MGE detailed information
MGE type: Prophage MGE length: 72869 bp
Accession: NZ_CP020753 Location: 1872831..1945699 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Accession: NZ_CP020753 Location: 1872831..1945699 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7485_RS09690 () | 1868024..1868671 | - | 648 | WP_000587200.1 | biotin/lipoyl-binding protein | - |
| B7485_RS09695 () | 1868768..1869583 | + | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
| B7485_RS25580 () | 1869757..1869973 | - | 217 | Protein_1884 | LysR family transcriptional regulator | - |
| B7485_RS09700 () | 1869973..1870116 | + | 144 | Protein_1885 | AbgT family transporter | - |
| B7485_RS09705 () | 1870127..1870642 | + | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| B7485_RS09710 () | 1870837..1871589 | + | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| B7485_RS09715 () | 1871741..1872691 | + | 951 | WP_001262123.1 | universal stress protein UspE | - |
| B7485_RS09720 () | 1872741..1872998 | - | 258 | Protein_1889 | DUF2534 family protein | - |
| B7485_RS09725 () | 1873198..1874010 | - | 813 | Protein_1890 | IS3-like element IS911 family transposase | - |
| B7485_RS09730 () | 1874095..1874460 | + | 366 | WP_000124119.1 | hypothetical protein | - |
| B7485_RS09735 () | 1874460..1875647 | + | 1188 | WP_000937573.1 | IS91 family transposase | - |
| B7485_RS09740 () | 1875831..1876195 | - | 365 | Protein_1893 | transposase | - |
| B7485_RS09745 () | 1876323..1877354 | + | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| B7485_RS09750 () | 1877405..1879018 | - | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| B7485_RS09755 () | 1879355..1879822 | - | 468 | Protein_1896 | DNA-binding transcriptional regulator PgrR | - |
| B7485_RS09760 () | 1879886..1880196 | + | 311 | Protein_1897 | transposase | - |
| B7485_RS09765 () | 1880239..1881448 | - | 1210 | Protein_1898 | IS3 family transposase | - |
| B7485_RS09770 () | 1881503..1882351 | + | 849 | Protein_1899 | IS3-like element IS600 family transposase | - |
| B7485_RS09775 () | 1882392..1883321 | + | 930 | Protein_1900 | exodeoxyribonuclease VIII | - |
| B7485_RS09780 () | 1883299..1883571 | + | 273 | WP_001277358.1 | host-nuclease inhibitor Gam family protein | - |
| B7485_RS09785 () | 1883601..1884698 | + | 1098 | WP_128882124.1 | AAA family ATPase | - |
| B7485_RS09790 () | 1884749..1884937 | + | 189 | WP_000276807.1 | DUF1187 family protein | - |
| - () | 1884755..1884933 | - | 179 | NuclAT_0 | - | - |
| - () | 1884755..1884933 | - | 179 | NuclAT_0 | - | - |
| - () | 1884755..1884933 | - | 179 | NuclAT_0 | - | - |
| - () | 1884755..1884933 | - | 179 | NuclAT_0 | - | - |
| B7485_RS09795 () | 1885038..1886193 | + | 1156 | WP_134797305.1 | IS3-like element IS600 family transposase | - |
| B7485_RS09800 () | 1886310..1886591 | + | 282 | WP_005127484.1 | excisionase | - |
| B7485_RS09805 () | 1886557..1887633 | + | 1077 | Protein_1906 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1887764..1887998 | + | 235 | - | - | Antitoxin Detail |
| - | 1887765..1887868 | - | 104 | - | - | Toxin Detail |
| B7485_RS09810 () | 1888026..1888367 | - | 342 | WP_000976476.1 | YebY family protein | - |
| B7485_RS09815 () | 1888380..1889252 | - | 873 | Protein_1908 | copper homeostasis membrane protein CopD | - |
| B7485_RS09820 () | 1889256..1889630 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| B7485_RS09825 () | 1889769..1889999 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B7485_RS09830 () | 1890101..1890757 | + | 657 | Protein_1911 | carbon-nitrogen hydrolase family protein YobB | - |
| B7485_RS09835 () | 1890781..1891443 | + | 663 | WP_000944270.1 | exodeoxyribonuclease X | - |
| B7485_RS09840 () | 1891440..1893500 | - | 2061 | WP_000936980.1 | oligopeptidase B | - |
| B7485_RS09845 () | 1893710..1894369 | - | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| B7485_RS09850 () | 1894696..1895052 | - | 357 | WP_005062375.1 | protein YebF | - |
| B7485_RS09855 () | 1895119..1895409 | - | 291 | Protein_1916 | DNA damage-inducible protein YebG | - |
| B7485_RS09860 () | 1895543..1896721 | + | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| B7485_RS09865 () | 1896777..1897418 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| B7485_RS09870 () | 1897455..1899266 | - | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| B7485_RS09875 () | 1899501..1900976 | - | 1476 | WP_000301736.1 | glucose-6-phosphate dehydrogenase | - |
| B7485_RS09880 () | 1901314..1902183 | + | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| B7485_RS09885 () | 1902311..1903753 | + | 1443 | WP_000044415.1 | pyruvate kinase | - |
| B7485_RS09890 () | 1903884..1904855 | - | 972 | WP_000448385.1 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | - |
| B7485_RS09895 () | 1904975..1906297 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| B7485_RS09900 () | 1906313..1907245 | - | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| B7485_RS09905 () | 1907324..1908079 | + | 756 | WP_000202992.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| B7485_RS09910 () | 1908076..1908861 | + | 786 | WP_000571468.1 | zinc ABC transporter permease subunit ZnuB | - |
