MGE detailed information
MGE type: Conjugative plasmid MGE length: 35273 bp
Accession: NZ_CP020871 Location: 1..35273 Organism: Xylella fastidiosa subsp. pauca strain De Donno Replicon: plasmid pXF-De_Donno
Accession: NZ_CP020871 Location: 1..35273 Organism: Xylella fastidiosa subsp. pauca strain De Donno Replicon: plasmid pXF-De_Donno
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9J09_RS11910 () | 563..883 | + | 321 | WP_046417474.1 | hypothetical protein | - |
| B9J09_RS11915 () | 1079..1384 | + | 306 | WP_046417543.1 | transcriptional regulator KorA | - |
| B9J09_RS11920 () | 1381..2145 | + | 765 | WP_046417477.1 | Chromosome-partitioning ATPase Soj | VF |
| B9J09_RS11925 () | 2154..3173 | + | 1020 | WP_171817035.1 | ParB/RepB/Spo0J family partition protein | - |
| B9J09_RS11930 () | 3271..3624 | + | 354 | WP_004091455.1 | hypothetical protein | - |
| B9J09_RS11935 () | 3651..4247 | + | 597 | WP_046417484.1 | hypothetical protein | - |
| B9J09_RS11940 () | 4309..4761 | - | 453 | WP_004091442.1 | conjugal transfer protein TraM | - |
| B9J09_RS11945 () | 4761..5486 | - | 726 | WP_046417487.1 | conjugal transfer protein TraL | - |
| B9J09_RS11950 () | 5486..5875 | - | 390 | WP_046417489.1 | TraK family protein | - |
| B9J09_RS11955 () | 6089..6442 | + | 354 | WP_046417491.1 | conjugal transfer transcriptional regulator TraJ | - |
| B9J09_RS11960 () | 6477..8969 | + | 2493 | WP_046417493.1 | Protein TraI | Relaxase |
| B9J09_RS11965 () | 8966..10900 | + | 1935 | WP_046417494.1 | type IV secretory system conjugative DNA transfer family protein | - |
| B9J09_RS11970 () | 10897..11433 | + | 537 | WP_046417495.1 | conjugative transfer signal peptidase TraF | - |
| B9J09_RS11975 () | 11462..13519 | + | 2058 | WP_046417497.1 | DNA topoisomerase 3 | - |
| B9J09_RS11980 () | 13522..13884 | + | 363 | WP_046417499.1 | hypothetical protein | - |
| B9J09_RS11985 () | 13890..18005 | + | 4116 | WP_046417500.1 | DUF1738 domain-containing protein | - |
| B9J09_RS11990 () | 18192..18749 | - | 558 | WP_046417502.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| B9J09_RS11995 () | 18837..19124 | - | 288 | WP_004085905.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| B9J09_RS12000 () | 19117..19359 | - | 243 | WP_004085758.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| B9J09_RS12005 () | 19777..20097 | + | 321 | WP_046417511.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| B9J09_RS12010 () | 20227..20553 | + | 327 | WP_004091396.1 | DNA-binding protein | - |
| B9J09_RS12510 () | 20928..21101 | - | 174 | WP_155641416.1 | hypothetical protein | - |
| B9J09_RS12015 () | 21103..21375 | - | 273 | WP_046417513.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| B9J09_RS12020 () | 21347..21844 | + | 498 | Protein_23 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| B9J09_RS12025 () | 21875..22456 | - | 582 | Protein_24 | hypothetical protein | VF |
| B9J09_RS12030 () | 22462..23859 | - | 1398 | WP_046417516.1 | P-type conjugative transfer protein TrbL | - |
| B9J09_RS12515 () | 23865..24179 | - | 315 | WP_155561293.1 | EexN family lipoprotein | - |
| B9J09_RS12040 () | 24192..24977 | - | 786 | WP_046417519.1 | P-type conjugative transfer protein TrbJ | - |
| B9J09_RS12045 () | 24996..26396 | - | 1401 | WP_046417521.1 | TrbI/VirB10 family protein | - |
| B9J09_RS12050 () | 26402..26878 | - | 477 | WP_046417523.1 | conjugal transfer protein TrbH | - |
| B9J09_RS12055 () | 26881..27771 | - | 891 | WP_046417527.1 | P-type conjugative transfer protein TrbG | - |
| B9J09_RS12060 () | 27788..28504 | - | 717 | WP_046417528.1 | conjugal transfer protein TrbF | - |
| B9J09_RS12065 () | 28501..31065 | - | 2565 | WP_046417530.1 | conjugal transfer protein TrbE | - |
| B9J09_RS12070 () | 31053..31373 | - | 321 | WP_046417532.1 | conjugal transfer protein TrbD | - |
| B9J09_RS12075 () | 31376..31768 | - | 393 | WP_046417535.1 | TrbC/VirB2 family protein | - |
| B9J09_RS12080 () | 31781..32740 | - | 960 | WP_046417547.1 | Putative conjugal transfer protein | VF |
| B9J09_RS12085 () | 32938..33294 | - | 357 | WP_012382841.1 | transcriptional regulator | - |
| B9J09_RS12090 () | 33412..33771 | + | 360 | WP_004091494.1 | single-stranded DNA-binding protein | - |
| B9J09_RS12095 () | 33815..34162 | + | 348 | WP_050812600.1 | hypothetical protein | - |
| B9J09_RS12100 () | 34206..35117 | + | 912 | WP_004091489.1 | replication protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|