MGE detailed information
MGE type: Prophage MGE length: 45694 bp
Accession: NZ_CP020753 Location: 1387780..1433473 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Accession: NZ_CP020753 Location: 1387780..1433473 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7485_RS07115 () | 1383611..1385152 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| B7485_RS07120 () | 1385196..1385702 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| B7485_RS07125 () | 1385821..1386786 | + | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| B7485_RS07130 () | 1386761..1387489 | - | 729 | WP_128881938.1 | murein tripeptide amidase MpaA | - |
| B7485_RS07135 () | 1387780..1388418 | - | 639 | WP_128881937.1 | SDR family oxidoreductase | - |
| B7485_RS07140 () | 1388436..1389017 | - | 582 | Protein_1382 | alpha/beta hydrolase | - |
| B7485_RS07145 () | 1389246..1390442 | + | 1197 | WP_005107451.1 | IS110-like element ISSfl4 family transposase | - |
| B7485_RS07150 () | 1390469..1391481 | - | 1013 | Protein_1384 | IS3-like element IS2 family transposase | - |
| B7485_RS25515 () | 1392005..1392174 | + | 170 | Protein_1385 | hypothetical protein | - |
| B7485_RS07160 () | 1392320..1393066 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| B7485_RS07165 () | 1393081..1393503 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| B7485_RS07170 () | 1393561..1393917 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| B7485_RS07175 () | 1394010..1394228 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| B7485_RS07180 () | 1394230..1394595 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| B7485_RS07185 () | 1394592..1395257 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| B7485_RS07190 () | 1395257..1395622 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1396007..1396065 | - | 59 | - | - | Antitoxin Detail |
| B7485_RS07195 () | 1396077..1396232 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| B7485_RS07210 () | 1397569..1398168 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| B7485_RS07215 () | 1398168..1398458 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| B7485_RS07220 () | 1398455..1399009 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| B7485_RS07225 () | 1399150..1399335 | + | 186 | WP_005049799.1 | hypothetical protein | - |
| B7485_RS07230 () | 1399397..1400553 | + | 1157 | WP_134797302.1 | IS3-like element IS600 family transposase | - |
| B7485_RS07235 () | 1400546..1401106 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| B7485_RS07265 () | 1401740..1403344 | + | 1605 | WP_128882120.1 | site-specific integrase | - |
| B7485_RS07270 () | 1404228..1404407 | + | 180 | Protein_1402 | Rha family transcriptional regulator | - |
| B7485_RS07275 () | 1404466..1405163 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| B7485_RS07280 () | 1405179..1406084 | + | 906 | Protein_1404 | IS3-like element IS600 family transposase | - |
| B7485_RS25115 () | 1406112..1406480 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| B7485_RS07295 () | 1406504..1407048 | + | 545 | Protein_1406 | tail fiber assembly protein | - |
| B7485_RS07300 () | 1407072..1408257 | + | 1186 | Protein_1407 | prophage tail fiber N-terminal domain-containing protein | - |
| B7485_RS07305 () | 1408208..1408831 | + | 624 | WP_064194761.1 | DUF4376 domain-containing protein | - |
| B7485_RS07310 () | 1409032..1409889 | - | 858 | WP_000968134.1 | iron/manganese ABC transporter permease subunit SitD | - |
| B7485_RS07315 () | 1409886..1410743 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| B7485_RS07320 () | 1410740..1411567 | - | 828 | WP_000983722.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| B7485_RS07325 () | 1411567..1412481 | - | 915 | WP_000555620.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| B7485_RS07330 () | 1412943..1413584 | - | 642 | Protein_1413 | site-specific integrase | - |
| B7485_RS07335 () | 1413638..1414335 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| B7485_RS07340 () | 1414352..1414522 | - | 171 | Protein_1415 | DUF3596 domain-containing protein | - |
| B7485_RS07345 () | 1414524..1414691 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| B7485_RS07350 () | 1414739..1415793 | - | 1055 | Protein_1417 | IS3 family transposase | - |
| B7485_RS07355 () | 1415819..1416979 | - | 1161 | WP_005107813.1 | AAA family ATPase | - |
| B7485_RS07365 () | 1418189..1418497 | - | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| B7485_RS07370 () | 1418596..1419752 | + | 1157 | WP_094190485.1 | IS3-like element IS600 family transposase | - |
| B7485_RS07375 () | 1419809..1421224 | - | 1416 | Protein_1422 | exodeoxyribonuclease VIII | - |
| B7485_RS07385 () | 1422103..1422375 | - | 273 | WP_024260426.1 | hypothetical protein | - |
| B7485_RS07390 () | 1422450..1422620 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| B7485_RS07395 () | 1422620..1422841 | - | 222 | WP_000560226.1 | killing protein KilR | - |
| B7485_RS07405 () | 1424188..1425076 | - | 889 | Protein_1428 | Rha family transcriptional regulator | - |
| B7485_RS25120 () | 1425694..1426074 | + | 381 | Protein_1429 | IS66-like element accessory protein TnpA | - |
| B7485_RS25125 () | 1426076..1426243 | + | 168 | Protein_1430 | phage tail protein | - |
| B7485_RS07415 () | 1426194..1426817 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| B7485_RS07425 () | 1426997..1428712 | - | 1716 | WP_128636480.1 | T3SS effector E3 ubiquitin-protein ligase IpaH3 | - |
| B7485_RS07435 () | 1429454..1429900 | + | 447 | Protein_1433 | metallophosphoesterase | - |
| B7485_RS07440 () | 1429965..1431121 | + | 1157 | WP_094081550.1 | IS3-like element IS600 family transposase | - |
| B7485_RS07445 () | 1431165..1431353 | + | 189 | Protein_1435 | serine/threonine-protein phosphatase | - |
| B7485_RS07450 () | 1431378..1431569 | - | 192 | WP_001296140.1 | YebW family protein | - |
| B7485_RS07455 () | 1431674..1431910 | - | 237 | WP_001295499.1 | YebV family protein | - |
| B7485_RS07460 () | 1432028..1433467 | - | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B7485_RS07465 () | 1433547..1436167 | - | 2621 | Protein_1439 | lipid-binding membrane homeostasis protein YebT | - |
| B7485_RS07470 () | 1436136..1437419 | - | 1284 | Protein_1440 | membrane integrity lipid transport subunit YebS | - |
| B7485_RS07475 () | 1437549..1438046 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|