554355..3554861 | - | 507 | WP_080727256.1 | lytic transglycosylase domain-containing protein | - |
| BV87_RS16830 () | 3554878..3557811 | - | 2934 | WP_048937919.1 | relaxase domain-containing protein | - |
| BV87_RS16835 () | 3557808..3559811 | - | 2004 | WP_017502400.1 | type IV secretion system DNA-binding domain-containing protein | - |
| BV87_RS16840 () | 3559808..3560110 | - | 303 | WP_026109438.1 | hypothetical protein | - |
| BV87_RS16845 () | 3560579..3560794 | - | 216 | WP_048937920.1 | hypothetical protein | - |
| BV87_RS16850 () | 3561110..3561421 | - | 312 | WP_136187453.1 | hypothetical protein | - |
| BV87_RS16855 () | 3561488..3561913 | - | 426 | WP_037520612.1 | DUF2958 domain-containing protein | - |
| BV87_RS16860 () | 3561910..3562854 | - | 945 | WP_048937922.1 | DUF1738 domain-containing protein | - |
| BV87_RS16865 () | 3563322..3563540 | - | 219 | WP_037520615.1 | sigma-70 region 4 domain-containing protein | - |
| BV87_RS16870 () | 3563600..3565474 | - | 1875 | WP_080993591.1 | ParB/RepB/Spo0J family partition protein | - |
| BV87_RS16875 () | 3565952..3566980 | + | 1029 | WP_159078606.1 | toll/interleukin-1 receptor domain-containing protein | - |
| BV87_RS16885 () | 3567398..3568201 | + | 804 | WP_037520620.1 | fructosamine kinase family protein | - |
| BV87_RS16890 () | 3568526..3569317 | + | 792 | WP_037520622.1 | hypothetical protein | - |
| BV87_RS16895 () | 3569362..3569580 | - | 219 | WP_037520624.1 | hypothetical protein | - |
| BV87_RS16900 () | 3569753..3570832 | + | 1080 | WP_048937924.1 | endonuclease/exonuclease/phosphatase family protein | - |
| BV87_RS16905 () | 3571036..3571302 | + | 267 | WP_037520626.1 | hypothetical protein | - |
| BV87_RS16910 () | 3571379..3571654 | + | 276 | WP_037520628.1 | HU family DNA-binding protein | - |
| BV87_RS16915 () | 3572251..3573009 | + | 759 | WP_037520629.1 | LuxR family transcriptional regulator | - |
| BV87_RS16920 () | 3573148..3573762 | + | 615 | WP_048937925.1 | Acyl-homoserine-lactone synthase | VF |
| BV87_RS16925 () | 3573774..3574673 | + | 900 | WP_037520632.1 | phytanoyl-CoA dioxygenase family protein | - |
| BV87_RS16930 () | 3574716..3575138 | + | 423 | WP_048937926.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| BV87_RS16935 () | 3575170..3575394 | + | 225 | WP_196221871.1 | CopG family transcriptional regulator | Antitoxin Detail |
| BV87_RS16940 () | 3575391..3575828 | + | 438 | WP_037520637.1 | PIN domain-containing protein | Toxin Detail |
| BV87_RS16945 () | 3575828..3576748 | + | 921 | WP_037520638.1 | HEPN domain-containing protein | - |
| BV87_RS16950 () | 3577252..3577800 | - | 549 | WP_017500760.1 | hypothetical protein | - |
| BV87_RS16955 () | 3578107..3578697 | + | 591 | WP_048937927.1 | TerD family protein | - |
| BV87_RS16960 () | 3578749..3579972 | + | 1224 | WP_048937928.1 | TerD family protein | - |
| BV87_RS16965 () | 3580045..3581211 | + | 1167 | WP_080993592.1 | DUF475 domain-containing protein | - |
| BV87_RS16970 () | 3581272..3582408 | + | 1137 | WP_048937929.1 | TerD family protein | - |
| BV87_RS16975 () | 3582485..3583057 | + | 573 | WP_048937930.1 | TerD family protein | - |
| BV87_RS16980 () | 3583134..3583715 | + | 582 | WP_048937931.1 | TerD family protein | - |