| B7485_RS09915 () | 1909008..1910018 | - | 1011 | WP_000568525.1 | Holliday junction branch migration DNA helicase RuvB | - |
| B7485_RS09920 () | 1910027..1910638 | - | 612 | WP_000580324.1 | Holliday junction branch migration protein RuvA | - |
| B7485_RS09925 () | 1910777..1910842 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| B7485_RS09930 () | 1910912..1911514 | + | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| B7485_RS09935 () | 1911516..1912037 | - | 522 | WP_000974712.1 | crossover junction endodeoxyribonuclease RuvC | - |
| B7485_RS09940 () | 1912072..1912812 | - | 741 | WP_000907248.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| B7485_RS09945 () | 1912841..1913293 | - | 453 | WP_032319954.1 | dihydroneopterin triphosphate diphosphatase | - |
| B7485_RS09950 () | 1913411..1915183 | - | 1773 | WP_001258670.1 | aspartate--tRNA ligase | - |
| B7485_RS09955 () | 1915493..1915711 | + | 219 | Protein_1936 | isochorismatase family protein | - |
| B7485_RS09960 () | 1915939..1917135 | + | 1197 | WP_005049126.1 | IS110-like element ISSfl4 family transposase | - |
| B7485_RS09965 () | 1917162..1917509 | + | 348 | Protein_1938 | hydrolase | - |
| B7485_RS25585 () | 1917506..1917601 | + | 96 | Protein_1939 | hypothetical protein | - |
| B7485_RS25590 () | 1917591..1917767 | - | 177 | WP_000530007.1 | hypothetical protein | - |
| B7485_RS09970 () | 1917864..1918112 | + | 249 | WP_001210039.1 | DinI-like family protein | - |
| B7485_RS09980 () | 1918711..1920462 | + | 1752 | WP_134800208.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| B7485_RS09990 () | 1920643..1921266 | - | 624 | WP_134798388.1 | DUF4376 domain-containing protein | - |
| B7485_RS09995 () | 1921217..1922628 | - | 1412 | Protein_1944 | prophage tail fiber N-terminal domain-containing protein | - |
| B7485_RS10000 () | 1922692..1923291 | - | 600 | WP_001230368.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| B7485_RS10005 () | 1923359..1926838 | - | 3480 | WP_000515521.1 | host specificity protein J | - |
| B7485_RS10010 () | 1926899..1927474 | - | 576 | WP_005105520.1 | tail assembly protein | - |
| B7485_RS10015 () | 1927438..1928181 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| B7485_RS10020 () | 1928186..1928884 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| B7485_RS10025 () | 1928884..1929213 | - | 330 | WP_000447264.1 | phage tail protein | - |
| B7485_RS10030 () | 1929213..1932254 | - | 3042 | WP_128881990.1 | phage tail tape measure protein | - |
| B7485_RS10035 () | 1932226..1932555 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| B7485_RS10040 () | 1932564..1932950 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| B7485_RS10045 () | 1933009..1933749 | - | 741 | WP_000211126.1 | phage tail tube protein | - |
| B7485_RS10050 () | 1933760..1934161 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| B7485_RS10055 () | 1934158..1934748 | - | 591 | WP_000677116.1 | phage tail protein | - |
| B7485_RS10060 () | 1934735..1935106 | - | 372 | WP_000753026.1 | head-tail joining protein | - |
| B7485_RS10065 () | 1935118..1935519 | - | 402 | WP_001074423.1 | DNA-packaging protein FI | - |
| B7485_RS10070 () | 1935783..1936979 | + | 1197 | WP_134797307.1 | IS110-like element ISEc20 family transposase | - |
| B7485_RS10100 () | 1938165..1938854 | - | 690 | WP_001064885.1 | bacteriophage antitermination protein Q | - |
| B7485_RS10105 () | 1938851..1939210 | - | 360 | WP_001215517.1 | RusA family crossover junction endodeoxyribonuclease | - |
| B7485_RS25185 () | 1939210..1939347 | - | 138 | Protein_1962 | hypothetical protein | - |
| B7485_RS10110 () | 1939414..1940570 | + | 1157 | Protein_1963 | IS3-like element IS600 family transposase | - |
| B7485_RS25595 () | 1940883..1941071 | + | 189 | WP_001028876.1 | hypothetical protein | - |
| B7485_RS10125 () | 1941068..1941895 | + | 828 | WP_000755956.1 | SPFH domain-containing protein | - |
| B7485_RS10130 () | 1941939..1942688 | + | 750 | WP_001099210.1 | ORF6N domain-containing protein | - |
| B7485_RS10135 () | 1942685..1943254 | + | 570 | WP_000586688.1 | hypothetical protein | - |
| B7485_RS10145 () | 1943378..1943620 | + | 243 | WP_000457720.1 | DUF4222 domain-containing protein | - |
| B7485_RS10150 () | 1943624..1943770 | + | 147 | WP_001030131.1 | hypothetical protein | - |
| B7485_RS10155 () | 1943779..1943943 | + | 165 | Protein_1970 | excisionase family protein | - |
| B7485_RS10165 () | 1945352..1945699 | + | 348 | Protein_1972 | DUF72 domain-containing protein | - |
| B7485_RS10170 () | 1945752..1946147 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| B7485_RS10175 () | 1946188..1946931 | + | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| B7485_RS10180 () | 1946928..1947899 | + | 972 | WP_000564755.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| B7485_RS10185 () | 1948064..1950493 | - | 2430 | WP_001229399.1 | trimethylamine N-oxide reductase TorZ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|