MGE detailed information
MGE type: Prophage MGE length: 40880 bp
Accession: NZ_CP020835 Location: 2498503..2539382 Organism: Escherichia coli strain CFSAN051542 Replicon: chromosome
Accession: NZ_CP020835 Location: 2498503..2539382 Organism: Escherichia coli strain CFSAN051542 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCD20_RS12935 () | 2493656..2494186 | - | 531 | WP_044864590.1 | type 1 fimbrial protein | - |
| BCD20_RS12940 () | 2494200..2496851 | - | 2652 | WP_085381400.1 | fimbrial biogenesis outer membrane usher protein | - |
| BCD20_RS12945 () | 2496893..2497603 | - | 711 | WP_001195166.1 | fimbria/pilus periplasmic chaperone | - |
| BCD20_RS12955 () | 2499769..2500503 | - | 735 | Protein_2379 | molybdopterin-dependent oxidoreductase | - |
| BCD20_RS12960 () | 2500702..2501007 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| BCD20_RS12965 () | 2501115..2501825 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| BCD20_RS12970 () | 2501828..2502388 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| BCD20_RS12975 () | 2502423..2502764 | - | 342 | WP_044864500.1 | DUF1283 family protein | - |
| BCD20_RS12980 () | 2502899..2503225 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| BCD20_RS12990 () | 2503431..2504645 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| BCD20_RS12995 () | 2504657..2505676 | + | 1020 | WP_000836064.1 | Zn-dependent oxidoreductase | - |
| BCD20_RS13000 () | 2505734..2505844 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| BCD20_RS13005 () | 2505864..2507144 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| BCD20_RS13010 () | 2507179..2507430 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| BCD20_RS13015 () | 2507503..2509974 | - | 2472 | WP_000048342.1 | exonuclease | - |
| BCD20_RS13020 () | 2510067..2510258 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| BCD20_RS13025 () | 2510255..2510443 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| BCD20_RS13030 () | 2510527..2510880 | + | 354 | Protein_2393 | hypothetical protein | - |
| BCD20_RS13035 () | 2510921..2511343 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| BCD20_RS13040 () | 2511340..2511696 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| BCD20_RS13045 () | 2512219..2512916 | - | 698 | Protein_2396 | IS1 family transposase IS1R | Transposase |
| BCD20_RS26205 () | 2513084..2513371 | + | 288 | Protein_2397 | hypothetical protein | - |
| BCD20_RS13065 () | 2514140..2515453 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| BCD20_RS13070 () | 2515890..2516222 | - | 333 | WP_001301033.1 | protein FlxA | - |
| BCD20_RS13075 () | 2516425..2516730 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| BCD20_RS13080 () | 2516755..2516994 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| BCD20_RS13085 () | 2516994..2517281 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| BCD20_RS13090 () | 2517353..2517508 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| BCD20_RS13095 () | 2517725..2517976 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| BCD20_RS13100 () | 2518043..2518321 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| BCD20_RS13105 () | 2518323..2519372 | + | 1050 | WP_028985484.1 | DUF968 domain-containing protein | - |
| BCD20_RS13110 () | 2519386..2520138 | + | 753 | WP_001047135.1 | antitermination protein | - |
| BCD20_RS25920 () | 2520416..2520505 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| BCD20_RS13115 () | 2520560..2520774 | - | 215 | Protein_2409 | cold shock-like protein CspF | - |
| BCD20_RS13120 () | 2521075..2521290 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| BCD20_RS26365 () | 2521654..2521824 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| BCD20_RS13125 () | 2522044..2522259 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| BCD20_RS13130 () | 2522264..2522575 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| BCD20_RS13135 () | 2522572..2523105 | + | 534 | WP_001092971.1 | lysozyme | - |
| BCD20_RS13140 () | 2523102..2523599 | + | 498 | WP_028985485.1 | DUF2514 domain-containing protein | - |
| BCD20_RS13145 () | 2523962..2524174 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| BCD20_RS13150 () | 2524185..2524373 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| BCD20_RS25925 () | 2524376..2524441 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| BCD20_RS13155 () | 2524521..2524676 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| BCD20_RS13160 () | 2524848..2525021 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| BCD20_RS13165 () | 2525173..2525583 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| BCD20_RS13170 () | 2525641..2525874 | - | 234 | WP_085381402.1 | YlcI/YnfO family protein | - |
| BCD20_RS13175 () | 2526263..2526499 | + | 237 | Protein_2423 | DNA-packaging protein | - |
| BCD20_RS13180 () | 2526499..2527455 | + | 957 | Protein_2424 | phage terminase large subunit family protein | - |
| BCD20_RS13185 () | 2527460..2527828 | + | 369 | Protein_2425 | hypothetical protein | - |
| BCD20_RS13190 () | 2527828..2528403 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| BCD20_RS13195 () | 2528501..2529091 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| BCD20_RS13200 () | 2529408..2529641 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| BCD20_RS25930 () | 2529710..2529823 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| BCD20_RS13205 () | 2530425..2531708 | + | 1284 | Protein_2430 | MHS family MFS transporter YdfJ | - |
| BCD20_RS13210 () | 2531797..2533257 | + | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| BCD20_RS13215 () | 2533293..2533496 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| BCD20_RS13220 () | 2533672..2534358 | - | 687 | WP_024240468.1 | DNA-binding transcriptional regulator YdfH | - |
| BCD20_RS13225 () | 2534447..2535193 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| BCD20_RS13235 () | 2535330..2537375 | + | 2046 | WP_044066441.1 | peptidyl-dipeptidase Dcp | - |
| BCD20_RS13245 () | 2537420..2537938 | - | 519 | WP_044066442.1 | 2-oxo-tetronate isomerase | - |
| BCD20_RS13255 () | 2538001..2538698 | + | 698 | Protein_2437 | IS1 family transposase IS1R | Transposase |
| BCD20_RS13260 () | 2538990..2539382 | + | 393 | WP_085381403.1 | YdeI family stress tolerance OB fold protein | - |
| BCD20_RS13265 () | 2539637..2540527 | + | 891 | WP_000592826.1 | diguanylate cyclase DgcZ | - |
| BCD20_RS26370 () | 2540642..2540746 | - | 105 | WP_211180496.1 | protein MgtT | - |
| BCD20_RS13270 () | 2540746..2540841 | - | 96 | WP_000901367.1 | protein MgtS | - |
| BCD20_RS13275 () | 2540968..2542155 | - | 1188 | WP_001054189.1 | efflux MFS transporter YdeE | - |
| BCD20_RS13280 () | 2542350..2543249 | + | 900 | WP_000087214.1 | O-acetylserine/cysteine exporter | - |
| BCD20_RS13285 () | 2543280..2543498 | - | 219 | WP_000803659.1 | multiple antibiotic resistance protein MarB | - |
| BCD20_RS13290 () | 2543530..2543913 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| BCD20_RS13295 () | 2543934..2544368 | - | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|