| BV87_RS16985 () | 3583815..3585128 | + | 1314 | WP_159078607.1 | VWA domain-containing protein | - |
| BV87_RS16990 () | 3585177..3586175 | + | 999 | WP_017500768.1 | ATP-grasp domain-containing protein | - |
| BV87_RS16995 () | 3586191..3587333 | + | 1143 | WP_199909664.1 | serine protease | - |
| BV87_RS17000 () | 3587343..3588410 | + | 1068 | WP_107917604.1 | DUF4236 domain-containing protein | - |
| BV87_RS17005 () | 3588473..3589624 | + | 1152 | WP_048937934.1 | phosphoribosyltransferase domain-containing protein | - |
| BV87_RS17010 () | 3589627..3590373 | + | 747 | WP_048937935.1 | sucrose-6-phosphate hydrolase | - |
| BV87_RS17015 () | 3590373..3591476 | + | 1104 | WP_048937936.1 | cysteine protease StiP family protein | - |
| BV87_RS17020 () | 3591473..3592375 | + | 903 | WP_048937937.1 | HpcH/HpaI aldolase/citrate lyase family protein | - |
| BV87_RS17025 () | 3592437..3593606 | + | 1170 | WP_017500775.1 | toxic anion resistance protein | - |
| BV87_RS27740 () | 3593603..3594274 | + | 672 | WP_199909665.1 | hypothetical protein | - |
| BV87_RS17040 () | 3594732..3595703 | + | 972 | WP_048937938.1 | Transcriptional regulatory protein TdiR | VF |
| BV87_RS17045 () | 3595866..3596387 | + | 522 | WP_017500779.1 | hypothetical protein | - |
| BV87_RS17050 () | 3596439..3597974 | + | 1536 | WP_017500780.1 | hypothetical protein | - |
| BV87_RS17055 () | 3598148..3600025 | + | 1878 | WP_038292644.1 | hypothetical protein | - |
| BV87_RS17060 () | 3600027..3600704 | + | 678 | WP_199909666.1 | hypothetical protein | - |
| BV87_RS17065 () | 3601012..3601269 | + | 258 | WP_048937974.1 | hypothetical protein | - |
| BV87_RS17070 () | 3601299..3601607 | + | 309 | WP_159078608.1 | hypothetical protein | - |
| BV87_RS17075 () | 3601600..3603063 | + | 1464 | WP_048937939.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| BV87_RS17080 () | 3603060..3604229 | + | 1170 | WP_048937940.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| BV87_RS27745 () | 3604281..3604694 | - | 414 | WP_199909667.1 | hypothetical protein | - |
| BV87_RS17090 () | 3605217..3607412 | + | 2196 | WP_048937941.1 | hypothetical protein | - |
| BV87_RS17095 () | 3607632..3609395 | + | 1764 | WP_159078609.1 | hypothetical protein | - |
| BV87_RS17100 () | 3610995..3611144 | + | 150 | WP_107917690.1 | peptidase inhibitor family I36 protein | - |
| BV87_RS17105 () | 3611907..3615170 | - | 3264 | WP_107917606.1 | error-prone DNA polymerase | - |
| BV87_RS17110 () | 3615170..3617002 | - | 1833 | WP_080993594.1 | DNA polymerase Y family protein | - |
| BV87_RS17115 () | 3616920..3617696 | - | 777 | WP_199909714.1 | protein ImuA | - |
| BV87_RS17120 () | 3617797..3618219 | - | 423 | WP_037520652.1 | DUF1810 domain-containing protein | - |
| BV87_RS17125 () | 3618219..3618836 | - | 618 | WP_048937946.1 | SOS response-associated peptidase | - |
| BV87_RS17130 () | 3618991..3619416 | + | 426 | WP_048937977.1 | SOS response-associated peptidase family protein | - |
| BV87_RS17140 () | 3619840..3619944 | - | 105 | WP_080572849.1 | DUF2474 family protein | - |
| BV87_RS17145 () | 3619944..3620942 | - | 999 | WP_048937947.1 | cytochrome d ubiquinol oxidase subunit II | - |
| BV87_RS17150 () | 3620939..3622333 | - | 1395 | WP_048937948.1 | cytochrome ubiquinol oxidase subunit I | - |
| BV87_RS17155 () | 3622346..3623131 | - | 786 | WP_048937949.1 | sulfite exporter TauE/SafE family protein | - |
| BV87_RS17160 () | 3623135..3624718 | - | 1584 | WP_048937950.1 | TIGR01244 family phosphatase | - |
| BV87_RS17165 () | 3624756..3625166 | - | 411 | WP_010338385.1 | hypothetical protein | - |
| BV87_RS17170 () | 3625163..3625369 | - | 207 | WP_010338386.1 | DUF2892 domain-containing protein | - |
| BV87_RS17175 () | 3625386..3625835 | - | 450 | WP_048937951.1 | YeeE/YedE family protein | - |
| BV87_RS17180 () | 3625832..3626749 | - | 918 | WP_048937952.1 | MBL fold metallo-hydrolase | - |
| BV87_RS17185 () | 3626837..3627460 | + | 624 | WP_048937953.1 | peroxiredoxin | - |
| BV87_RS17190 () | 3627457..3627849 | + | 393 | WP_010338391.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| BV87_RS17195 () | 3627970..3628662 | - | 693 | WP_048937954.1 | VIT family protein | - |
| BV87_RS17200 () | 3628868..3629548 | + | 681 | WP_048937955.1 | Transcriptional regulatory protein tctD | VF |
| BV87_RS17205 () | 3629542..3630555 | + | 1014 | WP_107917607.1 | Sensor protein QseC | VF |
| BV87_RS17210 () | 3630604..3631713 | + | 1110 | WP_048937956.1 | efflux RND transporter periplasmic adaptor subunit | - |
| BV87_RS17215 () | 3631723..3634812 | + | 3090 | WP_048937957.1 | efflux RND transporter permease subunit | - |
| BV87_RS17220 () | 3634805..3635104 | + | 300 | WP_010338397.1 | DUF3240 family protein | - |
| BV87_RS17225 () | 3635101..3636366 | + | 1266 | WP_048937958.1 | TolC family protein | - |
| BV87_RS17230 () | 3636432..3637097 | + | 666 | WP_048937959.1 | cytochrome b/b6 domain-containing protein | - |
| BV87_RS17235 () | 3637168..3637908 | - | 741 | WP_048937960.1 | arsenical resistance protein ArsH | - |
| BV87_RS17240 () | 3637905..3638339 | - | 435 | WP_048937961.1 | GNAT family N-acetyltransferase | - |
| BV87_RS17245 () | 3638336..3639397 | - | 1062 | WP_048937962.1 | ACR3 family arsenite efflux transporter | - |
| BV87_RS17250 () | 3639394..3639825 | - | 432 | WP_048937963.1 | arsenate reductase (glutaredoxin) | - |
| BV87_RS17255 () | 3639834..3640166 | - | 333 | WP_048937964.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| BV87_RS27385 () | 3640187..3640549 | + | 363 | WP_159078610.1 | hypothetical protein | - |
| BV87_RS17260 () | 3640657..3641274 | + | 618 | WP_053094334.1 | sigma-70 family RNA polymerase sigma factor | - |
| BV87_RS17265 () | 3641276..3642322 | + | 1047 | WP_048937965.1 | FecR domain-containing protein | - |
| BV87_RS17270 () | 3642389..3644968 | + | 2580 | WP_053094335.1 | TonB-dependent receptor | - |
| BV87_RS17275 () | 3644970..3647117 | + | 2148 | WP_048937966.1 | Atxe2 family lasso peptide isopeptidase | - |
| BV87_RS17280 () | 3647056..3648777 | - | 1722 | WP_048937967.1 | asparagine synthetase B family protein | - |
| BV87_RS17285 () | 3648774..3649439 | - | 666 | WP_080727251.1 | lasso peptide biosynthesis B2 protein | - |
| BV87_RS17290 () | 3649505..3649636 | - | 132 | WP_159078611.1 | benenodin family lasso peptide | - |
| BV87_RS17295 () | 3649776..3650447 | - | 672 | WP_080993597.1 | GntR family transcriptional regulator | - |
| BV87_RS17300 () | 3650526..3651737 | - | 1212 | WP_107917519.1 | IS256 family transposase ISSpma2 | Transposase |
| BV87_RS17305 () | 3651856..3652308 | - | 453 | WP_107917609.1 | helix-turn-helix domain-containing protein | - |
| BV87_RS17310 () | 3652466..3652879 | - | 414 | WP_136187472.1 | hypothetical protein | - |
| BV87_RS17315 () | 3653240..3653521 | + | 282 | WP_048938646.1 | hypothetical protein | - |
| BV87_RS17320 () | 3653518..3654306 | + | 789 | WP_048938645.1 | DsbC family protein | - |
| BV87_RS17325 () | 3654479..3654808 | + | 330 | WP_048938644.1 | hypothetical protein | - |
| BV87_RS17330 () | 3654926..3655192 | + | 267 | WP_026109091.1 | membrane protein | - |
| BV87_RS17335 () | 3655200..3655835 | + | 636 | WP_048938643.1 | conjugal transfer protein | - |
| BV87_RS17340 () | 3655819..3656598 | + | 780 | WP_048938642.1 | type-F conjugative transfer system secretin TraK | - |
| BV87_RS17345 () | 3656595..3657944 | + | 1350 | WP_168708730.1 | TraB/VirB10 family protein | - |
| BV87_RS17350 () | 3657977..3658597 | + | 621 | WP_048938641.1 | TraV family lipoprotein | - |
| BV87_RS17355 () | 3658594..3661122 | + | 2529 | WP_048938640.1 | TraC family protein | - |
| BV87_RS17360 () | 3661122..3661466 | + | 345 | WP_048938657.1 | hypothetical protein | - |
| BV87_RS17365 () | 3661463..3661702 | + | 240 | WP_048938656.1 | hypothetical protein | - |
| BV87_RS17370 () | 3661692..3662321 | + | 630 | WP_048938639.1 | conjugal transfer protein TraW | - |
| BV87_RS17375 () | 3662318..3663331 | + | 1014 | WP_048938638.1 | TraU family protein | - |
| BV87_RS17380 () | 3663693..3665621 | + | 1929 | WP_048938637.1 | hypothetical protein | - |
| BV87_RS17385 () | 3665618..3666706 | + | 1089 | WP_048938636.1 | conjugal transfer protein TraN | - |
| BV87_RS17390 () | 3666714..3667541 | + | 828 | WP_199909668.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| BV87_RS17395 () | 3667513..3668112 | + | 600 | WP_048938634.1 | S26 family signal peptidase | - |
| BV87_RS17400 () | 3668154..3668963 | + | 810 | WP_048938655.1 | conjugal transfer protein TraF | - |
| BV87_RS17405 () | 3668975..3669550 | + | 576 | WP_048938633.1 | hypothetical protein | - |
| BV87_RS17410 () | 3669700..3671064 | + | 1365 | WP_199909715.1 | conjugal transfer protein TraH | - |
| BV87_RS17415 () | 3671080..3674808 | + | 3729 | WP_048938631.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| BV87_RS17420 () | 3674783..3675193 | - | 411 | WP_080993653.1 | hypothetical protein | - |
| BV87_RS17425 () | 3675776..3676774 | - | 999 | WP_048938654.1 | isopenicillin N synthase family oxygenase | - |
| BV87_RS17430 () | 3676911..3677864 | + | 954 | WP_017502979.1 | LysR family transcriptional regulator | - |
| BV87_RS17435 () | 3677874..3678407 | + | 534 | WP_017502978.1 | hypothetical protein | - |
| BV87_RS17440 () | 3678432..3679418 | - | 987 | WP_017502977.1 | bile acid:sodium symporter | - |
| BV87_RS17445 () | 3679415..3679795 | - | 381 | WP_048938630.1 | oxalurate catabolism protein HpxZ | - |
| BV87_RS17450 () | 3679792..3681129 | - | 1338 | WP_017502785.1 | Biuret hydrolase | VF |
| BV87_RS17455 () | 3681126..3681305 | - | 180 | WP_017502786.1 | DUF4089 domain-containing protein | - |
