MGE detailed information
MGE type: Prophage MGE length: 13684 bp
Accession: NZ_CP020753 Location: 1565473..1579156 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Accession: NZ_CP020753 Location: 1565473..1579156 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7485_RS08120 (1561319) | 1561319..1562083 | - | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| B7485_RS08125 (1562399) | 1562399..1562878 | + | 480 | Protein_1569 | cupin domain-containing protein | - |
| B7485_RS08130 (1562933) | 1562933..1563630 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| B7485_RS08135 (1563624) | 1563624..1563791 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| B7485_RS08140 (1564193) | 1564193..1564954 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| B7485_RS08145 (1565022) | 1565022..1565225 | - | 204 | WP_000543383.1 | two-component system connector SafA | - |
| B7485_RS08150 (1565473) | 1565473..1567752 | - | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| B7485_RS08155 (1568086) | 1568086..1568514 | - | 429 | Protein_1575 | fimbrial protein | - |
| B7485_RS08160 (1568571) | 1568571..1569268 | + | 698 | WP_227804319.1 | IS1 family transposase | - |
| B7485_RS08165 (1569286) | 1569286..1570164 | + | 879 | Protein_1577 | IS3-like element IS600 family transposase | - |
| B7485_RS08170 (1570161) | 1570161..1570466 | - | 306 | WP_071818640.1 | hypothetical protein | - |
| B7485_RS08175 (1570491) | 1570491..1570730 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| B7485_RS08180 (1570730) | 1570730..1571017 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| B7485_RS08185 (1571089) | 1571089..1571244 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| B7485_RS08190 (1571462) | 1571462..1571713 | + | 252 | WP_000980987.1 | protein Rem | - |
| B7485_RS08195 (1571780) | 1571780..1572058 | + | 279 | Protein_1583 | hypothetical protein | - |
| B7485_RS08200 (1572060) | 1572060..1573109 | + | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| B7485_RS08205 (1573122) | 1573122..1573478 | + | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| B7485_RS08210 (1573493) | 1573493..1574314 | + | 822 | WP_000762884.1 | antitermination protein | - |
| B7485_RS08225 (1574898) | 1574898..1575176 | + | 279 | WP_001017786.1 | hypothetical protein | - |
| B7485_RS08230 (1575235) | 1575235..1575343 | + | 109 | Protein_1588 | DUF3927 family protein | - |
| B7485_RS08235 (1575624) | 1575624..1575959 | - | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| B7485_RS08240 (1576219) | 1576219..1576404 | + | 186 | Protein_1590 | DUF1737 domain-containing protein | - |
| B7485_RS25140 (1576404) | 1576404..1576565 | + | 162 | WP_001323614.1 | hypothetical protein | - |
| B7485_RS08245 (1576715) | 1576715..1576894 | + | 180 | WP_000372594.1 | class II holin family protein | - |
| B7485_RS08255 (1578137) | 1578137..1579156 | + | 1020 | Protein_1594 | MHS family MFS transporter YdfJ | - |
| B7485_RS08260 (1579245) | 1579245..1580705 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| B7485_RS08265 (1580741) | 1580741..1580944 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| B7485_RS08270 (1581122) | 1581122..1581808 | - | 687 | WP_005127032.1 | DNA-binding transcriptional regulator rspR | - |
| B7485_RS08275 (1581897) | 1581897..1582643 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |