MGE detailed information
MGE type: Prophage MGE length: 49860 bp
Accession: NZ_CP020753 Location: 293180..343039 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Accession: NZ_CP020753 Location: 293180..343039 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7485_RS01360 (288272) | 288272..289042 | - | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| B7485_RS01365 (289223) | 289223..289669 | + | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| B7485_RS01370 (289712) | 289712..292156 | - | 2445 | WP_025746263.1 | acyl-CoA dehydrogenase FadE | - |
| B7485_RS01375 (292396) | 292396..292974 | + | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| B7485_RS01380 (293180) | 293180..293947 | + | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| B7485_RS01385 (293918) | 293918..294658 | - | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| B7485_RS01390 (295042) | 295042..295563 | + | 522 | Protein_278 | C40 family peptidase | - |
| B7485_RS01395 (295739) | 295739..296236 | + | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| B7485_RS01400 (296453) | 296453..298165 | - | 1713 | Protein_280 | flagellar biosynthesis protein FlhA | - |
| B7485_RS01405 (298137) | 298137..298922 | + | 786 | WP_000207561.1 | putative lateral flagellar export/assembly protein LafU | - |
| B7485_RS01410 (298993) | 298993..300048 | + | 1056 | WP_128882050.1 | DNA polymerase IV | - |
| B7485_RS01415 (300100) | 300100..300393 | + | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| B7485_RS01420 (300396) | 300396..300794 | + | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| B7485_RS01425 (300804) | 300804..301256 | + | 453 | WP_001059861.1 | GNAT family N-acetyltransferase | - |
| B7485_RS01430 (301502) | 301502..302545 | + | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| B7485_RS01435 (302607) | 302607..303221 | + | 615 | Protein_287 | peptide chain release factor H | - |
| B7485_RS01440 (303278) | 303278..304735 | - | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| B7485_RS01445 (304997) | 304997..305455 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (306051) | 306051..306131 | + | 81 | NuclAT_9 | - | - |
| - (306051) | 306051..306131 | + | 81 | NuclAT_9 | - | - |
| - (306051) | 306051..306131 | + | 81 | NuclAT_9 | - | - |
| - (306051) | 306051..306131 | + | 81 | NuclAT_9 | - | - |
| B7485_RS01450 (305547) | 305547..306791 | + | 1245 | WP_000189558.1 | esterase FrsA | - |
| B7485_RS01455 (306849) | 306849..307250 | + | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| B7485_RS01460 (307289) | 307289..308344 | - | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| B7485_RS01465 (308520) | 308520..309217 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| B7485_RS01470 (309408) | 309408..310511 | + | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| B7485_RS01475 (310523) | 310523..311776 | + | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| B7485_RS01485 (311981) | 311981..312949 | - | 969 | Protein_296 | site-specific integrase | - |
| B7485_RS01495 (314214) | 314214..314726 | + | 513 | Protein_298 | hypothetical protein | - |
| B7485_RS01500 (314698) | 314698..315138 | + | 441 | WP_171763968.1 | tail fiber assembly protein | - |
| B7485_RS25400 (315372) | 315372..316892 | - | 1521 | WP_241558018.1 | glycosyltransferase family 39 protein | - |
| B7485_RS01520 (316895) | 316895..317815 | - | 921 | WP_000703663.1 | glycosyltransferase family 2 protein | - |
| B7485_RS01525 (317812) | 317812..318174 | - | 363 | WP_000915849.1 | GtrA family protein | - |
| B7485_RS01530 (318436) | 318436..318792 | - | 357 | Protein_303 | integrase | - |
| B7485_RS01540 (320157) | 320157..321366 | + | 1210 | Protein_305 | IS3 family transposase | - |
| B7485_RS01545 (321350) | 321350..321709 | + | 360 | WP_000563002.1 | hypothetical protein | - |
| B7485_RS01550 (321709) | 321709..322014 | + | 306 | WP_000206732.1 | protein YfdT | - |
| B7485_RS25405 (321930) | 321930..322364 | + | 435 | WP_077941726.1 | helix-turn-helix domain-containing protein | - |
| B7485_RS01560 (322286) | 322286..322957 | + | 672 | Protein_309 | site-specific integrase | - |
| B7485_RS01565 (323023) | 323023..324167 | + | 1145 | WP_134797288.1 | IS3 family transposase | - |
| B7485_RS01570 (324200) | 324200..324658 | + | 459 | Protein_311 | site-specific integrase | - |
| B7485_RS01575 (325007) | 325007..326179 | + | 1173 | WP_171763969.1 | acyltransferase | - |
| B7485_RS01580 (326233) | 326233..326856 | - | 624 | WP_005060548.1 | hypothetical protein | - |
| B7485_RS01590 (328165) | 328165..329374 | - | 1210 | Protein_315 | IS3 family transposase | - |
| B7485_RS01595 (329525) | 329525..330640 | + | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| B7485_RS01600 (330657) | 330657..331466 | - | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| B7485_RS01605 (331586) | 331586..332044 | + | 459 | WP_000158164.1 | YaiI/YqxD family protein | - |
| B7485_RS01610 (332227) | 332227..332751 | + | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| B7485_RS01615 (332801) | 332801..332989 | + | 189 | WP_001142438.1 | protein YaiA | - |
| B7485_RS01620 (333250) | 333250..333927 | + | 678 | WP_001276420.1 | AroM family protein | - |
| B7485_RS01625 (333999) | 333999..334283 | + | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| B7485_RS01630 (334438) | 334438..334773 | + | 336 | Protein_323 | DUF2773 domain-containing protein | - |
| B7485_RS01635 (334770) | 334770..335225 | + | 456 | WP_000194195.1 | hypothetical protein | - |
| B7485_RS01640 (335303) | 335303..336214 | - | 912 | WP_005053105.1 | recombination-associated protein RdgC | - |
| B7485_RS01645 (336339) | 336339..337247 | + | 909 | WP_001219335.1 | fructokinase | - |
| B7485_RS01650 (337390) | 337390..338571 | - | 1182 | WP_005053102.1 | MFS transporter AraJ | - |
| B7485_RS01655 (338697) | 338697..341840 | - | 3144 | WP_000698962.1 | exonuclease subunit SbcC | - |
| B7485_RS01660 (341837) | 341837..343039 | - | 1203 | WP_001221305.1 | exonuclease subunit SbcD | - |
| B7485_RS01665 (343229) | 343229..343918 | + | 690 | WP_000113937.1 | phosphate response regulator transcription factor PhoB | - |
| B7485_RS01670 (343976) | 343976..345271 | + | 1296 | WP_000893611.1 | phosphate regulon sensor histidine kinase PhoR | - |
| B7485_RS01675 (345678) | 345678..346997 | + | 1320 | WP_000149647.1 | branched-chain amino acid transporter carrier protein BrnQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|