| BV87_RS17460 () | 3681312..3681641 | - | 330 | WP_017502787.1 | hydroxyisourate hydrolase | - |
| BV87_RS17465 () | 3681638..3683059 | - | 1422 | WP_017502788.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| BV87_RS17470 () | 3683056..3683529 | - | 474 | WP_017502789.1 | 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | - |
| BV87_RS17475 () | 3683522..3684409 | - | 888 | WP_038293028.1 | allantoinase PuuE | - |
| BV87_RS17480 () | 3684406..3685602 | - | 1197 | WP_080993657.1 | alanine--glyoxylate aminotransferase family protein | - |
| BV87_RS17485 () | 3685640..3686896 | - | 1257 | WP_017502792.1 | N-carbamoyl-L-amino acid hydrolase | VF |
| BV87_RS17490 () | 3686890..3688467 | - | 1578 | WP_199909716.1 | gamma-glutamyltransferase family protein | - |
| BV87_RS17495 () | 3688668..3689747 | - | 1080 | WP_017502794.1 | Rieske 2Fe-2S domain-containing protein | - |
| BV87_RS17500 () | 3689744..3690136 | - | 393 | WP_017502795.1 | VOC family protein | - |
| BV87_RS17505 () | 3690148..3691131 | - | 984 | WP_017502796.1 | isopenicillin N synthase family oxygenase | - |
| BV87_RS17510 () | 3691133..3692161 | - | 1029 | WP_026109529.1 | isopenicillin N synthase family oxygenase | - |
| BV87_RS17515 () | 3692163..3693557 | - | 1395 | WP_107917611.1 | purine permease | - |
| BV87_RS17520 () | 3693547..3695850 | - | 2304 | WP_048938629.1 | TonB-dependent receptor | - |
| BV87_RS17525 () | 3696014..3696925 | + | 912 | WP_048938628.1 | LysR family transcriptional regulator | - |
| BV87_RS17530 () | 3697110..3697256 | - | 147 | WP_157228514.1 | TetR family transcriptional regulator | - |
| BV87_RS17535 () | 3697370..3698590 | - | 1221 | WP_017501556.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| BV87_RS17540 () | 3698587..3699555 | - | 969 | WP_048938627.1 | carbon-nitrogen hydrolase family protein | - |
| BV87_RS17545 () | 3699564..3700166 | - | 603 | WP_080993651.1 | GNAT family N-acetyltransferase | - |
| BV87_RS17550 () | 3700163..3700564 | - | 402 | WP_048938652.1 | nuclear transport factor 2 family protein | - |
| BV87_RS17555 () | 3700570..3700881 | - | 312 | WP_048938626.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| BV87_RS17560 () | 3700881..3701729 | - | 849 | WP_026109246.1 | S-formylglutathione hydrolase | - |
| BV87_RS17565 () | 3701739..3702140 | - | 402 | WP_199909717.1 | VOC family protein | - |
| BV87_RS17570 () | 3702166..3703278 | - | 1113 | WP_017501549.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| BV87_RS17575 () | 3703486..3704391 | + | 906 | WP_017501548.1 | LysR family transcriptional regulator | - |
| BV87_RS17580 () | 3704455..3705747 | - | 1293 | WP_017501547.1 | hypothetical protein ; Integrase | Integrase |
| BV87_RS17585 () | 3705996..3706466 | - | 471 | WP_048938651.1 | nuclear transport factor 2 family protein | - |
| BV87_RS17590 () | 3706466..3707095 | - | 630 | WP_048938624.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| BV87_RS17595 () | 3707157..3708131 | - | 975 | WP_048938650.1 | alpha/beta hydrolase | - |
| BV87_RS17600 () | 3708256..3709209 | - | 954 | WP_170978384.1 | LysR family transcriptional regulator | - |
| BV87_RS17605 () | 3709378..3710388 | + | 1011 | WP_080993650.1 | L,D-transpeptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|